Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PHC2	1912	hgsc.bcm.edu	hg19	1	33790580	33790580	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	PHC2,NS,carcinoma,0,1	PHC2	NM_198040	exon14	c.C2463G	p.I821M	CCCGTCGATTTCC	.	44.0	17.0	52.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF691	51058	hgsc.bcm.edu	hg19	1	43316674	43316674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	ZNF691	NM_001242739	exon4	c.G138T	p.E46D	GCCTGAGGAAGGG	.	89.0	4.0	124.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRF	5792	hgsc.bcm.edu	hg19	1	44035436	44035436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	PTPRF	NM_002840	exon6	c.G555T	p.K185N	CATCAAGCAGCTG	.	40.0	14.0	74.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	hg19	1	109801145	109801145	+	Silent	SNP	G	G	A	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	CELSR2	NM_001408	exon2	c.G3402A	p.E1134E	CCTGGAGGACATG	.	130.0	43.0	128.0	0.0	.	228	.	.	.	none	.	.	PASS	Atlas-SNP
PTPN22	26191	hgsc.bcm.edu	hg19	1	114397574	114397574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	PTPN22	NM_001193431	exon8	c.G638A	p.R213H	TAACAACGTACAT	.	84.0	43.0	80.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
SYCP1	6847	hgsc.bcm.edu	hg19	1	115453123	115453123	+	Splice_Site	SNP	G	G	A	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	SYCP1	NM_003176	exon17	c.1425+1G>A	.	AGAGAGGTTTGTT	.	262.0	87.0	337.0	1.0	.	149	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY10	55811	hgsc.bcm.edu	hg19	1	167829047	167829047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	ADCY10	NM_018417	exon16	c.C1894A	p.L632M	TTACCAGCTTCAA	.	66.0	4.0	69.0	0.0	.	175	.	.	.	none	.	.	PASS	Atlas-SNP
RAB3GAP2	25782	hgsc.bcm.edu	hg19	1	220345388	220345388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	RAB3GAP2	NM_012414	exon23	c.C2420T	p.A807V	TCGATGGCCACTA	.	172.0	46.0	169.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228468061	228468061	+	Silent	SNP	A	A	G	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	OBSCN	NM_001271223	exon34	c.A9132G	p.V3044V	GCTGGTACTGAAG	.	50.0	19.0	71.0	0.0	.	2142	.	.	.	none	.	.	PASS	Atlas-SNP
LMAN2L	81562	hgsc.bcm.edu	hg19	2	97400231	97400231	+	Silent	SNP	C	C	T	rs199689213		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	LMAN2L	NM_030805	exon3	c.G339A	p.V113V	GAAGTGCACCTGC	.	71.0	43.0	57.0	0.0	.	27	.	.	.	weak	C|0.999;T|0.001	0.001	PASS	Atlas-SNP
FN1	2335	hgsc.bcm.edu	hg19	2	216269139	216269139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	FN1	NM_212476	exon20	c.C3226T	p.P1076S	CTTTGGGGCTCTC	.	112.0	32.0	95.0	0.0	.	521	.	.	.	none	.	.	PASS	Atlas-SNP
COL4A3	1285	hgsc.bcm.edu	hg19	2	228172490	228172490	+	Silent	SNP	A	A	C	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	COL4A3	NM_000091	exon48	c.A4317C	p.A1439A	ACCTGCAACCTGG	.	293.0	168.0	290.0	0.0	.	293	.	.	.	none	.	.	PASS	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	hg19	2	241696846	241696846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	KIF1A	NM_001244008	exon27	c.G2748T	p.E916D	ATCCTCCTCCTCC	.	110.0	6.0	76.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
SH3TC1	54436	hgsc.bcm.edu	hg19	4	8238155	8238155	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	SH3TC1	NM_018986	exon16	c.G3556C	p.G1186R	ACCCTGGGTAAGC	.	154.0	58.0	225.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP24	83478	hgsc.bcm.edu	hg19	4	86491717	86491717	+	Missense_Mutation	SNP	C	C	T	rs377269441		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	ARHGAP24	NM_001025616	exon2	c.C23T	p.T8M	ACTCCACGGAGAA	.	60.0	26.0	74.0	0.0	.	116	.	.	.	weak	.	.	PASS	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	hg19	5	60839459	60839459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	ZSWIM6	NM_020928	exon14	c.C2963T	p.A988V	AGTGTGCCATGAA	.	57.0	28.0	59.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
CD180	4064	hgsc.bcm.edu	hg19	5	66479374	66479374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	CD180	NM_005582	exon3	c.C1297A	p.H433N	TAATGTGTAAGCG	.	78.0	28.0	92.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
KDM3B	51780	hgsc.bcm.edu	hg19	5	137728920	137728920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	KDM3B	NM_016604	exon9	c.C2690T	p.P897L	GAGAGCCCTTCCT	.	78.0	41.0	95.0	0.0	.	177	.	.	.	none	.	.	PASS	Atlas-SNP
WWC1	23286	hgsc.bcm.edu	hg19	5	167881045	167881045	+	Silent	SNP	A	A	G	rs116415672	bycluster	TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	WWC1	NM_015238	exon18	c.A2598G	p.G866G	GGAGGGAGAAGAG	.	74.0	18.0	78.0	0.0	.	98	.	.	.	weak	.	.	PASS	Atlas-SNP
MMS22L	253714	hgsc.bcm.edu	hg19	6	97702477	97702477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	MMS22L	NM_198468	exon10	c.G1075A	p.A359T	ATGATGCTACATG	.	63.0	24.0	112.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
TTYH3	80727	hgsc.bcm.edu	hg19	7	2671817	2671817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	TTYH3	NM_025250	exon1	c.T28C	p.W10R	GCGCCCTGGTGGG	.	72.0	28.0	61.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
KCTD7	154881	hgsc.bcm.edu	hg19	7	66103373	66103373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	KCTD7	NM_001167961	exon3	c.G448A	p.E150K	AAGGGCGAGAAGG	.	224.0	60.0	147.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
PAXIP1	22976	hgsc.bcm.edu	hg19	7	154760427	154760427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	PAXIP1	NM_007349	exon7	c.A1484T	p.H495L	AGGGCATGCTGCT	.	31.0	13.0	25.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
NCOA2	10499	hgsc.bcm.edu	hg19	8	71040937	71040937	+	Silent	SNP	C	C	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	NCOA2	NM_006540	exon17	c.G3603A	p.Q1201Q	ACAGACCTGCTGT	.	26.0	9.0	45.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
SC5D	6309	hgsc.bcm.edu	hg19	11	121174116	121174116	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	.	NM_001024956	exon2	c.A32T	p.Y11F	ATTACTATTTTTT	.	58.0	20.0	83.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KRT3	3850	hgsc.bcm.edu	hg19	12	53183951	53183951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	KRT3,rectum,carcinoma,0,2	KRT3	NM_057088	exon9	c.G1762A	p.G588S	CAAAGCCGCTGCC	.	36.0	4.0	25.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
METTL21C	196541	hgsc.bcm.edu	hg19	13	103343200	103343200	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	METTL21C	NM_001010977	exon2	c.A245T	p.E82V	ATGGATTCCTGGA	.	115.0	55.0	129.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	hg19	15	88576204	88576204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	NTRK3	NM_001012338	exon14	c.C1469A	p.T490K	GAGGGCGTGGTGA	.	34.0	12.0	36.0	0.0	.	587	.	.	.	none	.	.	PASS	Atlas-SNP
RECQL5	9400	hgsc.bcm.edu	hg19	17	73654500	73654500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	RECQL5	NM_001003715	exon7	c.T1027C	p.Y343H	GGTAGTACCCAGC	.	73.0	24.0	68.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
CEACAM3	1084	hgsc.bcm.edu	hg19	19	42314872	42314872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	CEACAM3	NM_001815	exon6	c.G630A	p.M210I	ACAGATGTCCCCT	.	48.0	19.0	93.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS1	9510	hgsc.bcm.edu	hg19	21	28213400	28213400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	ADAMTS1	NM_006988	exon4	c.C1295T	p.S432L	AGCATTGACGCCA	.	88.0	35.0	109.0	0.0	.	131	.	.	.	none	.	.	PASS	Atlas-SNP
KCNJ15	3772	hgsc.bcm.edu	hg19	21	39671219	39671219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	KCNJ15	NM_170736	exon3	c.C36A	p.D12E	CACCCCCCTGGTG	.	116.0	39.0	155.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
PSMG1	8624	hgsc.bcm.edu	hg19	21	40555300	40555300	+	Silent	SNP	C	C	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	PSMG1	NM_203433	exon1	c.G12A	p.T4T	GAAGAACGTGGCC	.	32.0	14.0	24.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
SREBF2	6721	hgsc.bcm.edu	hg19	22	42274013	42274013	+	Silent	SNP	C	C	T	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	SREBF2	NM_004599	exon9	c.C1647T	p.V549V	GATTGTCCTGAGC	.	55.0	21.0	78.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF462	58499	hgsc.bcm.edu	hg19	9	109736499	109736500	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	ZNF462	NM_021224	exon9	c.6776_6777del	p.2259_2259del	.	.	66.0	11.0	84.0	0.0	.	322	.	0.166667	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF257	113835	hgsc.bcm.edu	hg19	19	22272080	22272084	+	Frame_Shift_Del	DEL	ACTGG	ACTGG	-	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	ACTGG	ACTGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	ZNF257	NM_033468	exon4	c.1527_1531del	p.509_511del	.	.	66.0	19.0	73.0	0.0	.	156	.	0.287879	0	none	.	.	PASS	Atlas-Indel,Pindel
SNRNP200	23020	hgsc.bcm.edu	hg19	2	96950320	96950340	+	Frame_Shift_Del	DEL	ATACCTGGCGGGCAGAGGAGG	ATACCTGGCGGGCAGAGGAGG	-	novel		TCGA-B3-A6W5-01A-12D-A33Q-10	TCGA-B3-A6W5-10A-01D-A33Q-10	ATACCTGGCGGGCAGAGGAGG	ATACCTGGCGGGCAGAGGAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ec2328b7-a0f9-49c8-b4e9-a58bbe773253	2943c0fb-d6d4-4cfb-af57-36d91e6005ba	.	SNRNP200	NM_014014	exon31	c.4165_4169del	p.1389_1390del	.	.	42.0	16.0	51.0	0.0	.	195	.	0.380952	0	none	.	.	PASS	Atlas-Indel,Pindel
