Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TAS1R2	80834	hgsc.bcm.edu	hg19	1	19166252	19166252	+	Silent	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TAS1R2	NM_152232	exon6	c.G2361C	p.L787L	GGTGACCAGCACC	.	37.0	16.0	50.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
AGO1	26523	hgsc.bcm.edu	hg19	1	36354062	36354062	+	Silent	SNP	G	G	A	rs79428335	bycluster;alternate_allele	TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	.	NM_012199	exon2	c.G60A	p.V20V	GCAGGTGTTCCAG	.	107.0	30.0	124.0	0.0	.	.	.	.	.	alt	.	.	PASS	Atlas-SNP
RPRD2	23248	hgsc.bcm.edu	hg19	1	150390094	150390094	+	Silent	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	RPRD2	NM_015203	exon2	c.T228C	p.N76N	TTTGAATCTCTTT	.	284.0	97.0	298.0	0.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
SLC9C2	284525	hgsc.bcm.edu	hg19	1	173545857	173545857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	SLC9A11,colon,carcinoma,0,1	.	NM_178527	exon8	c.T845C	p.V282A	AGTCCTACAGCGG	.	59.0	3.0	67.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186158954	186158954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	HMCN1	NM_031935	exon107	c.A16852G	p.I5618V	GGGACCATTGAAT	.	115.0	31.0	119.0	0.0	.	797	.	.	.	none	.	.	PASS	Atlas-SNP
LRRN2	10446	hgsc.bcm.edu	hg19	1	204588079	204588079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	LRRN2	NM_006338	exon3	c.A1042G	p.S348G	AGGCACTGAGAGC	.	37.0	10.0	45.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
URB2	9816	hgsc.bcm.edu	hg19	1	229771856	229771856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	URB2,NS,carcinoma,0,2	URB2	NM_014777	exon4	c.C1496T	p.S499F	TACTCTCTGCATG	.	174.0	57.0	199.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
SLC3A1	6519	hgsc.bcm.edu	hg19	2	44507998	44507998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SLC3A1	NM_000341	exon2	c.G574T	p.D192Y	ATGGAAGATTTTG	.	125.0	37.0	147.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
PNPT1	87178	hgsc.bcm.edu	hg19	2	55908004	55908004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PNPT1	NM_033109	exon6	c.T503C	p.L168P	ATTGCTAGGACAT	.	78.0	23.0	123.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
FANCL	55120	hgsc.bcm.edu	hg19	2	58431304	58431304	+	Silent	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FANCL	NM_018062	exon6	c.T432C	p.S144S	TCTACCAGAAGCA	.	166.0	45.0	197.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
THNSL2	55258	hgsc.bcm.edu	hg19	2	88482283	88482283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	THNSL2	NM_018271	exon5	c.A868G	p.I290V	AATGACATCATCC	.	88.0	27.0	103.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM43	129868	hgsc.bcm.edu	hg19	2	96260855	96260855	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TRIM43	NM_138800	exon3	c.A469T	p.N157Y	CAGAGAAATCTAT	.	46.0	14.0	66.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
ZEB2	9839	hgsc.bcm.edu	hg19	2	145156027	145156027	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZEB2	NM_014795	exon8	c.C2727T	p.F909F	TGGCATGAAAGTA	.	172.0	60.0	240.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
LY75-CD302	100526664	hgsc.bcm.edu	hg19	2	160637446	160637446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	.	NM_001198759	exon36	c.A5165G	p.K1722R	CATTGCTTTTTCA	.	103.0	27.0	116.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
UBR3	130507	hgsc.bcm.edu	hg19	2	170843265	170843265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	UBR3_ENST00000272793,NS,carcinoma,0,2	UBR3	NM_172070	exon25	c.C3745G	p.R1249G	GAAGATCGACCTA	.	103.0	29.0	135.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
EXOSC7	23016	hgsc.bcm.edu	hg19	3	45038724	45038724	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	EXOSC7	NM_015004	exon4	c.G400C	p.V134L	TGCTGGGTTCTCT	.	101.0	44.0	85.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
BOC	91653	hgsc.bcm.edu	hg19	3	112991328	112991328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	BOC	NM_033254	exon7	c.A739C	p.S247R	GGCCAGAGTCTCA	.	318.0	73.0	261.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
RPN1	6184	hgsc.bcm.edu	hg19	3	128348859	128348859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	RPN1	NM_002950	exon5	c.G971A	p.G324D	CACCCGCCAAAGA	.	87.0	41.0	68.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142268491	142268491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ATR	NM_001184	exon15	c.G3001T	p.D1001Y	CAAGATCAGGTAG	.	82.0	37.0	64.0	0.0	.	285	.	.	.	none	.	.	PASS	Atlas-SNP
FBXL5	26234	hgsc.bcm.edu	hg19	4	15640266	15640266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FBXL5	NM_001193534	exon4	c.A448G	p.I150V	TTTTAATATCCTT	.	65.0	21.0	73.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
GC	2638	hgsc.bcm.edu	hg19	4	72620174	72620174	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	GC	NM_001204307	exon11	c.C1273T	p.L425L	CACATAGTTCTTG	.	54.0	16.0	45.0	0.0	.	132	.	.	.	none	.	.	PASS	Atlas-SNP
TERT	7015	hgsc.bcm.edu	hg19	5	1282605	1282605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TERT	NM_001193376	exon3	c.A1708C	p.K570Q	TGTTCTTTTGAAA	.	51.0	13.0	79.0	0.0	.	2594	.	.	.	none	.	.	PASS	Atlas-SNP
CDH6	1004	hgsc.bcm.edu	hg19	5	31323226	31323226	+	Silent	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	CDH6	NM_004932	exon12	c.T2184G	p.T728T	CCCCACTGCCCCG	.	34.0	5.0	39.0	0.0	.	175	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM36	55521	hgsc.bcm.edu	hg19	5	114515696	114515696	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TRIM36	NM_001017397	exon1	c.C39T	p.I13I	TTCCATGATGTAG	.	137.0	47.0	162.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGA1	56114	hgsc.bcm.edu	hg19	5	140712438	140712438	+	Silent	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	PCDHGA1_ENST00000517417,colon,carcinoma,0,2	PCDHGA1	NM_018912	exon1	c.A2187G	p.G729G	TTCGGGAGGCGGC	.	98.0	37.0	91.0	0.0	.	397	.	.	.	none	.	.	PASS	Atlas-SNP
LARS	51520	hgsc.bcm.edu	hg19	5	145506033	145506033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	LARS	NM_020117	exon28	c.A2956G	p.M986V	TCTTCATGTATTT	.	86.0	24.0	112.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
PDGFRB	5159	hgsc.bcm.edu	hg19	5	149511592	149511592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PDGFRB	NM_002609	exon8	c.C1193A	p.A398D	TGGAAGGCCCGCA	.	53.0	11.0	98.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
PRPF4B	8899	hgsc.bcm.edu	hg19	6	4032504	4032504	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PRPF4B	NM_003913	exon2	c.A753C	p.K251N	AGAGAAAATTGGT	.	188.0	79.0	216.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	hg19	6	30954340	30954340	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MUC21	NM_001010909	exon2	c.A388T	p.S130C	CCCTCCAGTGGGG	.	249.0	57.0	255.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51889440	51889440	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PKHD1	NM_170724	exon32	c.G5168C	p.R1723T	CACCCTCTGATGC	.	97.0	28.0	114.0	0.0	.	927	.	.	.	none	.	.	PASS	Atlas-SNP
LIMK1	3984	hgsc.bcm.edu	hg19	7	73530183	73530183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	LIMK1	NM_002314	exon13	c.G1462A	p.E488K	GTGGACGAGAAGA	.	76.0	22.0	70.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
STYXL1	51657	hgsc.bcm.edu	hg19	7	75633079	75633079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	STYXL1	NM_016086	exon7	c.A694G	p.I232V	TACCAATGAAGTG	.	80.0	47.0	73.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
STYXL1	51657	hgsc.bcm.edu	hg19	7	75643205	75643205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	STYXL1	NM_016086	exon5	c.A308G	p.D103G	ACAAGATCTGAGA	.	189.0	89.0	165.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF786	136051	hgsc.bcm.edu	hg19	7	148767681	148767681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZNF786	NM_152411	exon4	c.C2183A	p.P728H	CTCTCGGGCCTGT	.	297.0	138.0	241.0	1.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
GIMAP6	474344	hgsc.bcm.edu	hg19	7	150325338	150325338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	GIMAP6	NM_001244071	exon3	c.C124T	p.R42C	TAAGACGATGGCT	.	155.0	36.0	137.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52336162	52336162	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PXDNL	NM_144651	exon14	c.G1768C	p.V590L	TGGTCACAGCAAG	.	36.0	17.0	40.0	0.0	.	414	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM67	91147	hgsc.bcm.edu	hg19	8	94797545	94797545	+	Silent	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TMEM67	NM_153704	exon12	c.T1227C	p.Y409Y	TCAATATATTTTG	.	228.0	68.0	269.0	0.0	.	187	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA31C2	645961	hgsc.bcm.edu	hg19	9	90744548	90744548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	.	NM_001166137	exon4	c.A3404G	p.X1135W	AAGGGCTACTGAT	.	250.0	52.0	299.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TOR1A	1861	hgsc.bcm.edu	hg19	9	132576423	132576423	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TOR1A	NM_000113	exon5	c.A827C	p.H276P	TTTAGGTGTTTGT	.	231.0	69.0	263.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
WNT8B	7479	hgsc.bcm.edu	hg19	10	102239758	102239758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	WNT8B	NM_003393	exon3	c.G230A	p.G77E	ATGGTGGGCTTCG	.	31.0	8.0	49.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
PRKRIR	5612	hgsc.bcm.edu	hg19	11	76062971	76062971	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PRKRIR	NM_004705	exon5	c.T1223A	p.L408H	TGAAAAAGAACAG	.	79.0	22.0	83.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
SYTL2	54843	hgsc.bcm.edu	hg19	11	85445140	85445140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SYTL2	NM_001162953	exon6	c.T1232A	p.M411K	GAAGTCATTGGCT	.	156.0	43.0	182.0	0.0	.	231	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS8	11095	hgsc.bcm.edu	hg19	11	130284505	130284505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ADAMTS8	NM_007037	exon5	c.C1487A	p.A496D	CCGTCAGCCCAGG	.	124.0	39.0	170.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26553127	26553127	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ITPR2	NM_002223	exon53	c.C7464T	p.T2488T	CAGCACGGTGACA	.	229.0	53.0	170.0	0.0	.	270	.	.	.	none	.	.	PASS	Atlas-SNP
AMHR2	269	hgsc.bcm.edu	hg19	12	53824991	53824991	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	AMHR2	NM_020547	exon11	c.G1456C	p.D486H	CTAGAAGACTGTT	.	166.0	83.0	193.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
WSCD2	9671	hgsc.bcm.edu	hg19	12	108641980	108641980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	WSCD2	NM_014653	exon9	c.C1558T	p.R520C	TTCAAGCGCTCAG	.	95.0	19.0	80.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39452997	39452997	+	Silent	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FREM2	NM_207361	exon23	c.C8889G	p.T2963T	AGCGACCAGTTTT	.	122.0	35.0	128.0	0.0	.	385	.	.	.	none	.	.	PASS	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23862897	23862897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MYH6	NM_002471	exon22	c.A2906C	p.E969A	TGCTTCTCCTTCT	.	113.0	33.0	142.0	0.0	.	274	.	.	.	none	.	.	PASS	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23897724	23897724	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MYH7	NM_000257	exon15	c.T1563G	p.I521M	GAGGTCAATGCAG	.	82.0	6.0	123.0	0.0	.	349	.	.	.	none	.	.	PASS	Atlas-SNP
RIPK3	11035	hgsc.bcm.edu	hg19	14	24805465	24805465	+	Silent	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	RIPK3	NM_006871	exon10	c.C1473A	p.P491P	TGGTGGGGGGTGC	.	102.0	27.0	138.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
NR2E3	10002	hgsc.bcm.edu	hg19	15	72104834	72104834	+	Silent	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	NR2E3	NM_016346	exon5	c.C730T	p.L244L	TCCAGCCTGCCCT	.	28.0	10.0	17.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	hg19	16	2155892	2155892	+	Silent	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	PKD1,NS,carcinoma,0,1	PKD1	NM_000296	exon20	c.T7837C	p.L2613L	GGGCCAACGAGTA	.	67.0	4.0	48.0	2.0	.	184	.	.	.	none	.	.	PASS	Atlas-SNP
MYLK3	91807	hgsc.bcm.edu	hg19	16	46766187	46766187	+	Silent	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MYLK3	NM_182493	exon4	c.G1395A	p.R465R	CGGAGCCCTGGCT	.	110.0	57.0	70.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
AMFR	267	hgsc.bcm.edu	hg19	16	56435720	56435720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	AMFR	NM_001144	exon8	c.A1010G	p.N337S	TCATTGTTGACAG	.	174.0	85.0	143.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
SMAD4	4089	hgsc.bcm.edu	hg19	18	48581177	48581177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SMAD4	NM_005359	exon5	c.G481A	p.E161K	AAGGATGAATATG	.	86.0	19.0	107.0	0.0	.	822	.	.	.	none	.	.	PASS	Atlas-SNP
SMAD4	4089	hgsc.bcm.edu	hg19	18	48581187	48581187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SMAD4	NM_005359	exon5	c.A491G	p.H164R	ATGTGCATGACTT	.	102.0	26.0	117.0	0.0	.	822	.	.	.	none	.	.	PASS	Atlas-SNP
RNF152	220441	hgsc.bcm.edu	hg19	18	59483577	59483577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	RNF152	NM_173557	exon2	c.G120T	p.Q40H	CATCTGCTGCAGG	.	70.0	29.0	74.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
FZR1	51343	hgsc.bcm.edu	hg19	19	3527659	3527659	+	Silent	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FZR1	NM_001136198	exon6	c.C501A	p.P167P	GAAACCCACCCGC	.	42.0	9.0	60.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
MAP2K2	5605	hgsc.bcm.edu	hg19	19	4117623	4117623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MAP2K2	NM_030662	exon2	c.A97C	p.N33H	CCAGGTTTGCCCT	.	64.0	23.0	103.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
KDM4B	23030	hgsc.bcm.edu	hg19	19	5082513	5082513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	KDM4B	NM_015015	exon9	c.C916A	p.Q306K	GCCACTCAGGTAA	.	38.0	9.0	56.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
KANK2	25959	hgsc.bcm.edu	hg19	19	11304538	11304538	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	KANK2	NM_015493	exon2	c.T218A	p.L73Q	CGGGGCAGCGAGC	.	51.0	19.0	76.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF791	163049	hgsc.bcm.edu	hg19	19	12739559	12739559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZNF791	NM_153358	exon4	c.C1216A	p.H406N	AGAAATCACACTG	.	207.0	77.0	243.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF260	339324	hgsc.bcm.edu	hg19	19	37005333	37005333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZNF260	NM_001166038	exon3	c.C808T	p.H270Y	CAATATGAATTTT	.	134.0	42.0	156.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
FITM2	128486	hgsc.bcm.edu	hg19	20	42935425	42935425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FITM2	NM_001080472	exon2	c.C629A	p.A210D	TAAACAGCTGTGC	.	55.0	18.0	64.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
MYH9	4627	hgsc.bcm.edu	hg19	22	36716872	36716872	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MYH9	NM_002473	exon8	c.T839A	p.L280H	GACAGGAGATAAT	.	40.0	11.0	33.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP
USP9X	8239	hgsc.bcm.edu	hg19	X	40999924	40999924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	USP9X	NM_001039591	exon7	c.C670A	p.L224I	GTGGATCTTCTCA	.	80.0	55.0	57.0	0.0	.	385	.	.	.	none	.	.	PASS	Atlas-SNP
CPSF3	51692	hgsc.bcm.edu	hg19	2	9570989	9570994	+	In_Frame_Del	DEL	TTCTGA	TTCTGA	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	TTCTGA	TTCTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	CPSF3	NM_016207	exon4	c.320_325del	p.107_109del	.	.	133.0	41.0	124.0	0.0	.	63	.	0.308271	0	none	.	.	PASS	Atlas-INDEL
SLC34A1	6569	hgsc.bcm.edu	hg19	5	176824798	176824800	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SLC34A1	NM_003052	exon13	c.1430_1432del	p.477_478del	.	.	118.0	26.0	136.0	0.0	.	73	.	0.220339	0	none	.	.	PASS	Atlas-INDEL
CENPE	1062	hgsc.bcm.edu	hg19	4	104041471	104041471	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	CENPE	NM_001813	exon44	c.7164delT	p.N2388fs	.	.	62.0	18.0	68.0	0.0	.	253	.	0.290323	0	none	.	.	PASS	Atlas-INDEL
LRBA	987	hgsc.bcm.edu	hg19	4	151827133	151827134	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	LRBA	NM_006726	exon13	c.1612_1613insA	p.S538fs	.	.	67.0	27.0	78.0	0.0	.	253	.	0.402985	0	none	.	.	PASS	Atlas-INDEL
SH3TC1	54436	hgsc.bcm.edu	hg19	4	8229750	8229752	+	In_Frame_Del	DEL	ACC	ACC	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	ACC	ACC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SH3TC1	NM_018986	exon12	c.2328_2330del	p.776_777del	.	.	49.0	12.0	43.0	0.0	.	105	.	0.244898	0	none	.	.	PASS	Atlas-INDEL
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144915498	144915498	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PDE4DIP	NM_001002811	exon10	c.2417delT	p.M806fs	.	.	447.0	85.0	452.0	0.0	.	817	.	0.190157	0	none	.	.	PASS	Atlas-INDEL
PROSER1	80209	hgsc.bcm.edu	hg19	13	39587574	39587574	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	.	NM_025138	exon11	c.1816delA	p.M606X	.	.	191.0	72.0	247.0	0.0	.	.	.	0.376963	0	none	.	.	PASS	Atlas-INDEL
DARS	1615	hgsc.bcm.edu	hg19	2	136673870	136673871	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	DARS	NM_001349	exon11	c.1032_1033insT	p.L344fs	.	.	153.0	48.0	149.0	0.0	.	44	.	0.313726	0	none	.	.	PASS	Atlas-INDEL
EFCAB5	374786	hgsc.bcm.edu	hg19	17	28405254	28405255	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	EFCAB5	NM_198529	exon15	c.2759_2760insA	p.P920fs	.	.	88.0	19.0	54.0	0.0	.	122	.	0.215909	0	none	.	.	PASS	Atlas-INDEL
ZNF3	7551	hgsc.bcm.edu	hg19	7	99669265	99669266	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZNF3	NM_032924	exon6	c.842_843insG	p.E281fs	.	.	113.0	28.0	83.0	0.0	.	54	.	0.247788	0	none	.	.	PASS	Atlas-INDEL
