Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
CHD5	26038	hgsc.bcm.edu	hg19	1	6214783	6214783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	CHD5	NM_015557	exon5	c.G682A	p.V228I	GGCTGACGGCTAG	.	129.0	55.0	95.0	0.0	.	267	.	.	.	none	.	.	PASS	Atlas-SNP
ENO1	2023	hgsc.bcm.edu	hg19	1	8926559	8926559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ENO1	NM_001428	exon7	c.C446A	p.A149E	TTGAACGCCTGGG	.	52.0	20.0	42.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM57	55219	hgsc.bcm.edu	hg19	1	25784936	25784936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	TMEM57	NM_018202	exon6	c.G707A	p.G236D	ATGGAGGTATCCC	.	302.0	111.0	297.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
STMN1	3925	hgsc.bcm.edu	hg19	1	26230144	26230144	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	STMN1	NM_005563	exon3	c.A174T	p.E58D	TCTTTCTTCTGCA	.	61.0	15.0	65.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
UBXN11	91544	hgsc.bcm.edu	hg19	1	26608865	26608865	+	Silent	SNP	A	A	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	UBXN11	NM_183008	exon16	c.T1488C	p.G496G	ACCGGGACCGGGA	.	33.0	24.0	31.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
WASF2	10163	hgsc.bcm.edu	hg19	1	27742557	27742557	+	Silent	SNP	A	A	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	WASF2	NM_006990	exon5	c.T459G	p.P153P	GTATGAAGGGTCT	.	103.0	31.0	88.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRU	10076	hgsc.bcm.edu	hg19	1	29585188	29585188	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	PTPRU	NM_001195001	exon3	c.G377C	p.G126A	ATGGGGGCCCCCT	.	132.0	50.0	121.0	0.0	.	374	.	.	.	none	.	.	PASS	Atlas-SNP
DLGAP3	58512	hgsc.bcm.edu	hg19	1	35370206	35370206	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	DLGAP3	NM_001080418	exon1	c.G779A	p.W260X	CTCCACCAGCCTG	.	93.0	33.0	99.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL20	27252	hgsc.bcm.edu	hg19	1	173754361	173754361	+	Silent	SNP	A	A	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	KLHL20	NM_014458	exon12	c.A1806G	p.T602T	AATGACACATTGT	.	44.0	20.0	51.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
RFWD2	64326	hgsc.bcm.edu	hg19	1	176105635	176105635	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	RFWD2	NM_022457	exon7	c.A880C	p.K294Q	CTCTCTTAATATC	.	191.0	60.0	168.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
WDR64	128025	hgsc.bcm.edu	hg19	1	241823862	241823862	+	Nonsense_Mutation	SNP	C	C	A	rs150170869	bycluster;by1000genomes;alternate_allele	TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	WDR64	NM_144625	exon2	c.C176A	p.S59X	ATGCATCGGTACA	.	241.0	76.0	243.0	0.0	.	234	.	.	.	alt	C|0.997;T|0.003	.	PASS	Atlas-SNP
OR11L1	391189	hgsc.bcm.edu	hg19	1	248004550	248004550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	OR11L1	NM_001001959	exon1	c.C649T	p.P217S	CATAGGGCCCCAG	.	302.0	96.0	304.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
PNPT1	87178	hgsc.bcm.edu	hg19	2	55900032	55900032	+	Missense_Mutation	SNP	G	G	C	rs141543222	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	PNPT1	NM_033109	exon9	c.C862G	p.H288D	ACTTATGAGTATA	.	97.0	39.0	92.0	0.0	.	68	.	.	.	alt	G|0.998;A|0.002	.	PASS	Atlas-SNP
CNNM4	26504	hgsc.bcm.edu	hg19	2	97427711	97427711	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	CNNM4	NM_020184	exon1	c.C975G	p.D325E	CCTGGACTTTTTT	.	174.0	65.0	154.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
MCM6	4175	hgsc.bcm.edu	hg19	2	136614438	136614438	+	Missense_Mutation	SNP	G	G	A	rs202222981	by1000genomes;alternate_allele	TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	MCM6	NM_005915	exon11	c.C1486T	p.R496W	ACGTCCGGGCGTT	.	112.0	32.0	106.0	0.0	.	64	.	.	.	alt	G|1.000;T|0.000	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179604477	179604477	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	TTN	NM_001267550	exon48	c.A13483T	p.I4495F	GCTGAATTCTAGG	.	153.0	56.0	155.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179604480	179604480	+	Silent	SNP	T	T	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	TTN	NM_001267550	exon48	c.A13480C	p.R4494R	GAATTCTAGGACC	.	153.0	57.0	153.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
DIS3L2	129563	hgsc.bcm.edu	hg19	2	233001388	233001388	+	Silent	SNP	C	C	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	DIS3L2	NM_152383	exon8	c.C909T	p.C303C	CATCTGCCGCATT	.	148.0	49.0	138.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
NUP210	23225	hgsc.bcm.edu	hg19	3	13383246	13383246	+	Splice_Site	SNP	A	A	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	NUP210	NM_024923	exon24	c.3228+2T>C	.	CGTCTTACTTCAA	.	47.0	17.0	46.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
COLQ	8292	hgsc.bcm.edu	hg19	3	15531095	15531095	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	COLQ	NM_080539	exon2	c.C156A	p.C52X	CAGCAGGCAGCAT	.	66.0	22.0	48.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41275683	41275683	+	Silent	SNP	T	T	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	CTNNB1	NM_001098209	exon10	c.T1578G	p.P526P	TGCACCTTTGCGT	.	157.0	61.0	123.0	0.0	.	4904	.	.	.	none	.	.	PASS	Atlas-SNP
GPR87	53836	hgsc.bcm.edu	hg19	3	151012726	151012726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	GPR87	NM_023915	exon3	c.G308C	p.G103A	CCAAATCCTGCAT	.	94.0	27.0	84.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	PIK3CA_ENST00000263967,NS,carcinoma,0,2	PIK3CA	NM_006218	exon10	c.G1624A	p.E542K	CTCTCTGAAATCA	.	502.0	193.0	468.0	0.0	.	8460	.	.	.	weak	.	.	PASS	Atlas-SNP
FAM157A	728262	hgsc.bcm.edu	hg19	3	197880164	197880164	+	Silent	SNP	G	G	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	FAM157A	NM_001145248	exon2	c.G243A	p.Q81Q	GCAGCAGCAGCAG	.	310.0	24.0	262.0	0.0	.	4	.	.	.	none	.	.	PASS	Atlas-SNP
PIGG	54872	hgsc.bcm.edu	hg19	4	514958	514958	+	Silent	SNP	A	A	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	PIGG	NM_017733	exon7	c.A1228C	p.R410R	GTTCTCAGGCAGT	.	141.0	54.0	117.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
NSG1	0	hgsc.bcm.edu	hg19	4	4389387	4389387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	.	NM_014392	exon2	c.A31G	p.K11E	GCAGAGAAGGGCA	.	347.0	120.0	243.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KLF3	51274	hgsc.bcm.edu	hg19	4	38690438	38690438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	KLF3	NM_016531	exon3	c.T290C	p.M97T	TGAGCATGCCTTC	.	129.0	46.0	108.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
AMBN	258	hgsc.bcm.edu	hg19	4	71468348	71468348	+	Missense_Mutation	SNP	G	G	T	rs199556863	bycluster	TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	AMBN	NM_016519	exon7	c.G539T	p.G180V	TCCCAGGAGTAGA	.	309.0	16.0	247.0	0.0	.	73	.	.	.	weak	.	.	PASS	Atlas-SNP
TMEM150C	441027	hgsc.bcm.edu	hg19	4	83424056	83424056	+	Silent	SNP	T	T	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	TMEM150C	NM_001080506	exon4	c.A159C	p.P53P	TATATATGGTGCA	.	182.0	65.0	181.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85748064	85748064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	WDFY3	NM_014991	exon10	c.A1027G	p.T343A	ATGTTGTTAGGGA	.	117.0	41.0	92.0	0.0	.	314	.	.	.	none	.	.	PASS	Atlas-SNP
SPRY1	10252	hgsc.bcm.edu	hg19	4	124323105	124323105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	SPRY1	NM_001258039	exon2	c.C359T	p.A120V	GAAGTGCAGCCAG	.	227.0	91.0	195.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
TLR2	7097	hgsc.bcm.edu	hg19	4	154625017	154625017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	TLR2	NM_003264	exon3	c.C958T	p.P320S	CATATTCCAAGGT	.	116.0	42.0	99.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
FNIP2	57600	hgsc.bcm.edu	hg19	4	159816926	159816926	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	FNIP2	NM_020840	exon16	c.C3175G	p.L1059V	GATAGACTACAGG	.	80.0	22.0	73.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0825	285600	hgsc.bcm.edu	hg19	5	93722048	93722048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	KIAA0825	NM_001145678	exon19	c.G3518A	p.R1173Q	AAAGGTCGGATGG	.	167.0	56.0	132.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
CSF1R	1436	hgsc.bcm.edu	hg19	5	149449790	149449790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	CSF1R	NM_005211	exon9	c.C1274T	p.P425L	GGCTGGGGGTACC	.	80.0	33.0	53.0	0.0	.	250	.	.	.	none	.	.	PASS	Atlas-SNP
GABRB2	2561	hgsc.bcm.edu	hg19	5	160763641	160763641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	GABRB2	NM_021911	exon7	c.C677A	p.T226K	AAACCTGTGGAAA	.	105.0	39.0	84.0	0.0	.	161	.	.	.	none	.	.	PASS	Atlas-SNP
RGS14	10636	hgsc.bcm.edu	hg19	5	176799074	176799074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	RGS14	NM_006480	exon15	c.T1699C	p.X567R	GCCCTCTGACAGC	.	58.0	12.0	63.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
DPCR1	135656	hgsc.bcm.edu	hg19	6	30917945	30917945	+	Silent	SNP	G	G	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	DPCR1	NM_080870	exon2	c.G1704A	p.L568L	TCCTTTGGCCAAT	.	113.0	45.0	123.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
CRISP2	7180	hgsc.bcm.edu	hg19	6	49668403	49668403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	CRISP2	NM_001142408	exon5	c.C161T	p.P54L	CTGGCAGGTGGAG	.	112.0	43.0	100.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
MB21D1	115004	hgsc.bcm.edu	hg19	6	74149944	74149944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	MB21D1	NM_138441	exon3	c.A1102C	p.N368H	AACCATTTCCTTC	.	108.0	29.0	108.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
SASH1	23328	hgsc.bcm.edu	hg19	6	148855991	148855991	+	Silent	SNP	C	C	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	SASH1	NM_015278	exon16	c.C2049T	p.H683H	GGAACACAGAGCT	.	103.0	44.0	91.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152473219	152473219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	SYNE1	NM_182961	exon134	c.T24187C	p.Y8063H	GGCGGTACTGCTT	.	71.0	24.0	71.0	0.0	.	3227	.	.	.	none	.	.	PASS	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	hg19	6	157099429	157099429	+	Silent	SNP	G	G	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ARID1B	NM_017519	exon1	c.G366A	p.Q122Q	GCAACAGCAGCAG	.	43.0	8.0	29.0	0.0	.	320	.	.	.	none	.	.	PASS	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	hg19	6	160466824	160466824	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	IGF2R	NM_000876	exon14	c.T1813A	p.C605S	GGCGGTTGCTTTT	.	90.0	24.0	79.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
ITGB8	3696	hgsc.bcm.edu	hg19	7	20418715	20418715	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ITGB8	NM_002214	exon4	c.A430C	p.K144Q	CTGAAGAAATATC	.	109.0	34.0	95.0	0.0	.	159	.	.	.	none	.	.	PASS	Atlas-SNP
HOXA10	3206	hgsc.bcm.edu	hg19	7	27211696	27211696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	HOXA10	NM_018951	exon2	c.A1055G	p.E352G	TCCTTCTCCAGCT	.	154.0	42.0	131.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48317949	48317949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ABCA13	NM_152701	exon18	c.C7158A	p.F2386L	CTTTTTCACAGTG	.	155.0	52.0	141.0	0.0	.	1192	.	.	.	none	.	.	PASS	Atlas-SNP
CLDN3	1365	hgsc.bcm.edu	hg19	7	73184246	73184246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	CLDN3	NM_001306	exon1	c.T134C	p.I45T	TCCCAGATGTTCT	.	138.0	46.0	112.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	hg19	7	88964261	88964261	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ZNF804B	NM_181646	exon4	c.C1965G	p.N655K	ATTCAACTGCAAG	.	233.0	83.0	205.0	0.0	.	322	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF3	7551	hgsc.bcm.edu	hg19	7	99674930	99674930	+	Silent	SNP	G	G	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ZNF3	NM_032924	exon3	c.C51T	p.D17D	ACCACTGTCAAGC	.	130.0	6.0	91.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
ATXN7L1	222255	hgsc.bcm.edu	hg19	7	105516974	105516974	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ATXN7L1	NM_020725	exon1	c.C31G	p.L11V	CCGAGAGACACGG	.	87.0	25.0	88.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151874116	151874116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	MLL3	NM_170606	exon38	c.G8422A	p.D2808N	GTTTATCAGAGAG	.	80.0	23.0	65.0	0.0	.	1564	.	.	.	none	.	.	PASS	Atlas-SNP
TNKS	8658	hgsc.bcm.edu	hg19	8	9564428	9564428	+	Silent	SNP	T	T	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	TNKS	NM_003747	exon8	c.T1377C	p.A459A	TGGCGCTGATCCT	.	105.0	41.0	89.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
DPP7	29952	hgsc.bcm.edu	hg19	9	140009153	140009153	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	DPP7	NM_013379	exon1	c.C13G	p.P5A	CCCAGGGAGCGGA	.	34.0	11.0	34.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
PNPLA7	375775	hgsc.bcm.edu	hg19	9	140354898	140354898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	PNPLA7	NM_001098537	exon35	c.C3976A	p.P1326T	GACTGGGGTGTCG	.	61.0	22.0	51.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
GAD2	2572	hgsc.bcm.edu	hg19	10	26505778	26505778	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	GAD2	NM_000818	exon1	c.G40T	p.E14X	GGGTCGGAAGATG	.	107.0	41.0	80.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
NRP1	8829	hgsc.bcm.edu	hg19	10	33496597	33496597	+	Silent	SNP	A	A	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	NRP1	NM_001244973	exon10	c.T1662C	p.F554F	AGCTGGAAAAGTC	.	103.0	8.0	62.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
BICC1	80114	hgsc.bcm.edu	hg19	10	60549020	60549020	+	Splice_Site	SNP	A	A	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	BICC1	NM_001080512	exon7	c.601-2A>G	.	CATTTTAGGAGCT	.	91.0	40.0	80.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
UBTD1	80019	hgsc.bcm.edu	hg19	10	99330070	99330070	+	Silent	SNP	C	C	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	UBTD1	NM_024954	exon3	c.C474A	p.G158G	CACGGGCAAGGAC	.	76.0	25.0	81.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129909928	129909928	+	Silent	SNP	G	G	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	MKI67	NM_002417	exon11	c.C2241T	p.D747D	CTTAAAGTCCATT	.	90.0	27.0	64.0	0.0	.	363	.	.	.	none	.	.	PASS	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129909929	129909929	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	MKI67	NM_002417	exon11	c.A2240T	p.D747V	TTAAAGTCCATTT	.	94.0	27.0	65.0	0.0	.	363	.	.	.	none	.	.	PASS	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	hg19	11	1020248	1020248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	MUC6	NM_005961	exon29	c.C3650A	p.P1217H	TGCGTGGGCCGTG	.	94.0	32.0	67.0	0.0	.	408	.	.	.	none	.	.	PASS	Atlas-SNP
OR56A3	390083	hgsc.bcm.edu	hg19	11	5969097	5969097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	OR56A3	NM_001003443	exon1	c.G521T	p.G174V	ATTGTGGAAGAAA	.	81.0	25.0	81.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
RRP8	23378	hgsc.bcm.edu	hg19	11	6622765	6622765	+	Silent	SNP	A	A	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	RRP8	NM_015324	exon3	c.T531G	p.P177P	GGGTTTAGGGGAA	.	23.0	4.0	19.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
PRDM11	56981	hgsc.bcm.edu	hg19	11	45203876	45203876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	PRDM11	NM_001256695	exon3	c.A199C	p.S67R	CCCAAAAGCTTCC	.	101.0	35.0	106.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
USP28	57646	hgsc.bcm.edu	hg19	11	113683009	113683009	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	USP28	NM_020886	exon16	c.A1961T	p.Y654F	TTGAAGTAGGGTA	.	118.0	39.0	91.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
ETS1	2113	hgsc.bcm.edu	hg19	11	128354849	128354849	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ETS1	NM_001143820	exon7	c.A731C	p.K244T	TCATACTTGAGGG	.	130.0	62.0	95.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
ANP32D	23519	hgsc.bcm.edu	hg19	12	48866715	48866715	+	Missense_Mutation	SNP	C	C	G	rs147147368	alternate_allele	TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	ANP32D,NS,malignant_melanoma,0,1	ANP32D	NM_012404	exon1	c.C268G	p.L90V	CCAAACCTCATAC	.	122.0	40.0	107.0	1.0	.	15	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
NCKAP1L	3071	hgsc.bcm.edu	hg19	12	54930739	54930739	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	NCKAP1L	NM_005337	exon29	c.A3085T	p.N1029Y	AACAACAATATTC	.	57.0	19.0	78.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
RAB21	23011	hgsc.bcm.edu	hg19	12	72179447	72179447	+	Silent	SNP	T	T	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	RAB21	NM_014999	exon7	c.T672C	p.S224S	TTCTTCTGGATAA	.	159.0	50.0	169.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
RAB21	23011	hgsc.bcm.edu	hg19	12	72179448	72179448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	RAB21	NM_014999	exon7	c.G673A	p.G225R	TCTTCTGGATAAC	.	158.0	49.0	166.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
PAH	5053	hgsc.bcm.edu	hg19	12	103248991	103248991	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	PAH	NM_000277	exon6	c.T629A	p.F210Y	AGTGGAAAAATGT	.	107.0	46.0	108.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
SSH1	54434	hgsc.bcm.edu	hg19	12	109212091	109212091	+	Splice_Site	SNP	T	T	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	SSH1	NM_018984	exon5	c.215-2A>T	.	ATCACCTGTTGGA	.	188.0	84.0	205.0	0.0	.	144	.	.	.	none	.	.	PASS	Atlas-SNP
ERP29	10961	hgsc.bcm.edu	hg19	12	112457648	112457648	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ERP29	NM_006817	exon2	c.A233C	p.E78A	TTGCTGAAAACTC	.	114.0	38.0	74.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
SUDS3	64426	hgsc.bcm.edu	hg19	12	118852238	118852238	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	SUDS3	NM_022491	exon12	c.A987C	p.X329C	TGCTTGACTTTCT	.	35.0	13.0	35.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL1	57626	hgsc.bcm.edu	hg19	13	70371015	70371015	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	KLHL1	NM_020866	exon7	c.G1494C	p.Q498H	ACCAAACTGCAGC	.	146.0	58.0	103.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
PCCA	5095	hgsc.bcm.edu	hg19	13	101077890	101077890	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	PCCA	NM_001178004	exon20	c.G1750C	p.E584Q	CAGGTGGAAGTTG	.	142.0	52.0	141.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
ABHD13	84945	hgsc.bcm.edu	hg19	13	108882094	108882094	+	Silent	SNP	G	G	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ABHD13	NM_032859	exon2	c.G528A	p.V176V	CTACGTGATGACT	.	81.0	27.0	75.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
BTBD6	90135	hgsc.bcm.edu	hg19	14	105716843	105716843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	BTBD6	NM_033271	exon5	c.C1292A	p.T431K	TCTACACGGCCAG	.	78.0	12.0	57.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
VPS18	57617	hgsc.bcm.edu	hg19	15	41191884	41191884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	VPS18	NM_020857	exon4	c.G868A	p.D290N	ATGGGGGATGGTG	.	26.0	17.0	48.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
CEP152	22995	hgsc.bcm.edu	hg19	15	49089695	49089695	+	Silent	SNP	G	G	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	CEP152	NM_014985	exon5	c.C343A	p.R115R	GATGTCGGTCTTC	.	125.0	50.0	139.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63991178	63991178	+	Silent	SNP	A	A	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	HERC1	NM_003922	exon26	c.T4654C	p.L1552L	ATTCCAATTGACT	.	133.0	57.0	141.0	0.0	.	624	.	.	.	none	.	.	PASS	Atlas-SNP
CIB1	10519	hgsc.bcm.edu	hg19	15	90774633	90774633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	CIB1	NM_006384	exon4	c.C302A	p.T101K	GTGGCTGTGTCAC	.	111.0	41.0	103.0	0.0	.	8	.	.	.	none	.	.	PASS	Atlas-SNP
ABCC6	368	hgsc.bcm.edu	hg19	16	16244452	16244452	+	Silent	SNP	G	G	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ABCC6	NM_001171	exon30	c.C4386G	p.S1462S	CATCACGGAGCGC	.	164.0	62.0	104.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
FHOD1	29109	hgsc.bcm.edu	hg19	16	67264360	67264360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	FHOD1	NM_013241	exon19	c.G2908A	p.E970K	GCACTTCACGGGC	.	217.0	32.0	91.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
CENPT	80152	hgsc.bcm.edu	hg19	16	67862427	67862427	+	Silent	SNP	A	A	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	CENPT	NM_025082	exon15	c.T1512C	p.H504H	GCCAGCATGAGCA	.	200.0	36.0	76.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
GEMIN4	50628	hgsc.bcm.edu	hg19	17	649755	649755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	GEMIN4	NM_015721	exon2	c.G1528A	p.G510S	AGAGGCCCTTTCG	.	122.0	34.0	119.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
SCO1	6341	hgsc.bcm.edu	hg19	17	10596136	10596136	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	SCO1	NM_004589	exon3	c.C507G	p.C169W	ATCAGGGCAATGA	.	82.0	30.0	62.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	hg19	17	39305774	39305774	+	Missense_Mutation	SNP	C	C	G	rs137947981	bycluster	TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	KRTAP4-5,NS,carcinoma,0,1	KRTAP4-5	NM_033188	exon1	c.G246C	p.Q82H	GGTGGTCTGGCAG	.	57.0	36.0	34.0	2.0	.	34	.	.	.	weak	.	.	PASS	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	hg19	17	39305775	39305775	+	Missense_Mutation	SNP	T	T	C	rs141265645	bycluster	TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	KRTAP4-5,NS,carcinoma,+1,1	KRTAP4-5	NM_033188	exon1	c.A245G	p.Q82R	GTGGTCTGGCAGC	.	56.0	36.0	34.0	2.0	.	34	.	.	.	weak	.	.	PASS	Atlas-SNP
KRT9	3857	hgsc.bcm.edu	hg19	17	39723874	39723874	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	KRT9	NM_000226	exon7	c.G1523C	p.G508A	CTTCCTCCACCAT	.	116.0	49.0	93.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
NT5C3B	115024	hgsc.bcm.edu	hg19	17	39981892	39981892	+	Silent	SNP	C	C	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	.	NM_052935	exon9	c.G786A	p.E262E	GTAGCGCTCCCGC	.	94.0	43.0	67.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ITGA2B	3674	hgsc.bcm.edu	hg19	17	42457409	42457409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ITGA2B	NM_000419	exon17	c.G1713T	p.K571N	GCTGTGCTTTCCG	.	90.0	37.0	67.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
SCRN2	90507	hgsc.bcm.edu	hg19	17	45916949	45916949	+	Silent	SNP	C	C	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	SCRN2	NM_138355	exon4	c.G417T	p.L139L	GTGCTCCAGTAAC	.	117.0	33.0	101.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
KAT7	11143	hgsc.bcm.edu	hg19	17	47888871	47888871	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	.	NM_007067	exon7	c.A787C	p.K263Q	AAGGAAAAAGTGG	.	515.0	225.0	480.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ST8SIA5	29906	hgsc.bcm.edu	hg19	18	44260388	44260388	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ST8SIA5	NM_013305	exon7	c.T748G	p.Y250D	TGTTGTAGAAGGC	.	96.0	51.0	65.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF844	284391	hgsc.bcm.edu	hg19	19	12187708	12187708	+	Silent	SNP	G	G	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ZNF844	NM_001136501	exon4	c.G1773C	p.V591V	GAGTGTGACAAAG	.	155.0	55.0	137.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
PARD6B	84612	hgsc.bcm.edu	hg19	20	49354467	49354467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	PARD6B	NM_032521	exon2	c.T140C	p.L47P	GATTACTACAACA	.	173.0	52.0	165.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
DIP2A	23181	hgsc.bcm.edu	hg19	21	47986481	47986481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	DIP2A	NM_015151	exon37	c.G4348T	p.D1450Y	CGGCACGATGCAC	.	93.0	4.0	68.0	0.0	.	332	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D22A	25771	hgsc.bcm.edu	hg19	22	47433038	47433038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	TBC1D22A	NM_014346	exon11	c.C1273A	p.L425M	AACAACCTGCTGA	.	88.0	26.0	64.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
PHF16	9767	hgsc.bcm.edu	hg19	X	46898381	46898381	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	PHF16	NM_001077445	exon8	c.C886G	p.P296A	ATGGAACCGATCA	.	68.0	46.0	66.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
UBL4A	8266	hgsc.bcm.edu	hg19	X	153713966	153713966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	UBL4A	NM_014235	exon4	c.G386A	p.R129H	GTCAGGCGACTCA	.	65.0	43.0	45.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF5	7984	hgsc.bcm.edu	hg19	7	144062673	144062673	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ARHGEF5	NM_005435	exon2	c.2910delG	p.R970fs	.	.	195.0	26.0	180.0	0.0	.	73	.	0.133333	0	none	.	.	PASS	Atlas-Indel,Pindel
WAC	51322	hgsc.bcm.edu	hg19	10	28908467	28908468	+	Frame_Shift_Ins	INS	-	-	TACT	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	WAC	NM_016628	exon14	c.1876_1877insTACT	p.I626fs	.	.	244.0	62.0	232.0	0.0	.	77	.	0.254098	0	none	.	.	PASS	Atlas-Indel,Pindel
SCAF11	9169	hgsc.bcm.edu	hg19	12	46322508	46322509	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	SCAF11	NM_004719	exon11	c.976_977insT	p.N326_T327delinsX	.	.	80.0	28.0	56.0	0.0	.	145	.	0.35	0	none	.	.	PASS	Atlas-Indel,Pindel
PTPN14	5784	hgsc.bcm.edu	hg19	1	214568286	214568292	+	Frame_Shift_Del	DEL	GAATGGT	GAATGGT	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	GAATGGT	GAATGGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	PTPN14	NM_005401	exon9	c.797_803del	p.266_268del	.	.	62.0	15.0	66.0	0.0	.	168	.	0.241935	0	none	.	.	PASS	Atlas-INDEL
B4GALT1	2683	hgsc.bcm.edu	hg19	9	33167143	33167148	+	In_Frame_Del	DEL	TCAGGA	TCAGGA	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	TCAGGA	TCAGGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	B4GALT1	NM_001497	exon1	c.21_26del	p.7_9del	.	.	76.0	20.0	66.0	0.0	.	28	.	0.263158	0	none	.	.	PASS	Atlas-INDEL
FKBP5	2289	hgsc.bcm.edu	hg19	6	35604801	35604826	+	Frame_Shift_Del	DEL	ACTAAAGACAAATGGTTCATTTCTAT	ACTAAAGACAAATGGTTCATTTCTAT	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	ACTAAAGACAAATGGTTCATTTCTAT	ACTAAAGACAAATGGTTCATTTCTAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	FKBP5	NM_001145775	exon4	c.216_241del	p.72_81del	.	.	59.0	10.0	77.0	0.0	.	64	.	0.169492	0	none	.	.	PASS	Atlas-Indel,Pindel
SYTL2	54843	hgsc.bcm.edu	hg19	11	85416053	85416053	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	SYTL2_ENST00000316356,colon,carcinoma,0,2	SYTL2	NM_206927	exon9	c.3137delT	p.I1046fs	.	.	103.0	36.0	96.0	0.0	.	231	.	0.349515	0	none	.	.	PASS	Atlas-Indel,Pindel
CDH1	999	hgsc.bcm.edu	hg19	16	68867229	68867229	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	CDH1	NM_004360	exon16	c.2475delG	p.P825fs	.	.	161.0	44.0	59.0	0.0	.	535	.	0.273292	0	none	.	.	PASS	Atlas-Indel,Pindel
IARS2	55699	hgsc.bcm.edu	hg19	1	220316411	220316411	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	IARS2	NM_018060	exon21	c.2685delC	p.G895fs	.	.	146.0	40.0	106.0	0.0	.	106	.	0.273973	0	none	.	.	PASS	Atlas-Indel,Pindel
SCN8A	6334	hgsc.bcm.edu	hg19	12	52201156	52201161	+	In_Frame_Del	DEL	GGAAGG	GGAAGG	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	GGAAGG	GGAAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	SCN8A	NM_014191	exon27	c.5885_5890del	p.1962_1964del	.	.	349.0	104.0	343.0	0.0	.	331	.	0.297994	0	none	.	.	PASS	Atlas-Indel,Pindel
CHRNA4	1137	hgsc.bcm.edu	hg19	20	61981808	61981808	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	CHRNA4	NM_000744	exon5	c.956delT	p.L319fs	.	.	136.0	49.0	117.0	0.0	.	98	.	0.360294	0	none	.	.	PASS	Atlas-Indel,Pindel
CUL3	8452	hgsc.bcm.edu	hg19	2	225360561	225360561	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	CUL3	NM_001257198	exon13	c.1849delT	p.Y617fs	.	.	109.0	43.0	118.0	0.0	.	96	.	0.394495	0	none	.	.	PASS	Atlas-Indel,Pindel
B4GALT1	2683	hgsc.bcm.edu	hg19	9	33167151	33167151	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	B4GALT1	NM_001497	exon1	c.18delG	p.P6fs	.	.	77.0	20.0	71.0	0.0	.	28	.	0.25974	0	none	.	.	PASS	Atlas-INDEL
B4GALNT2	124872	hgsc.bcm.edu	hg19	17	47219412	47219413	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	B4GALNT2	NM_153446	exon3	c.410_411del	p.137_137del	.	.	96.0	31.0	104.0	0.0	.	67	.	0.322917	0	none	.	.	PASS	Atlas-Indel,Pindel
ILVBL	10994	hgsc.bcm.edu	hg19	19	15230250	15230250	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	ILVBL	NM_006844	exon8	c.894delA	p.P298fs	.	.	228.0	79.0	201.0	0.0	.	54	.	0.346491	0	none	.	.	PASS	Atlas-Indel,Pindel
SHPRH	257218	hgsc.bcm.edu	hg19	6	146215295	146215296	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	SHPRH	NM_173082	exon27	c.4698_4699insA	p.K1566fs	.	.	86.0	33.0	81.0	0.0	.	169	.	0.383721	0	none	.	.	PASS	Atlas-Indel,Pindel
NCKAP1L	3071	hgsc.bcm.edu	hg19	12	54930731	54930733	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	ACA	ACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	NCKAP1L	NM_005337	exon29	c.3076_3078del	p.1026_1026del	.	.	47.0	17.0	66.0	0.0	.	180	.	0.361702	0	none	.	.	PASS	Atlas-Indel,Pindel
POTEH	23784	hgsc.bcm.edu	hg19	22	16258291	16258294	+	Frame_Shift_Del	DEL	ATTT	ATTT	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	ATTT	ATTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	POTEH	NM_001136213	exon10	c.1531_1534del	p.511_512del	.	.	886.0	61.0	783.0	0.0	.	114	.	0.069	.	none	.	.	PASS	Pindel
B4GALT1	2683	hgsc.bcm.edu	hg19	9	33167143	33167151	+	In_Frame_Del	DEL	TCAGGAGCG	TCAGGAGCG	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	TCAGGAGCG	TCAGGAGCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	B4GALT1	NM_001497	exon1	c.18_26del	p.6_9del	.	.	80.0	17.0	70.0	0.0	.	28	.	0.213	.	none	.	.	PASS	Pindel
NAA15	80155	hgsc.bcm.edu	hg19	4	140291525	140291525	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	NAA15	NM_057175	exon15	c.1913delC	p.P638fs	.	.	673.0	113.0	577.0	0.0	.	88	.	0.168	.	none	.	.	PASS	Pindel
UGT3A2	167127	hgsc.bcm.edu	hg19	5	36049438	36049439	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-B9-A8YI-01A-21D-A36X-10	TCGA-B9-A8YI-10A-01D-A370-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b4b55b-1ee7-4b50-838e-95aa7d2fcd51	7aa75db8-fcf8-49cb-b097-27dc79933907	.	UGT3A2	NM_174914	exon4	c.396_397del	p.132_133del	.	.	159.0	44.0	134.0	0.0	.	117	.	0.277	.	none	.	.	PASS	Pindel
