Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ARHGEF10L	55160	hgsc.bcm.edu	hg19	1	18023596	18023596	+	Silent	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	ARHGEF10L	NM_018125	exon29	c.G3561A	p.L1187L	CCCGCTGCTCTCC	.	25.0	12.0	25.0	0.0	.	219	.	.	.	none	.	.	PASS	Atlas-SNP
TMCO4	255104	hgsc.bcm.edu	hg19	1	20063898	20063898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	TMCO4	NM_181719	exon13	c.T1231C	p.Y411H	AGAAGTAGATGAC	.	160.0	91.0	113.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
TAL1	6886	hgsc.bcm.edu	hg19	1	47685450	47685450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	TAL1	NM_003189	exon4	c.C938A	p.T313K	CGGGCCGTGTGTT	.	74.0	38.0	53.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
SYDE2	84144	hgsc.bcm.edu	hg19	1	85656155	85656155	+	Silent	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	SYDE2	NM_032184	exon2	c.A1026G	p.V342V	GTTACATACCACA	.	74.0	35.0	63.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
HS2ST1	9653	hgsc.bcm.edu	hg19	1	87569257	87569257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	HS2ST1	NM_012262	exon6	c.G829A	p.E277K	GCTACTGAACTCT	.	239.0	106.0	239.0	1.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC8C	84230	hgsc.bcm.edu	hg19	1	90179254	90179254	+	Silent	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	LRRC8C	NM_032270	exon3	c.T1125C	p.H375H	GCTTCATATGATA	.	102.0	36.0	93.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
BTBD8	284697	hgsc.bcm.edu	hg19	1	92612759	92612759	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	BTBD8	NM_183242	exon8	c.C953G	p.S318C	TGACGTCTATACT	.	163.0	70.0	146.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC19	25790	hgsc.bcm.edu	hg19	1	159846354	159846354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	CCDC19	NM_012337	exon10	c.G1344T	p.R448S	AAGAATCCTCTCG	.	36.0	19.0	36.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
USF1	7391	hgsc.bcm.edu	hg19	1	161011449	161011449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	USF1	NM_001276373	exon6	c.C464T	p.P155L	GTGCCAGGAGGGG	.	77.0	25.0	67.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
NIT1	4817	hgsc.bcm.edu	hg19	1	161090529	161090529	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	NIT1	NM_005600	exon7	c.G958C	p.G320R	CTCTATGGCAATC	.	81.0	30.0	75.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
PRRC2C	23215	hgsc.bcm.edu	hg19	1	171553267	171553267	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	.	NM_015172	exon29	c.C7576T	p.Q2526X	GAACATCAACTGG	.	339.0	150.0	266.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
AXDND1	126859	hgsc.bcm.edu	hg19	1	179503894	179503894	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	AXDND1	NM_144696	exon25	c.A2828T	p.E943V	AGGCAGAGGAGAA	.	128.0	52.0	140.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
CAPN9	10753	hgsc.bcm.edu	hg19	1	230907780	230907780	+	Silent	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	CAPN9	NM_006615	exon7	c.A810G	p.R270R	CCAGAGAATCGAG	.	133.0	57.0	145.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
ATAD2B	54454	hgsc.bcm.edu	hg19	2	24046400	24046400	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	ATAD2B	NM_001242338	exon16	c.C1859G	p.A620G	AGGGCGGCTTCAG	.	67.0	31.0	64.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
C2orf44	80304	hgsc.bcm.edu	hg19	2	24262142	24262142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	C2orf44	NM_025203	exon2	c.G223T	p.V75F	GTAGAACAGGTGT	.	66.0	30.0	49.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
ASPRV1	151516	hgsc.bcm.edu	hg19	2	70188627	70188627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	ASPRV1	NM_152792	exon1	c.T194C	p.L65P	CCACAGAGCAGTG	.	58.0	24.0	60.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
SPOPL	339745	hgsc.bcm.edu	hg19	2	139318408	139318408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	SPOPL	NM_001001664	exon8	c.G748A	p.V250I	CCTGAAGTTTTTA	.	118.0	58.0	101.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC141	285025	hgsc.bcm.edu	hg19	2	179701991	179701991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	CCDC141	NM_173648	exon23	c.C3955T	p.H1319Y	CTGGATGTTCAGC	.	91.0	37.0	77.0	0.0	.	362	.	.	.	none	.	.	PASS	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225670917	225670917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	DOCK10	NM_014689	exon34	c.A3740G	p.Q1247R	TGGCTTTGAAATC	.	58.0	28.0	52.0	0.0	.	308	.	.	.	none	.	.	PASS	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238262001	238262001	+	Missense_Mutation	SNP	C	C	G	rs138588234	alternate_allele	TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	COL6A3,arm,malignant_melanoma,0,1	COL6A3	NM_004369	exon25	c.G6673C	p.G2225R	TGGTCCCCTGCTC	.	81.0	0.0	52.0	0.0	.	608	.	.	.	alt	.	.	PASS	Atlas-SNP
GADL1	339896	hgsc.bcm.edu	hg19	3	30819676	30819676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	GADL1	NM_207359	exon14	c.A1387G	p.N463D	CCAAATTAAGTTT	.	173.0	45.0	107.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47158197	47158197	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	SETD2_ENST00000409792,NS,carcinoma,-1,6	SETD2	NM_014159	exon4	c.G4502C	p.C1501S	GGTGTACACTCAC	.	188.0	106.0	113.0	0.0	.	721	.	.	.	none	.	.	PASS	Atlas-SNP
USP19	10869	hgsc.bcm.edu	hg19	3	49149414	49149414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	USP19	NM_001199161	exon20	c.T2833C	p.F945L	CCAGGAAGGGGTA	.	97.0	39.0	47.0	0.0	.	158	.	.	.	none	.	.	PASS	Atlas-SNP
ACOX2	8309	hgsc.bcm.edu	hg19	3	58514651	58514651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	ACOX2	NM_003500	exon9	c.C1025T	p.T342I	TGTTGTGTCTGGT	.	115.0	48.0	66.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
IQCB1	9657	hgsc.bcm.edu	hg19	3	121500645	121500645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	IQCB1	NM_001023570	exon13	c.A1355G	p.D452G	CGTGCATCAGTGA	.	259.0	153.0	165.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
MBNL1	4154	hgsc.bcm.edu	hg19	3	152165476	152165476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	MBNL1	NM_207293	exon6	c.C929A	p.T310N	GTGCCACCGCAGT	.	146.0	6.0	160.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
WDR19	57728	hgsc.bcm.edu	hg19	4	39196261	39196261	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	WDR19	NM_025132	exon5	c.C388G	p.R130G	ACATCTCGAAAGA	.	35.0	5.0	34.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
ARSJ	79642	hgsc.bcm.edu	hg19	4	114823444	114823444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	ARSJ	NM_024590	exon2	c.G1786A	p.V596I	AAGTAACACCTGA	.	78.0	33.0	68.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
SLC45A2	51151	hgsc.bcm.edu	hg19	5	33982376	33982376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	SLC45A2	NM_016180	exon2	c.A527G	p.K176R	TTCTCCTTGTCCT	.	72.0	22.0	67.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
PPIP5K2	23262	hgsc.bcm.edu	hg19	5	102503901	102503901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	PPIP5K2	NM_015216	exon18	c.A2188G	p.I730V	GACTGTATAAAAT	.	257.0	117.0	229.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
SRP19	6728	hgsc.bcm.edu	hg19	5	112200371	112200371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	SRP19	NM_001204196	exon3	c.A167G	p.E56G	AGGCAGAGTCCGG	.	105.0	46.0	99.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
FOXF2	2295	hgsc.bcm.edu	hg19	6	1390675	1390675	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	FOXF2	NM_001452	exon1	c.C493G	p.L165V	AAGGGCCTCGGGC	.	162.0	66.0	155.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
GMPR	2766	hgsc.bcm.edu	hg19	6	16254914	16254914	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	GMPR	NM_006877	exon4	c.T413A	p.F138Y	AACATTTTGTGGA	.	199.0	94.0	169.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
RBM24	221662	hgsc.bcm.edu	hg19	6	17292212	17292212	+	Silent	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	RBM24	NM_001143942	exon4	c.G573A	p.G191G	TGCTGGGGGCTAT	.	30.0	10.0	31.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
DDX43	55510	hgsc.bcm.edu	hg19	6	74119027	74119027	+	Silent	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	DDX43	NM_018665	exon10	c.G1236A	p.K412K	AATGAAGATTTTG	.	204.0	102.0	203.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
AMD1	262	hgsc.bcm.edu	hg19	6	111213404	111213404	+	Silent	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	AMD1	NM_001634	exon5	c.T468C	p.C156C	TGACTGTTGGTAT	.	337.0	170.0	308.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
SLC2A12	154091	hgsc.bcm.edu	hg19	6	134350343	134350343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	SLC2A12	NM_145176	exon2	c.G620T	p.G207V	AAAACTCCCAAGG	.	155.0	9.0	119.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
DYNC1I1	1780	hgsc.bcm.edu	hg19	7	95668696	95668696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	DYNC1I1	NM_004411	exon14	c.C1523T	p.S508L	TCACATCATCATT	.	184.0	123.0	118.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
DLX5	1749	hgsc.bcm.edu	hg19	7	96651541	96651541	+	Missense_Mutation	SNP	C	C	G	rs376488297	alternate_allele	TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	DLX5	NM_005221	exon2	c.G496C	p.E166Q	CGCGTTCCGGCAA	.	296.0	59.0	231.0	0.0	.	52	.	.	.	alt	.	.	PASS	Atlas-SNP
STAG3	10734	hgsc.bcm.edu	hg19	7	99800113	99800113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	STAG3	NM_012447	exon25	c.T2600C	p.L867P	AGCGGCTACACCA	.	382.0	242.0	254.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
PSMC2	5701	hgsc.bcm.edu	hg19	7	103002482	103002482	+	Silent	SNP	G	G	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	PSMC2	NM_001204453	exon5	c.G369T	p.V123V	TGTGGTGGACCTT	.	170.0	60.0	102.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
WEE2	494551	hgsc.bcm.edu	hg19	7	141408685	141408685	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	WEE2	NM_001105558	exon1	c.A127T	p.K43X	CCAGAGAAGGGTG	.	341.0	193.0	265.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	hg19	8	41794928	41794928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	.	NM_001099412	exon17	c.G3198T	p.E1066D	ATCGATCTCAAAC	.	157.0	64.0	175.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SLURP1	57152	hgsc.bcm.edu	hg19	8	143822661	143822661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	SLURP1,NS,carcinoma,0,1	SLURP1	NM_020427	exon3	c.G212T	p.R71L	CAGGAGCGGGTCA	.	36.0	2.0	23.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
PRSS3	5646	hgsc.bcm.edu	hg19	9	33797829	33797829	+	Missense_Mutation	SNP	G	G	A	rs138654302		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	PRSS3_ENST00000361005,NS,carcinoma,0,2	PRSS3	NM_007343	exon3	c.G374A	p.R125H	TCAGCCGCATCCA	.	131.0	41.0	94.0	1.0	.	79	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
CCIN	881	hgsc.bcm.edu	hg19	9	36169599	36169599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	CCIN	NM_005893	exon1	c.G100A	p.V34M	CTGAGTGTGGACA	.	101.0	10.0	67.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
PTCH1	5727	hgsc.bcm.edu	hg19	9	98229471	98229471	+	Silent	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	PTCH1	NM_000264	exon15	c.G2487T	p.V829V	ATACTTCACGTTA	.	152.0	64.0	118.0	0.0	.	1850	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM246	84302	hgsc.bcm.edu	hg19	9	104238602	104238602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	.	NM_032342	exon2	c.A773G	p.E258G	ATGGGCTCTGGAT	.	159.0	72.0	152.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
C5	727	hgsc.bcm.edu	hg19	9	123742457	123742457	+	Silent	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	C5	NM_001735	exon28	c.T3562C	p.L1188L	TGGCCAATGTAAA	.	103.0	42.0	93.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
BRD3	8019	hgsc.bcm.edu	hg19	9	136915699	136915699	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	BRD3	NM_007371	exon5	c.G511C	p.V171L	CCGCCACTTGCTG	.	69.0	34.0	76.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
KLF6	1316	hgsc.bcm.edu	hg19	10	3823844	3823844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	KLF6	NM_001160125	exon2	c.G665T	p.R222L	TGCGTCCGCTGGT	.	35.0	20.0	38.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	hg19	10	21804183	21804183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	.	NM_207371	exon4	c.A2569G	p.I857V	CAATAATGAGTGA	.	54.0	27.0	47.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	hg19	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	C10orf140_ENST00000449193,rectum,carcinoma,0,4	.	NM_207371	exon4	c.G1266A	p.E422E	TTCCTCCTCCTCC	.	9.0	6.0	2.0	2.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24762791	24762791	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	KIAA1217	NM_019590	exon6	c.G1481C	p.G494A	CCCACGGCCCCCC	.	132.0	55.0	143.0	0.0	.	235	.	.	.	none	.	.	PASS	Atlas-SNP
HERC4	26091	hgsc.bcm.edu	hg19	10	69714847	69714847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	HERC4	NM_022079	exon19	c.T2090C	p.L697P	AGAAAAAGAGAGG	.	98.0	28.0	91.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
CCAR1	55749	hgsc.bcm.edu	hg19	10	70513756	70513756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	CCAR1	NM_018237	exon11	c.G1266A	p.M422I	TGTAATGCACAGA	.	183.0	82.0	171.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
POLR3A	11128	hgsc.bcm.edu	hg19	10	79745045	79745045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	POLR3A	NM_007055	exon24	c.G3125A	p.G1042D	GGCTCACCAATGC	.	200.0	75.0	196.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
GRK5	2869	hgsc.bcm.edu	hg19	10	120967430	120967430	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	GRK5	NM_005308	exon1	c.A1T	p.M1L	CTGTCAATGGAGC	.	29.0	16.0	21.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
SLC5A12	159963	hgsc.bcm.edu	hg19	11	26720065	26720065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	SLC5A12	NM_178498	exon7	c.T839C	p.L280S	CCCAGCAAGTTAA	.	57.0	35.0	43.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
CAPRIN1	4076	hgsc.bcm.edu	hg19	11	34118752	34118752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	CAPRIN1	NM_203364	exon17	c.A1910G	p.D637G	GATATGATGGTTA	.	97.0	45.0	105.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
C11orf82	220042	hgsc.bcm.edu	hg19	11	82642927	82642927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	C11orf82,NS,carcinoma,0,1	C11orf82	NM_145018	exon6	c.C547A	p.Q183K	TTCCATCAACTTT	.	257.0	95.0	284.0	1.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
MRE11A	4361	hgsc.bcm.edu	hg19	11	94224022	94224022	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	MRE11A	NM_005591	exon3	c.T130G	p.L44V	GTCTTAAAATTTC	.	174.0	65.0	154.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103124155	103124155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	DYNC2H1	NM_001080463	exon67	c.C10205T	p.T3402I	CTACAACAAGAAG	.	116.0	35.0	95.0	0.0	.	246	.	.	.	none	.	.	PASS	Atlas-SNP
IL10RA	3587	hgsc.bcm.edu	hg19	11	117869597	117869597	+	Silent	SNP	A	A	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	IL10RA	NM_001558	exon7	c.A978T	p.P326P	CAAGCCATCCCTG	.	86.0	31.0	96.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
HSPA8	3312	hgsc.bcm.edu	hg19	11	122930940	122930940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	HSPA8	NM_006597	exon4	c.T448C	p.F150L	CATTAAAGTAAGC	.	109.0	47.0	109.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
ERC1	23085	hgsc.bcm.edu	hg19	12	1219488	1219488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	ERC1	NM_178039	exon5	c.G1292A	p.S431N	ATCGGAGCCATTC	.	110.0	50.0	71.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
CASC1	55259	hgsc.bcm.edu	hg19	12	25308273	25308273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	CASC1	NM_001082972	exon5	c.T446C	p.L149S	TGTTTCAATTTCT	.	78.0	31.0	71.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
DIP2B	57609	hgsc.bcm.edu	hg19	12	51138542	51138542	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	DIP2B	NM_173602	exon38	c.G4651T	p.G1551X	TCCAGAGGAGAGA	.	89.0	50.0	58.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
LRCH1	23143	hgsc.bcm.edu	hg19	13	47269134	47269134	+	Silent	SNP	G	G	A	rs201892262	bycluster	TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	LRCH1	NM_015116	exon9	c.G1227A	p.S409S	CCATTCGGAATTT	.	177.0	86.0	211.0	0.0	.	104	.	.	.	weak	G|0.999;A|0.001	0.001	PASS	Atlas-SNP
COCH	1690	hgsc.bcm.edu	hg19	14	31348144	31348144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	COCH	NM_004086	exon5	c.G367T	p.V123L	TTCACAGTAACTA	.	171.0	77.0	171.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
C14orf105	55195	hgsc.bcm.edu	hg19	14	57938247	57938247	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	C14orf105	NM_018168	exon6	c.A717C	p.K239N	GCCAATTTTCCAG	.	54.0	27.0	60.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
DPF3	8110	hgsc.bcm.edu	hg19	14	73137911	73137911	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	DPF3	NM_012074	exon9	c.C1007G	p.P336R	GAGCGAGGCTCTT	.	64.0	19.0	43.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
SERPINA3	12	hgsc.bcm.edu	hg19	14	95081284	95081284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	SERPINA3	NM_001085	exon2	c.A506G	p.D169G	CCACTGACTTTCA	.	79.0	39.0	61.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
JAG2	3714	hgsc.bcm.edu	hg19	14	105621904	105621904	+	Silent	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	JAG2	NM_145159	exon5	c.G783A	p.E261E	CCTGCACTCCCCA	.	155.0	78.0	123.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
RAB8B	51762	hgsc.bcm.edu	hg19	15	63548782	63548782	+	Nonsense_Mutation	SNP	A	A	T	rs202115341	by1000genomes;alternate_allele	TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	RAB8B	NM_016530	exon5	c.A403T	p.R135X	AAAGAAAGAGGGG	.	84.0	42.0	86.0	0.0	.	23	.	.	.	alt	A|1.000;G|0.000	.	PASS	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63953965	63953965	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	HERC1	NM_003922	exon45	c.A9157C	p.T3053P	AACTTGTTGACTT	.	134.0	53.0	120.0	0.0	.	624	.	.	.	none	.	.	PASS	Atlas-SNP
BNC1	646	hgsc.bcm.edu	hg19	15	83935687	83935687	+	Silent	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	BNC1	NM_001717	exon3	c.G336T	p.L112L	CCGGTCCAGTAGG	.	155.0	78.0	115.0	0.0	.	149	.	.	.	none	.	.	PASS	Atlas-SNP
SMCR8	140775	hgsc.bcm.edu	hg19	17	18220177	18220177	+	Silent	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	SMCR8	NM_144775	exon1	c.T1074C	p.D358D	GATTGATAGAGCA	.	158.0	50.0	90.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0100	9703	hgsc.bcm.edu	hg19	17	26943748	26943748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	KIAA0100	NM_014680	exon35	c.C6045G	p.I2015M	CAGCTGGATGGTG	.	157.0	98.0	89.0	0.0	.	175	.	.	.	none	.	.	PASS	Atlas-SNP
SSH2	85464	hgsc.bcm.edu	hg19	17	27959406	27959406	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	SSH2	NM_033389	exon15	c.G2725C	p.A909P	TTGGTGCTAGGTC	.	614.0	355.0	401.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF830	91603	hgsc.bcm.edu	hg19	17	33289325	33289325	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	ZNF830	NM_052857	exon1	c.C740G	p.P247R	CGTTACCGGAAGG	.	90.0	55.0	62.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
LIG3	3980	hgsc.bcm.edu	hg19	17	33310454	33310454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	LIG3	NM_013975	exon2	c.T430C	p.F144L	TGCATGTTTGAGA	.	66.0	42.0	22.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
SLC35G3	146861	hgsc.bcm.edu	hg19	17	33520712	33520712	+	Silent	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	.	NM_152462	exon1	c.G615A	p.L205L	AAGCCTCAGGGAC	.	240.0	168.0	173.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
STK11	6794	hgsc.bcm.edu	hg19	19	1220439	1220439	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	STK11	NM_000455	exon4	c.A532T	p.K178X	GACATCAAGCCGG	.	18.0	9.0	21.0	0.0	.	410	.	.	.	none	.	.	PASS	Atlas-SNP
EPS15L1	58513	hgsc.bcm.edu	hg19	19	16513268	16513268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	EPS15L1	NM_021235	exon16	c.A1655G	p.E552G	CGGCTTTCATGCA	.	115.0	51.0	68.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF676	163223	hgsc.bcm.edu	hg19	19	22363129	22363129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	ZNF676	NM_001001411	exon3	c.T1390G	p.F464V	TAGTAAAGCTTGA	.	248.0	103.0	255.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF416	55659	hgsc.bcm.edu	hg19	19	58083736	58083736	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	ZNF416	NM_017879	exon4	c.C1536G	p.H512Q	TTTCTGGTGTTCA	.	140.0	65.0	137.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF416	55659	hgsc.bcm.edu	hg19	19	58083765	58083765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	ZNF416	NM_017879	exon4	c.T1507C	p.F503L	GTCTAAAAAATTT	.	138.0	64.0	124.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
REM1	28954	hgsc.bcm.edu	hg19	20	30064536	30064536	+	Silent	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	REM1	NM_014012	exon2	c.G288A	p.L96L	CAGCTTGGCCAGC	.	47.0	27.0	43.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
PIGU	128869	hgsc.bcm.edu	hg19	20	33163023	33163023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	PIGU	NM_080476	exon11	c.G1079A	p.C360Y	ATGATGCAGGTGA	.	47.0	19.0	59.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
CSTF1	1477	hgsc.bcm.edu	hg19	20	54974310	54974310	+	Silent	SNP	T	T	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	CSTF1	NM_001033522	exon5	c.T933A	p.S311S	TTGTTCTGCCATT	.	134.0	61.0	137.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
KCNJ15	3772	hgsc.bcm.edu	hg19	21	39671714	39671714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	KCNJ15	NM_002243	exon4	c.A531T	p.E177D	TGAGACCATCAAG	.	70.0	26.0	74.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC157	550631	hgsc.bcm.edu	hg19	22	30771620	30771620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	CCDC157	NM_001017437	exon10	c.A1825G	p.I609V	TCCAAAATCCGGG	.	50.0	4.0	40.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
ND2	0	hgsc.bcm.edu	hg19	MT	4838	4838	+	Silent	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	.	ENST00000361453	exon1	c.T369C	p.P123P	CACCCCTCTGACA	.	11.0	11.0	2.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PGBD2	267002	hgsc.bcm.edu	hg19	1	249211266	249211267	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	PGBD2	NM_170725	exon3	c.483_484insA	p.T161fs	.	.	241.0	105.0	213.0	0.0	.	103	.	0.435685	0	none	.	.	PASS	Atlas-INDEL
TDRD5	163589	hgsc.bcm.edu	hg19	1	179609125	179609129	+	Frame_Shift_Del	DEL	GTGTT	GTGTT	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	GTGTT	GTGTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	TDRD5	NM_001199085	exon10	c.1671_1675del	p.557_559del	.	.	268.0	75.0	306.0	0.0	.	149	.	0.279851	0	none	.	.	PASS	Atlas-INDEL
PKP4	8502	hgsc.bcm.edu	hg19	2	159537000	159537001	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	PKP4	NM_003628	exon22	c.3390_3391insT	p.R1130fs	.	.	173.0	88.0	138.0	0.0	.	133	.	0.508671	0	none	.	.	PASS	Atlas-INDEL
FOLH1	2346	hgsc.bcm.edu	hg19	11	49175458	49175458	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	FOLH1	NM_004476	exon17	c.1911delG	p.K637fs	.	.	108.0	44.0	95.0	0.0	.	141	.	0.407407	0	none	.	.	PASS	Atlas-INDEL
PARP4	143	hgsc.bcm.edu	hg19	13	25009395	25009395	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	PARP4	NM_006437	exon31	c.3885delA	p.P1295fs	.	.	129.0	54.0	137.0	0.0	.	142	.	0.418605	0	none	.	.	PASS	Atlas-INDEL
MFGE8	4240	hgsc.bcm.edu	hg19	15	89449052	89449053	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	MFGE8	NM_001114614	exon5	c.621_622insTT	p.L207fs	.	.	186.0	70.0	137.0	0.0	.	60	.	0.376344	0	none	.	.	PASS	Atlas-INDEL
PAIP1	10605	hgsc.bcm.edu	hg19	5	43555937	43555937	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	PAIP1	NM_006451	exon2	c.431delA	p.Y144fs	.	.	305.0	121.0	234.0	0.0	.	46	.	0.396721	0	none	.	.	PASS	Atlas-INDEL
LINS	55180	hgsc.bcm.edu	hg19	15	101114203	101114205	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	LINS	NM_001040616	exon5	c.874_876del	p.292_292del	.	.	67.0	27.0	59.0	0.0	.	62	.	0.402985	0	none	.	.	PASS	Atlas-INDEL
TSHZ2	128553	hgsc.bcm.edu	hg19	20	51871026	51871026	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	TSHZ2	NM_173485	exon2	c.1028delC	p.S343fs	.	.	222.0	105.0	154.0	0.0	.	209	.	0.472973	0	none	.	.	PASS	Atlas-INDEL
HAS2	3037	hgsc.bcm.edu	hg19	8	122627047	122627047	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	HAS2	NM_005328	exon4	c.962delT	p.V321fs	.	.	241.0	116.0	196.0	0.0	.	87	.	0.481328	0	none	.	.	PASS	Atlas-INDEL
RAB28	9364	hgsc.bcm.edu	hg19	4	13481115	13481115	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	.	RAB28	NM_004249	exon2	c.112delG	p.G38fs	.	.	97.0	40.0	69.0	0.0	.	56	.	0.412371	0	none	.	.	PASS	Atlas-INDEL
