Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MACF1	23499	hgsc.bcm.edu	hg19	1	39775962	39775962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MACF1	NM_012090	exon26	c.C2977A	p.L993I	AAGAACCTTCAGG	.	53.0	12.0	52.0	0.0	.	909	.	.	.	none	.	.	PASS	Atlas-SNP
HIVEP3	59269	hgsc.bcm.edu	hg19	1	41976755	41976755	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	HIVEP3	NM_024503	exon9	c.C6588G	p.P2196P	ACCGATGGGAATC	.	122.0	22.0	149.0	0.0	.	235	.	.	.	none	.	.	PASS	Atlas-SNP
NTNG1	22854	hgsc.bcm.edu	hg19	1	107937850	107937850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	NTNG1	NM_014917	exon4	c.C962A	p.T321N	ACAACACTACAGG	.	199.0	35.0	203.0	0.0	.	274	.	.	.	none	.	.	PASS	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	hg19	1	117131439	117131439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	IGSF3	NM_001542	exon9	c.G2377A	p.E793K	TGACCTCGGCTCT	.	56.0	12.0	35.0	0.0	.	294	.	.	.	none	.	.	PASS	Atlas-SNP
SELL	6402	hgsc.bcm.edu	hg19	1	169677647	169677647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SELL	NM_000655	exon3	c.G422A	p.C141Y	TCCACGCAGTCCT	.	86.0	23.0	76.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
CAD	790	hgsc.bcm.edu	hg19	2	27459639	27459639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CAD	NM_004341	exon27	c.C4337A	p.A1446D	GGCCAGCCCCTCC	.	189.0	42.0	183.0	0.0	.	199	.	.	.	none	.	.	PASS	Atlas-SNP
VWA3B	200403	hgsc.bcm.edu	hg19	2	98744846	98744846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	VWA3B,NS,carcinoma,0,1	VWA3B	NM_144992	exon6	c.G847T	p.D283Y	CTAAAGGATCTGA	.	74.0	15.0	78.0	1.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52398951	52398951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	DNAH1	NM_015512	exon34	c.A5434G	p.I1812V	CCCACCATCAAGG	.	100.0	30.0	93.0	0.0	.	534	.	.	.	none	.	.	PASS	Atlas-SNP
NFXL1	152518	hgsc.bcm.edu	hg19	4	47901107	47901107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	NFXL1	NM_152995	exon7	c.C857T	p.T286I	GTAGTTGTGACCA	.	54.0	10.0	55.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A4	8671	hgsc.bcm.edu	hg19	4	72429512	72429512	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	SLC4A4,NS,carcinoma,+2,1	SLC4A4	NM_001098484	exon24	c.T3102A	p.S1034S	ACAGTCTGACTGC	.	195.0	35.0	199.0	0.0	.	269	.	.	.	none	.	.	PASS	Atlas-SNP
SLC26A8	116369	hgsc.bcm.edu	hg19	6	35949921	35949921	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SLC26A8	NM_052961	exon8	c.G1002A	p.T334T	AATAAGCGTCTGG	.	125.0	19.0	146.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
RBAK	57786	hgsc.bcm.edu	hg19	7	5104736	5104736	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RBAK	NM_001204456	exon6	c.A1649T	p.E550V	TCAATGAGTTGTC	.	107.0	35.0	94.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
SP4	6671	hgsc.bcm.edu	hg19	7	21468915	21468915	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SP4	NM_003112	exon3	c.G132A	p.Q44Q	CTCTCAGCCCTCT	.	71.0	9.0	60.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC132	55610	hgsc.bcm.edu	hg19	7	92932848	92932848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CCDC132	NM_017667	exon17	c.A1438G	p.I480V	TTCAGCATCTTGC	.	254.0	48.0	210.0	0.0	.	136	.	.	.	none	.	.	PASS	Atlas-SNP
RGP1	9827	hgsc.bcm.edu	hg19	9	35751270	35751270	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RGP1	NM_001080496	exon6	c.G495A	p.Q165Q	CCTTCAGGATGTC	.	410.0	87.0	404.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
NUP214	8021	hgsc.bcm.edu	hg19	9	134020018	134020018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	NUP214	NM_005085	exon12	c.G1646T	p.G549V	CCTTTGGATCATC	.	107.0	24.0	125.0	0.0	.	166	.	.	.	none	.	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	16918967	16918967	+	Missense_Mutation	SNP	G	G	A	rs143741363		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CUBN	NM_001081	exon57	c.C9035T	p.P3012L	AGAACCGGCCCAG	.	119.0	18.0	113.0	0.0	.	515	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
ACADSB	36	hgsc.bcm.edu	hg19	10	124793900	124793900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ACADSB	NM_001609	exon2	c.C71T	p.S24F	GTTTGTCTTCTTG	.	168.0	37.0	118.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
OR8J3	81168	hgsc.bcm.edu	hg19	11	55904466	55904466	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	OR8J3,NS,carcinoma,0,3	OR8J3	NM_001004064	exon1	c.G729A	p.S243S	CATATGCGAAGCG	.	117.0	25.0	119.0	1.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
DPAGT1	1798	hgsc.bcm.edu	hg19	11	118971040	118971040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	DPAGT1	NM_001382	exon4	c.G575A	p.G192D	TCTAGGCCGTTAA	.	166.0	28.0	153.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
DGKA	1606	hgsc.bcm.edu	hg19	12	56346149	56346149	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	DGKA	NM_201554	exon20	c.C1677G	p.F559L	GTACTTCGAATTT	.	172.0	57.0	133.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
RDH11	51109	hgsc.bcm.edu	hg19	14	68157017	68157017	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RDH11	NM_016026	exon5	c.C576T	p.G192G	TTTCTCGCCCTGC	.	90.0	26.0	110.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
RFX7	64864	hgsc.bcm.edu	hg19	15	56387238	56387238	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RFX7	NM_022841	exon9	c.G2688C	p.Q896H	CATTTGCTGCTCC	.	81.0	15.0	57.0	0.0	.	170	.	.	.	none	.	.	PASS	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80041413	80041413	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	FASN	NM_004104	exon31	c.T5321G	p.L1774R	TGAGAAAGGTCGA	.	100.0	11.0	60.0	0.0	.	154	.	.	.	none	.	.	PASS	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	7025998	7025998	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	LAMA1	NM_005559	exon17	c.T2382C	p.P794P	GGTGAGAGGGCAG	.	21.0	4.0	23.0	0.0	.	458	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF236	7776	hgsc.bcm.edu	hg19	18	74622686	74622686	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ZNF236	NM_007345	exon16	c.C2718T	p.S906S	TTCCAGCACACTT	.	132.0	29.0	97.0	0.0	.	325	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF266	10781	hgsc.bcm.edu	hg19	19	9524367	9524367	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ZNF266	NM_001271314	exon11	c.A1234C	p.K412Q	CACATTTGACACA	.	75.0	22.0	73.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF561	93134	hgsc.bcm.edu	hg19	19	9721627	9721627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ZNF561	NM_152289	exon6	c.C710T	p.S237F	TGTGAAGAAGCTG	.	113.0	24.0	117.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
MYO9B	4650	hgsc.bcm.edu	hg19	19	17311587	17311587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MYO9B	NM_001130065	exon26	c.G4512T	p.Q1504H	CCGCCAGATCACC	.	96.0	25.0	86.0	0.0	.	264	.	.	.	none	.	.	PASS	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	hg19	21	43505425	43505425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	UMODL1	NM_173568	exon4	c.C506T	p.S169F	TGGGCTCCTGGTA	.	181.0	34.0	147.0	0.0	.	186	.	.	.	none	.	.	PASS	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26400727	26400727	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MYO18B	NM_032608	exon42	c.C6376T	p.Q2126X	AGCCTGCAGTCCT	.	102.0	13.0	87.0	0.0	.	322	.	.	.	none	.	.	PASS	Atlas-SNP
MKL1	57591	hgsc.bcm.edu	hg19	22	40814880	40814880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MKL1	NM_020831	exon12	c.G1562A	p.R521H	TTGTCGCGCCCCT	.	98.0	21.0	100.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
MAOB	4129	hgsc.bcm.edu	hg19	X	43702915	43702915	+	Splice_Site	SNP	C	C	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MAOB	NM_000898	exon3	c.141+1G>C	.	GCCTTACCCTAAG	.	30.0	14.0	30.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
SMC1A	8243	hgsc.bcm.edu	hg19	X	53407985	53407985	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SMC1A	NM_006306	exon23	c.T3461A	p.V1154D	TCCAGGACGAAGA	.	67.0	27.0	78.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
ACAA1	30	hgsc.bcm.edu	hg19	3	38167081	38167092	+	In_Frame_Del	DEL	TGAGCAGCGTGA	TGAGCAGCGTGA	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	TGAGCAGCGTGA	TGAGCAGCGTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	ACAA1,NS,carcinoma,0,1	ACAA1	NM_001607	exon11	c.1164_1175del	p.388_392del	.	.	94.0	13.0	96.0	0.0	.	32	.	0.138298	0	none	.	.	PASS	Atlas-INDEL
STAG3	10734	hgsc.bcm.edu	hg19	7	99779767	99779767	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	STAG3	NM_012447	exon3	c.170delA	p.N57fs	.	.	71.0	10.0	76.0	0.0	.	121	.	0.140845	0	none	.	.	PASS	Atlas-INDEL
LGR4	55366	hgsc.bcm.edu	hg19	11	27390335	27390336	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	LGR4	NM_018490	exon18	c.1935_1936insT	p.L645fs	.	.	112.0	21.0	102.0	0.0	.	87	.	0.1875	0	none	.	.	PASS	Atlas-INDEL
PRB4	5545	hgsc.bcm.edu	hg19	12	11461597	11461597	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PRB4	NM_002723	exon3	c.321delA	p.G107fs	.	.	789.0	116.0	633.0	0.0	.	59	.	0.147022	0	none	.	.	PASS	Atlas-INDEL
GBE1	2632	hgsc.bcm.edu	hg19	3	81698998	81698998	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	GBE1	NM_000158	exon4	c.505delG	p.D169fs	.	.	60.0	11.0	63.0	0.0	.	111	.	0.183333	0	none	.	.	PASS	Atlas-INDEL
PSD2	84249	hgsc.bcm.edu	hg19	5	139193812	139193812	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PSD2	NM_032289	exon4	c.878delA	p.E293fs	.	.	170.0	27.0	122.0	0.0	.	88	.	0.158824	0	none	.	.	PASS	Atlas-INDEL
MLL2	8085	hgsc.bcm.edu	hg19	12	49443557	49443558	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MLL2	NM_003482	exon11	c.3814_3815del	p.1272_1272del	.	.	158.0	24.0	116.0	0.0	.	1173	.	0.151899	0	none	.	.	PASS	Atlas-INDEL
