Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ATP5F1	515	hgsc.bcm.edu	hg19	1	112002161	112002161	+	Missense_Mutation	SNP	A	A	G	rs201457142	bycluster	TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ATP5F1	NM_001688	exon6	c.A596G	p.Y199C	TGGACTATCATAT	.	50.0	7.0	73.0	0.0	.	20	.	.	.	weak	A|0.999;G|0.001	0.001	PASS	Atlas-SNP
SLC16A1	6566	hgsc.bcm.edu	hg19	1	113460277	113460277	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	SLC16A1	NM_001166496	exon4	c.C751T	p.Q251X	GGAACTGATTAAT	.	86.0	17.0	156.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
SNAPIN	23557	hgsc.bcm.edu	hg19	1	153631989	153631989	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	SNAPIN	NM_012437	exon3	c.C256G	p.L86V	AAGCTACTTAATG	.	95.0	14.0	148.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
NLRC4	58484	hgsc.bcm.edu	hg19	2	32475306	32475306	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	NLRC4	NM_001199138	exon4	c.C1627G	p.Q543E	TTTCTTGCTCAGT	.	105.0	21.0	164.0	0.0	.	165	.	.	.	none	.	.	PASS	Atlas-SNP
NLRC4	58484	hgsc.bcm.edu	hg19	2	32475307	32475307	+	Silent	SNP	C	C	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	NLRC4	NM_001199138	exon4	c.G1626A	p.E542E	TTCTTGCTCAGTG	.	106.0	21.0	163.0	0.0	.	165	.	.	.	none	.	.	PASS	Atlas-SNP
HAT1	8520	hgsc.bcm.edu	hg19	2	172848182	172848182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	HAT1,NS,carcinoma,0,1	HAT1	NM_003642	exon11	c.C1176A	p.S392R	AATAAGCATGCAA	.	55.0	3.0	77.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF142	7701	hgsc.bcm.edu	hg19	2	219510938	219510938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ZNF142	NM_001105537	exon7	c.G1407T	p.K469N	GTAGTGCTTCCAC	.	139.0	32.0	134.0	0.0	.	190	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS16	170690	hgsc.bcm.edu	hg19	5	5235247	5235247	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ADAMTS16	NM_139056	exon13	c.C1971G	p.S657R	CAACAGCAGACGA	.	124.0	16.0	97.0	0.0	.	543	.	.	.	none	.	.	PASS	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82850838	82850838	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	VCAN,NS,carcinoma,0,1	VCAN	NM_004385	exon12	c.G9716A	p.W3239X	TCCGTTGGACTGA	.	79.0	13.0	89.0	0.0	.	498	.	.	.	none	.	.	PASS	Atlas-SNP
HIST1H4B	8366	hgsc.bcm.edu	hg19	6	26027471	26027471	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	HIST1H4B,NS,carcinoma,0,1	HIST1H4B	NM_003544	exon1	c.C10G	p.R4G	TGCCGCGACCAGA	.	104.0	16.0	95.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51924820	51924820	+	Missense_Mutation	SNP	A	A	C	rs143341567	alternate_allele	TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	PKHD1	NM_170724	exon15	c.T1139G	p.F380C	GCCACAAAGAACC	.	67.0	18.0	121.0	0.0	.	927	.	.	.	alt	A|1.000;G|0.000	.	PASS	Atlas-SNP
KCNQ5	56479	hgsc.bcm.edu	hg19	6	73905126	73905126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	KCNQ5	NM_001160133	exon15	c.A2845G	p.K949E	CATGTCAAACTGA	.	112.0	17.0	122.0	0.0	.	153	.	.	.	none	.	.	PASS	Atlas-SNP
RARS2	57038	hgsc.bcm.edu	hg19	6	88231239	88231239	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	RARS2	NM_020320	exon12	c.T978A	p.D326E	TGCAAGATCTCTG	.	33.0	8.0	64.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
CAPRIN2	65981	hgsc.bcm.edu	hg19	12	30888129	30888129	+	Silent	SNP	C	C	T	rs145888176		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	CAPRIN2,NS,carcinoma,0,1	CAPRIN2	NM_023925	exon4	c.G582A	p.A194A	CTTTTGCGCTTTT	.	91.0	5.0	171.0	0.0	.	109	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
RAN	5901	hgsc.bcm.edu	hg19	12	131359114	131359114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	RAN	NM_006325	exon5	c.G271A	p.D91N	ATGTTTGATGTAA	.	50.0	9.0	95.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
TJP1	7082	hgsc.bcm.edu	hg19	15	30008820	30008820	+	Silent	SNP	A	A	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	TJP1	NM_003257	exon23	c.T4197C	p.S1399S	CTTTGAAGAATAA	.	54.0	7.0	81.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
TJP1	7082	hgsc.bcm.edu	hg19	15	30065529	30065529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	TJP1	NM_175610	exon3	c.C116A	p.S39Y	CCACCAGATATTG	.	108.0	19.0	148.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
EFCAB3	146779	hgsc.bcm.edu	hg19	17	60484528	60484528	+	Silent	SNP	T	T	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	EFCAB3	NM_001144933	exon10	c.T978C	p.H326H	TTTGCATTTCTTT	.	74.0	7.0	92.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL14	57565	hgsc.bcm.edu	hg19	18	30350134	30350134	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	KLHL14	NM_020805	exon2	c.T421G	p.Y141D	AGAGGTACTCGAG	.	268.0	50.0	216.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
ATP5A1	498	hgsc.bcm.edu	hg19	18	43671697	43671697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ATP5A1	NM_004046	exon3	c.T260C	p.L87P	TTCCTCAGCCCAT	.	103.0	25.0	134.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD27	84079	hgsc.bcm.edu	hg19	19	33132944	33132944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ANKRD27	NM_032139	exon10	c.C890T	p.S297F	CTTGGAGACTGTG	.	199.0	53.0	214.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
LILRA5	353514	hgsc.bcm.edu	hg19	19	54819027	54819027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	LILRA5	NM_021250	exon6	c.C719T	p.A240V	TTATCAGCTGCTC	.	66.0	13.0	69.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53589174	53589174	+	Silent	SNP	C	C	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	HUWE1	NM_031407	exon54	c.G7236A	p.E2412E	CTCCTCCTCATCC	.	57.0	16.0	59.0	0.0	.	724	.	.	.	none	.	.	PASS	Atlas-SNP
IGFBP1	3484	hgsc.bcm.edu	hg19	7	45932569	45932569	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	IGFBP1	NM_000596	exon4	c.658delT	p.S220fs	.	.	119.0	11.0	101.0	0.0	.	19	.	0.092437	0	none	.	.	PASS	Atlas-INDEL
GIT2	9815	hgsc.bcm.edu	hg19	12	110385121	110385127	+	Frame_Shift_Del	DEL	TGGGAGA	TGGGAGA	-	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	TGGGAGA	TGGGAGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	GIT2	NM_001135214	exon15	c.1576_1582del	p.526_528del	.	.	110.0	15.0	92.0	0.0	.	81	.	0.136364	0	none	.	.	PASS	Atlas-INDEL
ZNF341	84905	hgsc.bcm.edu	hg19	20	32345059	32345060	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ZNF341	NM_032819	exon6	c.847_848insC	p.T283fs	.	.	414.0	128.0	318.0	0.0	.	73	.	0.309179	0	none	.	.	PASS	Atlas-INDEL
TRIP6	7205	hgsc.bcm.edu	hg19	7	100465513	100465514	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	TRIP6	NM_003302	exon2	c.140_141insC	p.C47fs	.	.	335.0	81.0	265.0	0.0	.	45	.	0.241791	0	none	.	.	PASS	Atlas-INDEL
NUP50	10762	hgsc.bcm.edu	hg19	22	45574449	45574449	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	NUP50	NM_007172	exon5	c.670delC	p.L224fs	.	.	83.0	11.0	106.0	0.0	.	24	.	0.13253	0	none	.	.	PASS	Atlas-INDEL
S100PBP	64766	hgsc.bcm.edu	hg19	1	33292114	33292114	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	S100PBP,colon,carcinoma,0,1	S100PBP	NM_001256121	exon3	c.413delT	p.V138fs	.	.	70.0	16.0	100.0	0.0	.	31	.	0.228571	0	none	.	.	PASS	Atlas-INDEL
