Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ATP1A1	476	hgsc.bcm.edu	hg19	1	116941400	116941400	+	Missense_Mutation	SNP	G	G	C	rs11540954		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ATP1A1	NM_000701	exon16	c.G2282C	p.G761A	TGACTGGAGTAGA	.	178.0	56.0	180.0	0.0	.	87	.	.	.	weak	.	.	PASS	Atlas-SNP
ATP1B1	481	hgsc.bcm.edu	hg19	1	169096584	169096584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ATP1B1	NM_001677	exon4	c.T505C	p.Y169H	TATGGCTACAAAG	.	188.0	58.0	167.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
GOLT1A	127845	hgsc.bcm.edu	hg19	1	204183026	204183026	+	Silent	SNP	G	G	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	GOLT1A	NM_198447	exon1	c.C9A	p.S3S	GGTGATGGAGATC	.	50.0	11.0	42.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
GRHL1	29841	hgsc.bcm.edu	hg19	2	10101557	10101557	+	Missense_Mutation	SNP	G	G	A	rs140278187	bycluster	TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	GRHL1	NM_198182	exon4	c.G661A	p.V221I	GAAGGCGTTCAGG	.	170.0	54.0	154.0	0.0	.	95	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
TMEM37	140738	hgsc.bcm.edu	hg19	2	120194829	120194829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TMEM37	NM_183240	exon2	c.T386C	p.I129T	GTTCCATCCTCCT	.	471.0	126.0	464.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
KCNH7	90134	hgsc.bcm.edu	hg19	2	163241347	163241347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	KCNH7	NM_033272	exon13	c.T2813C	p.I938T	GAGGAGATGAAAG	.	437.0	141.0	459.0	1.0	.	378	.	.	.	none	.	.	PASS	Atlas-SNP
ITGB5	3693	hgsc.bcm.edu	hg19	3	124515613	124515613	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ITGB5	NM_002213	exon10	c.G1315T	p.E439X	CATGCTCCGTGTG	.	89.0	22.0	73.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
ITGB5	3693	hgsc.bcm.edu	hg19	3	124515614	124515614	+	Silent	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ITGB5	NM_002213	exon10	c.G1314A	p.T438T	ATGCTCCGTGTGT	.	91.0	24.0	73.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
PCYT1A	5130	hgsc.bcm.edu	hg19	3	195974373	195974373	+	Silent	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	PCYT1A	NM_005017	exon6	c.C351T	p.L117L	GTGTGTGAGCTCA	.	245.0	63.0	170.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC33	375387	hgsc.bcm.edu	hg19	3	196387840	196387840	+	Silent	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	LRRC33	NM_198565	exon3	c.C1326T	p.P442P	TTGTCCCCTGCCA	.	489.0	202.0	439.0	1.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
CLOCK	9575	hgsc.bcm.edu	hg19	4	56301654	56301654	+	Silent	SNP	A	A	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CLOCK	NM_004898	exon23	c.T2469A	p.S823S	TTGCTGAGACTGA	.	195.0	62.0	205.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
UGT2B7	7364	hgsc.bcm.edu	hg19	4	69978199	69978199	+	Silent	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	UGT2B7	NM_001074	exon6	c.A1335G	p.L445L	GAAATTATCAAGA	.	252.0	66.0	203.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP24	83478	hgsc.bcm.edu	hg19	4	86921691	86921691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ARHGAP24	NM_001025616	exon10	c.A2063G	p.D688G	AACTGGATCAGGA	.	129.0	53.0	151.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
SEMA5A	9037	hgsc.bcm.edu	hg19	5	9226981	9226981	+	Silent	SNP	C	C	T	rs141767878	bycluster	TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SEMA5A	NM_003966	exon7	c.G432A	p.S144S	CCATACCGAGCGG	.	117.0	6.0	161.0	0.0	.	236	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	hg19	5	128956361	128956361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	ADAMTS19,caecum,carcinoma,0,1	ADAMTS19	NM_133638	exon9	c.A1511G	p.H504R	GTCTTCATATCAT	.	282.0	12.0	229.0	0.0	.	216	.	.	.	none	.	.	PASS	Atlas-SNP
GABRG2	2566	hgsc.bcm.edu	hg19	5	161576298	161576298	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	GABRG2	NM_198903	exon9	c.A1227T	p.K409N	GGACAAAGATAAA	.	178.0	57.0	158.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
FAM135A	57579	hgsc.bcm.edu	hg19	6	71234676	71234676	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	FAM135A	NM_001162529	exon13	c.T1889A	p.M630K	CACAAATGGAACA	.	127.0	52.0	143.0	0.0	.	181	.	.	.	none	.	.	PASS	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117364734	117364734	+	Silent	SNP	T	T	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CTTNBP2	NM_033427	exon19	c.A4314T	p.I1438I	GGAAACTATGGAT	.	187.0	53.0	147.0	0.0	.	200	.	.	.	none	.	.	PASS	Atlas-SNP
ARF5	381	hgsc.bcm.edu	hg19	7	127229193	127229193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ARF5	NM_001662	exon2	c.A124G	p.I42V	GGGGAGATTGTCA	.	117.0	46.0	99.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
ABRA	137735	hgsc.bcm.edu	hg19	8	107782408	107782408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ABRA	NM_139166	exon1	c.G11T	p.G4V	TTTTCGCCCGGAG	.	125.0	27.0	110.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
MRPL13	28998	hgsc.bcm.edu	hg19	8	121455496	121455496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MRPL13	NM_014078	exon2	c.C80T	p.P27L	CCAGGTGGCTGCA	.	194.0	62.0	178.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
CYHR1	50626	hgsc.bcm.edu	hg19	8	145690192	145690192	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CYHR1	NM_032687	exon2	c.G93C	p.E31D	ACTCACCTCGGCT	.	51.0	18.0	38.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
TNFSF8	944	hgsc.bcm.edu	hg19	9	117666220	117666220	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TNFSF8	NM_001244	exon4	c.T696G	p.N232K	GTCTGAATTACTG	.	273.0	82.0	266.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
TNKS2	80351	hgsc.bcm.edu	hg19	10	93593686	93593686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TNKS2	NM_025235	exon12	c.T1352C	p.L451P	GCCGCCTACTCCT	.	240.0	79.0	225.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
ITPRIP	85450	hgsc.bcm.edu	hg19	10	106075425	106075425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ITPRIP	NM_001272013	exon2	c.G385A	p.A129T	AGGGGGCGCCCCC	.	179.0	76.0	167.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
MRGPRX1	259249	hgsc.bcm.edu	hg19	11	18955994	18955994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MRGPRX1	NM_147199	exon1	c.T338A	p.L113Q	GCACTCAGAAAGC	.	153.0	7.0	157.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
ABCG4	64137	hgsc.bcm.edu	hg19	11	119027678	119027678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ABCG4	NM_022169	exon9	c.G1022T	p.S341I	AGAGCAGCCCTGA	.	220.0	75.0	253.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
WDR66	144406	hgsc.bcm.edu	hg19	12	122413567	122413567	+	Silent	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	WDR66	NM_144668	exon19	c.T2982C	p.I994I	AGCAATTGGCTTT	.	141.0	49.0	184.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
FRMD6	122786	hgsc.bcm.edu	hg19	14	52182105	52182105	+	Silent	SNP	G	G	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	FRMD6	NM_001267046	exon10	c.G912T	p.T304T	CTACACGGGGTGC	.	156.0	13.0	153.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
TMC3	342125	hgsc.bcm.edu	hg19	15	81648105	81648105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TMC3	NM_001080532	exon9	c.C896T	p.A299V	AATATAGCTTCCT	.	112.0	35.0	89.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS17	170691	hgsc.bcm.edu	hg19	15	100657190	100657190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ADAMTS17	NM_139057	exon13	c.G1750A	p.G584S	TGGCACCCGGGCA	.	50.0	20.0	65.0	0.0	.	127	.	.	.	none	.	.	PASS	Atlas-SNP
IFT140	9742	hgsc.bcm.edu	hg19	16	1608090	1608090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	IFT140	NM_014714	exon19	c.C2245A	p.H749N	GGATGTGGTGGCA	.	568.0	163.0	421.0	1.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
ASGR1	432	hgsc.bcm.edu	hg19	17	7081872	7081872	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ASGR1	NM_001671	exon2	c.A11C	p.E4A	TGATACTCCTTGG	.	124.0	60.0	92.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
PFAS	5198	hgsc.bcm.edu	hg19	17	8170542	8170542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	PFAS	NM_012393	exon24	c.C3164T	p.P1055L	CCGTGCCCCGTGA	.	44.0	13.0	21.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
ACE	1636	hgsc.bcm.edu	hg19	17	61562641	61562641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ACE	NM_000789	exon13	c.T1966C	p.Y656H	GAGGAATATGACC	.	111.0	52.0	91.0	0.0	.	187	.	.	.	none	.	.	PASS	Atlas-SNP
DAZAP1	26528	hgsc.bcm.edu	hg19	19	1428875	1428875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	DAZAP1	NM_018959	exon8	c.A581G	p.K194R	ACAGCAAGAGCCA	.	87.0	26.0	80.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
EEF2	1938	hgsc.bcm.edu	hg19	19	3979985	3979985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	EEF2	NM_001961	exon10	c.G1426A	p.D476N	ACTGGTCCACGCC	.	76.0	23.0	85.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
EIF3G	8666	hgsc.bcm.edu	hg19	19	10230530	10230530	+	Silent	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	EIF3G	NM_003755	exon1	c.T6C	p.P2P	TCCAGTAGGCATC	.	114.0	27.0	120.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF627	199692	hgsc.bcm.edu	hg19	19	11728624	11728624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ZNF627	NM_145295	exon4	c.G1306T	p.V436L	TTTCGAGTACATG	.	149.0	38.0	186.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
SLC5A3	6526	hgsc.bcm.edu	hg19	21	35467607	35467607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SLC5A3	NM_006933	exon2	c.G110A	p.S37N	CCGTGAGTGGATA	.	308.0	107.0	265.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
SUSD2	56241	hgsc.bcm.edu	hg19	22	24581140	24581140	+	Silent	SNP	C	C	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SUSD2	NM_019601	exon6	c.C861A	p.A287A	TGTGGCCTGGGCA	.	69.0	21.0	79.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
TTLL1	25809	hgsc.bcm.edu	hg19	22	43442517	43442517	+	Silent	SNP	C	C	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TTLL1	NM_012263	exon10	c.G1041C	p.L347L	ATTAATCAGGTTG	.	301.0	13.0	317.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
COX2	5743	hgsc.bcm.edu	hg19	MT	8060	8060	+	Missense_Mutation	SNP	G	G	A	rs79386853	bycluster;alternate_allele	TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	.	ENST00000361739	exon1	c.G475A	p.V159I	CAAGACGTCTTGC	.	75.0	7.0	60.0	0.0	.	.	.	.	.	alt	T|1.000;|0.000	.	PASS	Atlas-SNP
SELE	6401	hgsc.bcm.edu	hg19	1	169698749	169698749	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SELE	NM_000450	exon6	c.782delG	p.S261fs	.	.	250.0	97.0	235.0	0.0	.	84	.	0.388	0	none	.	.	PASS	Atlas-INDEL
ANGEL1	23357	hgsc.bcm.edu	hg19	14	77274402	77274411	+	Frame_Shift_Del	DEL	GAGTGAACTG	GAGTGAACTG	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	GAGTGAACTG	GAGTGAACTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ANGEL1	NM_015305	exon3	c.731_740del	p.244_247del	.	.	121.0	26.0	121.0	0.0	.	63	.	0.214876	0	none	.	.	PASS	Atlas-INDEL
PIPOX	51268	hgsc.bcm.edu	hg19	17	27370356	27370357	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	PIPOX	NM_016518	exon1	c.113_114insG	p.Q38fs	.	.	156.0	78.0	91.0	0.0	.	42	.	0.5	0	none	.	.	PASS	Atlas-INDEL
FBN3	84467	hgsc.bcm.edu	hg19	19	8182139	8182139	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	FBN3	NM_032447	exon27	c.3501delC	p.D1167fs	.	.	62.0	14.0	86.0	0.0	.	300	.	0.225806	0	none	.	.	PASS	Atlas-INDEL
EP300	2033	hgsc.bcm.edu	hg19	22	41574679	41574681	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	EP300	NM_001429	exon31	c.6963_6965del	p.2321_2322del	.	.	146.0	38.0	135.0	0.0	.	367	.	0.260274	0	none	.	.	PASS	Atlas-INDEL
CEP350	9857	hgsc.bcm.edu	hg19	1	179965912	179965912	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CEP350	NM_014810	exon6	c.619delC	p.Q207fs	.	.	55.0	12.0	44.0	0.0	.	418	.	0.218182	0	none	.	.	PASS	Atlas-INDEL
