Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ALPL	249	hgsc.bcm.edu	hg19	1	21889674	21889674	+	Silent	SNP	C	C	A	rs201342272		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ALPL	NM_000478	exon5	c.C369A	p.A123A	GAAGGCCAATGAG	.	179.0	71.0	263.0	0.0	.	50	.	.	.	weak	C|0.999;A|0.001	0.001	PASS	Atlas-SNP
FAM46B	115572	hgsc.bcm.edu	hg19	1	27333078	27333078	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	FAM46B,NS,carcinoma,0,1	FAM46B	NM_052943	exon2	c.T635A	p.F212Y	AATTCAAACTGGC	.	53.0	16.0	96.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
C1orf94	84970	hgsc.bcm.edu	hg19	1	34643683	34643683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	C1orf94	NM_001134734	exon1	c.G293C	p.R98T	CTCTAAGAGGCAA	.	77.0	24.0	133.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
ZCCHC11	23318	hgsc.bcm.edu	hg19	1	52897102	52897102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ZCCHC11	NM_001009881	exon28	c.C4294A	p.Q1432K	ATGGCTGAGGCTG	.	60.0	19.0	88.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
RABIF	5877	hgsc.bcm.edu	hg19	1	202850297	202850297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RABIF	NM_002871	exon2	c.G181A	p.D61N	CGCCGTCAGGATT	.	48.0	18.0	63.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	hg19	1	214826247	214826247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CENPF	NM_016343	exon16	c.T8237C	p.I2746T	TGGAGATAGACCT	.	120.0	25.0	101.0	0.0	.	321	.	.	.	none	.	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228511117	228511117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	OBSCN	NM_001271223	exon67	c.G18333A	p.M6111I	GCCCATGCCCAGT	.	102.0	23.0	112.0	0.0	.	2142	.	.	.	none	.	.	PASS	Atlas-SNP
OR2W3	343171	hgsc.bcm.edu	hg19	1	248059782	248059782	+	Silent	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	OR2W3	NM_001001957	exon1	c.G894A	p.K298K	GGTGAAGGGGGCA	.	80.0	5.0	111.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
LRPPRC	10128	hgsc.bcm.edu	hg19	2	44116985	44116985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	LRPPRC	NM_133259	exon37	c.C4016T	p.A1339V	TACAGTGCTTTAG	.	219.0	48.0	243.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
LRPPRC	10128	hgsc.bcm.edu	hg19	2	44116986	44116986	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	LRPPRC	NM_133259	exon37	c.G4015C	p.A1339P	ACAGTGCTTTAGC	.	217.0	48.0	244.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77671536	77671536	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ROBO2	NM_002942	exon23	c.A3713T	p.D1238V	CACTGGACCAGAC	.	48.0	19.0	70.0	0.0	.	527	.	.	.	none	.	.	PASS	Atlas-SNP
ATP6V1A	523	hgsc.bcm.edu	hg19	3	113505224	113505224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	ATP6V1A,NS,malignant_melanoma,0,1	ATP6V1A	NM_001690	exon6	c.T710C	p.L237P	ATGCCCTTTTTCC	.	88.0	4.0	102.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
AMOTL2	51421	hgsc.bcm.edu	hg19	3	134078995	134078995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	AMOTL2	NM_016201	exon7	c.T1836G	p.N612K	ACCCTCATTGAAG	.	62.0	19.0	78.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A36	55186	hgsc.bcm.edu	hg19	3	140675502	140675502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SLC25A36	NM_018155	exon2	c.G175A	p.V59I	AACCGAGTAGTGT	.	73.0	24.0	85.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	hg19	3	151107816	151107816	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MED12L	NM_053002	exon36	c.T5396G	p.I1799S	CGCCTATCTCCTC	.	88.0	37.0	101.0	0.0	.	271	.	.	.	none	.	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195516343	195516343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MUC4	NM_018406	exon2	c.G2108T	p.G703V	GTGTGACCATCCC	.	84.0	19.0	115.0	0.0	.	1505	.	.	.	none	.	.	PASS	Atlas-SNP
TLR10	81793	hgsc.bcm.edu	hg19	4	38776735	38776735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TLR10	NM_001017388	exon2	c.C477A	p.F159L	TTTCTGGAAATCT	.	43.0	9.0	41.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
SYNPO2	171024	hgsc.bcm.edu	hg19	4	119952865	119952865	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SYNPO2	NM_001128934	exon4	c.T2935A	p.F979I	TTTACTTTCCAAC	.	140.0	28.0	129.0	0.0	.	353	.	.	.	none	.	.	PASS	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183245385	183245385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	NM_001080477	exon1	c.C212A	p.A71E	GAGAAGCAGACGA	.	66.0	9.0	58.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187517964	187517964	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FAT1	NM_005245	exon25	c.G12730C	p.D4244H	GTATGTCTGAGTA	.	97.0	26.0	90.0	0.0	.	500	.	.	.	none	.	.	PASS	Atlas-SNP
TRIP13	9319	hgsc.bcm.edu	hg19	5	908120	908120	+	Silent	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TRIP13	NM_004237	exon8	c.C690T	p.T230T	GGTAACCAAGATG	.	123.0	38.0	96.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
CDH12	1010	hgsc.bcm.edu	hg19	5	21752166	21752166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CDH12	NM_004061	exon15	c.A2065G	p.I689V	TGCGAATTTTGTT	.	221.0	60.0	203.0	0.0	.	238	.	.	.	none	.	.	PASS	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56504731	56504731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DST	NM_001723	exon5	c.G1004A	p.S335N	ACCTCACTGATTT	.	81.0	30.0	98.0	0.0	.	1427	.	.	.	none	.	.	PASS	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	72960096	72960096	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RIMS1	NM_014989	exon13	c.C2305G	p.L769V	ACAGATCTACCTG	.	90.0	14.0	71.0	0.0	.	278	.	.	.	none	.	.	PASS	Atlas-SNP
VGLL2	245806	hgsc.bcm.edu	hg19	6	117591730	117591730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	VGLL2	NM_182645	exon3	c.G416T	p.R139L	GCCAGCGCAGCTT	.	53.0	4.0	72.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
C6orf170	221322	hgsc.bcm.edu	hg19	6	121433801	121433801	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	C6orf170	NM_152730	exon29	c.C3174A	p.C1058X	TTGCAGGCAGACT	.	67.0	4.0	54.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
EGFR	1956	hgsc.bcm.edu	hg19	7	55272975	55272975	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	EGFR	NM_005228	exon28	c.A3298G	p.R1100G	CCCAAAAGGCCCG	.	103.0	5.0	112.0	0.0	.	20426	.	.	.	none	.	.	PASS	Atlas-SNP
MUC12	10071	hgsc.bcm.edu	hg19	7	100646199	100646199	+	Missense_Mutation	SNP	T	T	C	rs4632981		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	MUC12,NS,carcinoma,0,1	MUC12	NM_001164462	exon2	c.T12355C	p.F4119L	ACACACTTTTCTG	.	2.0	2.0	2.0	0.0	.	140	.	.	.	weak	C|1.000;|0.000	1.000	PASS	Atlas-SNP
TMEM67	91147	hgsc.bcm.edu	hg19	8	94805453	94805453	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TMEM67	NM_153704	exon16	c.G1603C	p.A535P	GGGCTAGCTGTTT	.	116.0	31.0	101.0	0.0	.	187	.	.	.	none	.	.	PASS	Atlas-SNP
RECK	8434	hgsc.bcm.edu	hg19	9	36091304	36091304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RECK	NM_021111	exon10	c.G1049T	p.C350F	TGGGCTGTAGAAA	.	100.0	4.0	137.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJC25	548645	hgsc.bcm.edu	hg19	9	114412019	114412019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DNAJC25	NM_001015882	exon3	c.A776G	p.Y259C	GCTCATATATAGT	.	178.0	41.0	138.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
MLLT10	8028	hgsc.bcm.edu	hg19	10	21970293	21970293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MLLT10	NM_001195626	exon11	c.T1654A	p.C552S	GGAGCTTGCCCAA	.	97.0	29.0	88.0	0.0	.	183	.	.	.	none	.	.	PASS	Atlas-SNP
ENKUR	219670	hgsc.bcm.edu	hg19	10	25288439	25288439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	ENKUR,NS,carcinoma,-2,1	ENKUR	NM_145010	exon2	c.C114A	p.D38E	TTGCATGTCATCT	.	86.0	19.0	72.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
HK1	3098	hgsc.bcm.edu	hg19	10	71136714	71136714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	HK1	NM_033498	exon11	c.G912T	p.M304I	TGGCATGTACTTG	.	255.0	59.0	236.0	0.0	.	170	.	.	.	none	.	.	PASS	Atlas-SNP
GBF1	8729	hgsc.bcm.edu	hg19	10	104103846	104103846	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	GBF1	NM_001199378	exon4	c.T202G	p.F68V	CGACCTTTTCTGG	.	116.0	27.0	82.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1093271	1093271	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	MUC2_ENST00000441003,NS,carcinoma,-1,4	MUC2	NM_002457	exon30	c.C5090G	p.T1697R	CCCCAACATCGAC	.	94.0	8.0	82.0	0.0	.	614	.	.	.	none	.	.	PASS	Atlas-SNP
OR52M1	119772	hgsc.bcm.edu	hg19	11	4567069	4567069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	OR52M1	NM_001004137	exon1	c.A649T	p.I217F	GTGGCTATTGCTG	.	144.0	32.0	155.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
RIC3	79608	hgsc.bcm.edu	hg19	11	8132577	8132577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RIC3	NM_001206671	exon6	c.G778A	p.E260K	CTATTTCTTCAGC	.	231.0	47.0	192.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
LRP4	4038	hgsc.bcm.edu	hg19	11	46895104	46895104	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	LRP4	NM_002334	exon29	c.G4270C	p.G1424R	CTCGCCCGATCAC	.	84.0	25.0	78.0	0.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
BRMS1	25855	hgsc.bcm.edu	hg19	11	66108763	66108763	+	Missense_Mutation	SNP	T	T	A	rs199933125	byfrequency;alternate_allele	TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	BRMS1	NM_015399	exon4	c.A272T	p.E91V	ACTTCCTCCAGCC	.	72.0	15.0	80.0	0.0	.	42	.	.	.	alt	T|0.993;C|0.007	.	PASS	Atlas-SNP
TAOK3	51347	hgsc.bcm.edu	hg19	12	118651868	118651868	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TAOK3	NM_016281	exon10	c.T691A	p.Y231N	TGTGATATAAGGC	.	83.0	17.0	58.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
G2E3	55632	hgsc.bcm.edu	hg19	14	31081505	31081505	+	Silent	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	G2E3	NM_017769	exon13	c.G1593A	p.T531T	TATAACGACATTA	.	175.0	40.0	183.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45645152	45645152	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FANCM	NM_020937	exon14	c.C3195G	p.C1065W	AAGTTGCCTTTAT	.	123.0	31.0	87.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP
DLGAP5	9787	hgsc.bcm.edu	hg19	14	55642723	55642723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DLGAP5	NM_014750	exon9	c.G1063T	p.A355S	TTGTTGCTTGAGA	.	73.0	10.0	71.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
AP4E1	23431	hgsc.bcm.edu	hg19	15	51285700	51285700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	AP4E1	NM_007347	exon17	c.G2224T	p.D742Y	AATGTAGATCAAG	.	56.0	8.0	59.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
CHD2	1106	hgsc.bcm.edu	hg19	15	93541851	93541851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CHD2	NM_001271	exon31	c.G4008T	p.E1336D	GGAAGAGGTGAGT	.	74.0	4.0	74.0	0.0	.	280	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC64B	146439	hgsc.bcm.edu	hg19	16	3078701	3078701	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CCDC64B	NM_001103175	exon7	c.A1238T	p.K413M	GCTTACTTGTTCA	.	70.0	16.0	72.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
GTF3C1	2975	hgsc.bcm.edu	hg19	16	27549611	27549611	+	Silent	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	GTF3C1	NM_001520	exon3	c.G498A	p.E166E	ATCCCCCTCCTGG	.	74.0	20.0	79.0	0.0	.	210	.	.	.	none	.	.	PASS	Atlas-SNP
CDH1	999	hgsc.bcm.edu	hg19	16	68853183	68853183	+	Silent	SNP	A	A	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CDH1	NM_004360	exon11	c.A1566C	p.T522T	GTTCAGATATCGG	.	92.0	22.0	116.0	0.0	.	535	.	.	.	none	.	.	PASS	Atlas-SNP
CPNE7	27132	hgsc.bcm.edu	hg19	16	89650107	89650107	+	Silent	SNP	T	T	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CPNE7	NM_014427	exon5	c.T585A	p.I195I	ACAGATTGTGGCC	.	107.0	29.0	120.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
ELP5	23587	hgsc.bcm.edu	hg19	17	7157996	7157996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	NM_203414	exon4	c.T331C	p.C111R	GCCATGTGCAAGA	.	71.0	19.0	62.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ATPAF2	91647	hgsc.bcm.edu	hg19	17	17925092	17925092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ATPAF2	NM_145691	exon6	c.C583T	p.H195Y	CCAGGTGGCTGAC	.	125.0	34.0	126.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
DYM	54808	hgsc.bcm.edu	hg19	18	46798650	46798650	+	Silent	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	DYM,NS,carcinoma,0,1	DYM	NM_017653	exon11	c.G1149C	p.L383L	ATGATACAGAATC	.	123.0	35.0	151.0	1.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
HMHA1	23526	hgsc.bcm.edu	hg19	19	1082889	1082889	+	Silent	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	HMHA1	NM_001258328	exon20	c.G2616T	p.L872L	AGGGCTGGCCAAG	.	49.0	19.0	49.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
MRI1	84245	hgsc.bcm.edu	hg19	19	13883025	13883025	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MRI1	NM_001031727	exon6	c.A1040T	p.E347V	CCCCTGAGGAGCT	.	208.0	48.0	217.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
USHBP1	83878	hgsc.bcm.edu	hg19	19	17366410	17366410	+	Silent	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	USHBP1	NM_031941	exon10	c.C1476T	p.A492A	CGCCAGGGCCTCC	.	79.0	14.0	79.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	hg19	19	36002420	36002420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	DMKN,colon,carcinoma,0,1	DMKN	NM_001126058	exon5	c.G811A	p.G271S	TGCTGCCACCACT	.	26.0	3.0	22.0	2.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
CBLC	23624	hgsc.bcm.edu	hg19	19	45281521	45281521	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CBLC	NM_001130852	exon1	c.C333G	p.F111L	GCTCTTCCGGGCG	.	19.0	5.0	18.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF577	84765	hgsc.bcm.edu	hg19	19	52376955	52376955	+	Silent	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ZNF577	NM_032679	exon7	c.T288C	p.F96F	GATTACAAAACCT	.	59.0	13.0	41.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF606	80095	hgsc.bcm.edu	hg19	19	58489700	58489700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ZNF606	NM_025027	exon7	c.A2348G	p.Q783R	TTTCTCTGGTGTT	.	152.0	39.0	134.0	0.0	.	155	.	.	.	none	.	.	PASS	Atlas-SNP
BPIFB6	128859	hgsc.bcm.edu	hg19	20	31627181	31627181	+	Missense_Mutation	SNP	C	C	A	rs370022331	alternate_allele	TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	NM_174897	exon10	c.C929A	p.P310H	CAAAGCCCTTGAC	.	88.0	33.0	112.0	0.0	.	.	.	.	.	alt	.	.	PASS	Atlas-SNP
TTPAL	79183	hgsc.bcm.edu	hg19	20	43108944	43108944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TTPAL	NM_001039199	exon2	c.A305G	p.Y102C	TCAACTACCACAG	.	153.0	49.0	167.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
ADA	100	hgsc.bcm.edu	hg19	20	43251682	43251682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ADA	NM_000022	exon7	c.C644T	p.A215V	TCCCCGGCGTGGA	.	98.0	20.0	112.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	hg19	20	62201870	62201870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	NM_001037335	exon4	c.C557T	p.A186V	TGGACGGCAAACG	.	81.0	4.0	93.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KCNE2	9992	hgsc.bcm.edu	hg19	21	35743124	35743124	+	Missense_Mutation	SNP	C	C	T	rs199473367		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	KCNE2,colon,carcinoma,0,1	KCNE2	NM_172201	exon2	c.C347T	p.A116V	TTGGTGCGGCTGG	.	99.0	26.0	97.0	0.0	.	13	.	.	.	weak	.	.	PASS	Atlas-SNP
USP9X	8239	hgsc.bcm.edu	hg19	X	41043810	41043810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	USP9X	NM_001039591	exon23	c.C3440T	p.A1147V	GGGGTGCCTACCT	.	143.0	72.0	154.0	0.0	.	385	.	.	.	none	.	.	PASS	Atlas-SNP
UPF3B	65109	hgsc.bcm.edu	hg19	X	118977251	118977251	+	Silent	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	UPF3B	NM_023010	exon5	c.A483G	p.R161R	AAACTTTCTATAT	.	31.0	17.0	23.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
NDC80	10403	hgsc.bcm.edu	hg19	18	2610806	2610806	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	NDC80	NM_006101	exon16	c.1736delG	p.G579fs	.	.	157.0	36.0	151.0	0.0	.	62	.	0.229299	0	none	.	.	PASS	Atlas-Indel,Pindel
LSM1	27257	hgsc.bcm.edu	hg19	8	38027436	38027436	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	LSM1	NM_014462	exon3	c.116delC	p.A39fs	.	.	129.0	33.0	122.0	0.0	.	14	.	0.255814	0	none	.	.	PASS	Atlas-Indel,Pindel
RBM28	55131	hgsc.bcm.edu	hg19	7	127958110	127958111	+	In_Frame_Ins	INS	-	-	GAC	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RBM28	NM_018077	exon15	c.1613_1614insGTC	p.Q538delinsRQ	.	.	88.0	19.0	101.0	0.0	.	71	.	0.215909	0	none	.	.	PASS	Atlas-Indel,Pindel
KCNJ15	3772	hgsc.bcm.edu	hg19	21	39671646	39671649	+	Frame_Shift_Del	DEL	TTGA	TTGA	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	TTGA	TTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	KCNJ15	NM_170736	exon3	c.462_465del	p.154_155del	.	.	105.0	28.0	115.0	0.0	.	43	.	0.266667	0	none	.	.	PASS	Atlas-Indel,Pindel
GPR85	54329	hgsc.bcm.edu	hg19	7	112724144	112724146	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	GPR85,NS,carcinoma,0,1	GPR85	NM_001146265	exon3	c.632_634del	p.211_212del	.	.	63.0	14.0	84.0	0.0	.	49	.	0.222222	0	none	.	.	PASS	Atlas-INDEL
AKD1	221264	hgsc.bcm.edu	hg19	6	109977966	109977966	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	AKD1	NM_001145128	exon8	c.753delT	p.T251fs	.	.	103.0	32.0	96.0	0.0	.	223	.	0.31068	0	none	.	.	PASS	Atlas-Indel,Pindel
C19orf40	91442	hgsc.bcm.edu	hg19	19	33464971	33464972	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	C19orf40	NM_152266	exon4	c.249_250insA	p.N83fs	.	.	170.0	43.0	145.0	0.0	.	21	.	0.252941	0	none	.	.	PASS	Atlas-Indel,Pindel
SPTA1	6708	hgsc.bcm.edu	hg19	1	158639217	158639217	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SPTA1	NM_003126	exon14	c.1815delA	p.A605fs	.	.	73.0	19.0	65.0	0.0	.	720	.	0.260274	0	none	.	.	PASS	Atlas-Indel,Pindel
DOK7	285489	hgsc.bcm.edu	hg19	4	3478120	3478121	+	Frame_Shift_Ins	INS	-	-	GGCTA	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DOK7	NM_001164673	exon4	c.383_384insGGCTA	p.P128fs	.	.	86.0	21.0	91.0	0.0	.	44	.	0.244186	0	none	.	.	PASS	Atlas-Indel,Pindel
SRD5A1	6715	hgsc.bcm.edu	hg19	5	6663046	6663047	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SRD5A1	NM_001047	exon4	c.680_681insT	p.C227fs	.	.	91.0	23.0	92.0	0.0	.	31	.	0.252747	0	none	.	.	PASS	Atlas-Indel,Pindel
EFCAB13	124989	hgsc.bcm.edu	hg19	17	45468874	45468875	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	NM_152347	exon15	c.1654_1655insG	p.C552fs	.	.	342.0	63.0	277.0	0.0	.	.	.	0.184	.	none	.	.	PASS	Pindel
GPR174	84636	hgsc.bcm.edu	hg19	X	78426874	78426874	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	GPR174	NM_032553	exon1	c.369delC	p.P123fs	.	.	144.0	59.0	128.0	0.0	.	79	.	0.410	.	none	.	.	PASS	Pindel
