Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PBX1	5087	hgsc.bcm.edu	hg19	1	164761953	164761953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PBX1	NM_001204963	exon3	c.C488T	p.T163M	ACCATACGGAGCT	.	60.0	30.0	72.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
SUSD4	55061	hgsc.bcm.edu	hg19	1	223438095	223438095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SUSD4	NM_017982	exon5	c.C601T	p.P201S	CCACCGGGAAGGA	.	88.0	18.0	102.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233651899	233651899	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GIGYF2	NM_001103147	exon11	c.G638C	p.G213A	CAGTAGGGAGAAA	.	92.0	16.0	78.0	0.0	.	288	.	.	.	none	.	.	PASS	Atlas-SNP
NUP210	23225	hgsc.bcm.edu	hg19	3	13438880	13438880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NUP210	NM_024923	exon3	c.A413G	p.K138R	TGGATCTTCAGCT	.	85.0	25.0	78.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
RBM5	10181	hgsc.bcm.edu	hg19	3	50147868	50147868	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	RBM5	NM_005778	exon16	c.T1335C	p.P445P	TTCCCCTACTGGT	.	149.0	36.0	180.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
GOLIM4	27333	hgsc.bcm.edu	hg19	3	167747034	167747034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GOLIM4	NM_014498	exon11	c.A1490G	p.Q497R	ATTCCCTGGTCCT	.	90.0	6.0	105.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
APBB2	323	hgsc.bcm.edu	hg19	4	40818110	40818110	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	APBB2	NM_004307	exon18	c.A2279T	p.X760L	TGCAGCTATGGCA	.	99.0	22.0	98.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48536646	48536646	+	Silent	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	FRYL	NM_015030	exon49	c.T6621C	p.S2207S	CAATAGACTATAA	.	67.0	10.0	66.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
PDLIM4	8572	hgsc.bcm.edu	hg19	5	131602211	131602211	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PDLIM4	NM_003687	exon3	c.C300T	p.H100H	GGCACACAGGATC	.	235.0	70.0	251.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
SLC22A4	6583	hgsc.bcm.edu	hg19	5	131647952	131647952	+	Silent	SNP	A	A	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SLC22A4	NM_003059	exon2	c.A492C	p.S164S	GCTGTCAGACAGG	.	56.0	18.0	75.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
TIFAB	497189	hgsc.bcm.edu	hg19	5	134785315	134785315	+	Silent	SNP	G	G	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	TIFAB,NS,carcinoma,0,1	TIFAB	NM_001099221	exon2	c.C315G	p.V105V	GAAGGAGACCCTG	.	133.0	24.0	148.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
GABRA6	2559	hgsc.bcm.edu	hg19	5	161116041	161116041	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GABRA6	NM_000811	exon4	c.T312C	p.N104N	TCTGAATAATTTG	.	85.0	17.0	65.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
DTNBP1	84062	hgsc.bcm.edu	hg19	6	15523339	15523339	+	Missense_Mutation	SNP	C	C	G	rs374085686	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DTNBP1	NM_032122	exon10	c.G923C	p.R308P	ATGTCCCGGGTGG	.	197.0	32.0	163.0	0.0	.	56	.	.	.	alt	.	.	PASS	Atlas-SNP
HIST1H3J	8356	hgsc.bcm.edu	hg19	6	27858516	27858516	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HIST1H3J	NM_003535	exon1	c.A55C	p.K19Q	GCTGCTTCCGCGG	.	89.0	25.0	111.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJB9	4189	hgsc.bcm.edu	hg19	7	108212287	108212287	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DNAJB9	NM_012328	exon2	c.G117A	p.E39E	ATCAGAGCGCCAA	.	137.0	43.0	131.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
FAM83H	286077	hgsc.bcm.edu	hg19	8	144809730	144809730	+	Missense_Mutation	SNP	G	G	C	rs367877690		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	FAM83H	NM_198488	exon5	c.C1901G	p.A634G	AAGGCTGCTGGGA	.	12.0	6.0	3.0	0.0	.	68	.	.	.	weak	.	.	PASS	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	hg19	8	145001217	145001217	+	Silent	SNP	C	C	T	rs374669316		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PLEC	NM_201380	exon29	c.G4284A	p.A1428A	AAGCTGCGCCTTG	.	69.0	4.0	64.0	0.0	.	1144	.	.	.	weak	.	.	PASS	Atlas-SNP
CDKN2A	1029	hgsc.bcm.edu	hg19	9	21971184	21971184	+	Missense_Mutation	SNP	T	T	G	rs201208890	bycluster	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	CDKN2A_ENST00000498124,mucosal,malignant_melanoma,-2,3	CDKN2A	NM_058195	exon2	c.A217C	p.S73R	CGCCACTCGGGCG	.	34.0	18.0	4.0	2.0	.	4810	.	.	.	weak	.	.	PASS	Atlas-SNP
GLYATL2	219970	hgsc.bcm.edu	hg19	11	58601915	58601915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GLYATL2	NM_145016	exon6	c.A872G	p.K291R	TATTTCTTGGGGG	.	37.0	11.0	41.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	hg19	11	95825395	95825395	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MAML2	NM_032427	exon2	c.G1800A	p.Q600Q	CTGCTGCTGCTGC	.	137.0	16.0	159.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
CD163L1	283316	hgsc.bcm.edu	hg19	12	7526001	7526001	+	Silent	SNP	C	C	T	rs368002565		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CD163L1	NM_174941	exon14	c.G3645A	p.T1215T	GATATGCGTTTTA	.	280.0	46.0	332.0	0.0	.	238	.	.	.	weak	.	.	PASS	Atlas-SNP
SLC38A4	55089	hgsc.bcm.edu	hg19	12	47170779	47170779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SLC38A4	NM_001143824	exon12	c.G1082A	p.R361Q	TTTCTCCGGGACC	.	64.0	16.0	87.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
XPOT	11260	hgsc.bcm.edu	hg19	12	64808728	64808728	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	XPOT	NM_007235	exon3	c.C102A	p.A34A	AGATGCCTGGCAG	.	37.0	5.0	31.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
METAP2	10988	hgsc.bcm.edu	hg19	12	95907438	95907438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	METAP2	NM_006838	exon11	c.A1195G	p.T399A	CCAAGAACAAAAC	.	88.0	21.0	69.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
KBTBD13	390594	hgsc.bcm.edu	hg19	15	65369367	65369367	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	KBTBD13	NM_001101362	exon1	c.C214T	p.L72L	CCGGCGCTGGCGG	.	7.0	5.0	0.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
CDR2	1039	hgsc.bcm.edu	hg19	16	22358803	22358803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CDR2	NM_001802	exon5	c.T848C	p.F283S	TCTTTGAAAGGAA	.	64.0	15.0	43.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF629	23361	hgsc.bcm.edu	hg19	16	30794425	30794425	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ZNF629	NM_001080417	exon3	c.C1224T	p.G408G	GCTCTTGCCGCAC	.	179.0	51.0	184.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
OSGIN1	29948	hgsc.bcm.edu	hg19	16	83994295	83994295	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	OSGIN1	NM_182981	exon4	c.G326A	p.W109X	TCACCTGGAAGCA	.	185.0	62.0	189.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
MTHFSD	64779	hgsc.bcm.edu	hg19	16	86565821	86565821	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MTHFSD	NM_001159377	exon8	c.C948T	p.D316D	ACGGGCGTCCCCG	.	143.0	25.0	131.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
ACSF2	80221	hgsc.bcm.edu	hg19	17	48541577	48541577	+	Splice_Site	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ACSF2	NM_025149	exon10	c.1139-2A>G	.	TGATTCAGGTGTC	.	129.0	44.0	150.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11134286	11134286	+	Silent	SNP	C	C	G	rs371276213	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SMARCA4	NM_003072	exon20	c.C2952G	p.V984V	GGAAGTCGAGGCC	.	142.0	26.0	141.0	0.0	.	502	.	.	.	alt	.	.	PASS	Atlas-SNP
NCCRP1	342897	hgsc.bcm.edu	hg19	19	39687743	39687743	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NCCRP1	NM_001001414	exon1	c.C121T	p.L41L	CCACCACTGCCCT	.	9.0	5.0	0.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
LILRB1	10859	hgsc.bcm.edu	hg19	19	55143956	55143956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	LILRB1	NM_001081637	exon6	c.A703G	p.I235V	GGTCCTATCGTGG	.	264.0	83.0	333.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
HNF4A	3172	hgsc.bcm.edu	hg19	20	42984469	42984469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HNF4A	NM_001030003	exon1	c.G25T	p.G9W	CCCCTCGGGGCTC	.	75.0	16.0	66.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
GGT5	2687	hgsc.bcm.edu	hg19	22	24628898	24628898	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GGT5	NM_001099781	exon4	c.C489G	p.F163L	GGGCTGGAACAGC	.	193.0	36.0	122.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
SH3KBP1	30011	hgsc.bcm.edu	hg19	X	19560045	19560045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SH3KBP1	NM_031892	exon16	c.G1890T	p.Q630H	TCACTTCTGCTGG	.	81.0	40.0	84.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
TAF1	6872	hgsc.bcm.edu	hg19	X	70618524	70618524	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TAF1	NM_004606	exon24	c.G3783A	p.K1261K	GGAAAAGGAGAAG	.	129.0	74.0	157.0	0.0	.	439	.	.	.	none	.	.	PASS	Atlas-SNP
HIST1H2AL	8332	hgsc.bcm.edu	hg19	6	27833355	27833357	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	HIST1H2AL,lower_third,carcinoma,0,1	HIST1H2AL	NM_003511	exon1	c.222_224del	p.74_75del	.	.	217.0	47.0	216.0	0.0	.	14	.	0.21659	0	none	.	.	PASS	Atlas-Indel,Pindel
RFC5	5985	hgsc.bcm.edu	hg19	12	118462664	118462664	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	RFC5,NS,carcinoma,0,1	RFC5	NM_001206801	exon6	c.429delG	p.E143fs	.	.	53.0	15.0	48.0	0.0	.	35	.	0.283019	0	none	.	.	PASS	Atlas-INDEL
LRRC16B	90668	hgsc.bcm.edu	hg19	14	24528535	24528547	+	Frame_Shift_Del	DEL	CATCAATGCCCTG	CATCAATGCCCTG	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	CATCAATGCCCTG	CATCAATGCCCTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	LRRC16B	NM_138360	exon21	c.1682_1694del	p.561_565del	.	.	154.0	40.0	288.0	0.0	.	120	.	0.25974	0	none	.	.	PASS	Atlas-Indel,Pindel
TCEANC	170082	hgsc.bcm.edu	hg19	X	13680806	13680808	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TCEANC	NM_152634	exon4	c.268_270del	p.90_90del	.	.	58.0	33.0	64.0	0.0	.	29	.	0.568965	0	none	.	.	PASS	Atlas-Indel,Pindel
NEFH	4744	hgsc.bcm.edu	hg19	22	29885571	29885572	+	In_Frame_Ins	INS	-	-	CCCCTGAGAAGGCCAAGT	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NEFH	NM_021076	exon4	c.1942_1943insCCCCTGAGAAGGCCAAGT	p.S648delinsSPEKAKS	.	.	223.0	71.0	173.0	0.0	.	178	.	0.318386	0	none	.	.	PASS	Atlas-INDEL
TMCC3	57458	hgsc.bcm.edu	hg19	12	94975986	94975987	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TMCC3	NM_020698	exon2	c.407_408insT	p.Y136fs	.	.	73.0	12.0	100.0	0.0	.	63	.	0.164384	0	none	.	.	PASS	Atlas-INDEL
SH3KBP1	30011	hgsc.bcm.edu	hg19	X	19560042	19560043	+	Splice_Site	INS	-	-	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SH3KBP1	NM_001184960	exon12	c.1178+1->A	.	.	.	81.0	41.0	81.0	0.0	.	96	.	0.506173	0	none	.	.	PASS	Atlas-INDEL
MLL3	58508	hgsc.bcm.edu	hg19	7	151859497	151859497	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MLL3	NM_170606	exon43	c.11166delG	p.K3722fs	.	.	80.0	23.0	75.0	0.0	.	1564	.	0.2875	0	none	.	.	PASS	Atlas-Indel,Pindel
NEUROD1	4760	hgsc.bcm.edu	hg19	2	182543048	182543051	+	Frame_Shift_Del	DEL	GGTG	GGTG	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GGTG	GGTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NEUROD1	NM_002500	exon2	c.538_541del	p.180_181del	.	.	80.0	22.0	75.0	0.0	.	67	.	0.275	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF225	7768	hgsc.bcm.edu	hg19	19	44636876	44636889	+	Frame_Shift_Del	DEL	AAATGACACATAAC	AAATGACACATAAC	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	AAATGACACATAAC	AAATGACACATAAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ZNF225	NM_013362	exon5	c.2108_2121del	p.703_707del	.	.	91.0	16.0	117.0	0.0	.	41	.	0.176	.	none	.	.	PASS	Pindel
METTL7A	25840	hgsc.bcm.edu	hg19	12	51319010	51319030	+	In_Frame_Del	DEL	GGAGTTTGCGGGCCCCTCCGG	GGAGTTTGCGGGCCCCTCCGG	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GGAGTTTGCGGGCCCCTCCGG	GGAGTTTGCGGGCCCCTCCGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	METTL7A	NM_014033	exon1	c.188_208del	p.63_70del	.	.	80.0	12.0	71.0	0.0	.	19	.	0.150	.	none	.	.	PASS	Pindel
