Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ZBTB8OS	339487	hgsc.bcm.edu	hg19	1	33099257	33099257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ZBTB8OS	NM_178547	exon4	c.T352G	p.F118V	GTATGAAGAATTC	.	70.0	40.0	104.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
RLF	6018	hgsc.bcm.edu	hg19	1	40701983	40701983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RLF	NM_012421	exon8	c.G1609A	p.D537N	AAAAGAGACAAAA	.	101.0	34.0	147.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM53	79639	hgsc.bcm.edu	hg19	1	45120714	45120714	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TMEM53	NM_024587	exon3	c.C351A	p.V117V	CAGCATGACGCCA	.	46.0	26.0	82.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
DAP3	7818	hgsc.bcm.edu	hg19	1	155695186	155695186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	DAP3	NM_033657	exon5	c.G284A	p.S95N	CATTCAGTGAAGC	.	182.0	66.0	165.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
TIPRL	261726	hgsc.bcm.edu	hg19	1	168168189	168168189	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TIPRL	NM_152902	exon6	c.G645A	p.T215T	ATATACGTCACGA	.	51.0	11.0	40.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
RFWD2	64326	hgsc.bcm.edu	hg19	1	175914297	175914297	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RFWD2	NM_022457	exon20	c.T2188C	p.L730L	ATACCAATTCTAG	.	77.0	4.0	52.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
KLHDC8A	55220	hgsc.bcm.edu	hg19	1	205312513	205312513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	KLHDC8A	NM_018203	exon2	c.G220A	p.V74I	CGGTGACGGCCAC	.	174.0	52.0	172.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
HEATR5B	54497	hgsc.bcm.edu	hg19	2	37267620	37267620	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	HEATR5B	NM_019024	exon20	c.T2898A	p.S966R	CGGACCACTAGAA	.	125.0	38.0	120.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
UGGT1	56886	hgsc.bcm.edu	hg19	2	128918714	128918714	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	UGGT1	NM_020120	exon25	c.C2697A	p.I899I	ACAGATCATTGGG	.	139.0	45.0	135.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
MGAT5	4249	hgsc.bcm.edu	hg19	2	135206357	135206357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MGAT5	NM_002410	exon16	c.G2165A	p.R722K	ACCAGAGGGTCTG	.	113.0	36.0	100.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	hg19	2	153471511	153471511	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	FMNL2	NM_052905	exon12	c.T1209A	p.S403S	CATTTCTCATGTA	.	106.0	38.0	61.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
GPD2	2820	hgsc.bcm.edu	hg19	2	157367411	157367411	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	GPD2	NM_001083112	exon4	c.C378T	p.I126I	GGCCATCATGAAG	.	277.0	76.0	256.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179575504	179575504	+	Silent	SNP	G	G	A	rs375083775		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	TTN_ENST00000356127,rectum,carcinoma,0,1	TTN	NM_001267550	exon98	c.C28320T	p.G9440G	CTTTCCGCCACTT	.	182.0	52.0	144.0	2.0	.	18412	.	.	.	weak	.	.	PASS	Atlas-SNP
ACADL	33	hgsc.bcm.edu	hg19	2	211081192	211081192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ACADL	NM_001608	exon4	c.G415A	p.G139S	CAATACCTGAATG	.	112.0	44.0	105.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
DGKD	8527	hgsc.bcm.edu	hg19	2	234363455	234363455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	DGKD	NM_152879	exon19	c.G2311T	p.G771C	GGCATTGGCCTGG	.	148.0	41.0	124.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	hg19	3	42793447	42793447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CCDC13	NM_144719	exon5	c.A584C	p.Q195P	CCCATCTGGGCCC	.	94.0	33.0	135.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	hg19	3	52544437	52544437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	STAB1,colon,carcinoma,0,1	STAB1	NM_015136	exon25	c.G2701A	p.V901I	GGCCGCGTCTGTG	.	70.0	37.0	119.0	0.0	.	178	.	.	.	none	.	.	PASS	Atlas-SNP
EPHB1	2047	hgsc.bcm.edu	hg19	3	134670526	134670526	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	EPHB1	NM_004441	exon3	c.T437A	p.F146Y	AGAGCTTCTCCCA	.	222.0	112.0	273.0	0.0	.	519	.	.	.	none	.	.	PASS	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	hg19	3	151078359	151078359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MED12L	NM_053002	exon19	c.A2818G	p.S940G	TCATGTAGCCACC	.	239.0	125.0	280.0	0.0	.	271	.	.	.	none	.	.	PASS	Atlas-SNP
NAF1	92345	hgsc.bcm.edu	hg19	4	164050121	164050121	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	NAF1	NM_138386	exon8	c.C1413T	p.P471P	GGGAGGGGGTGGG	.	22.0	16.0	26.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
TERT	7015	hgsc.bcm.edu	hg19	5	1255515	1255515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TERT	NM_198253	exon14	c.G3044T	p.C1015F	AGCACACATGCGT	.	51.0	14.0	49.0	0.0	.	2594	.	.	.	none	.	.	PASS	Atlas-SNP
CCNI2	645121	hgsc.bcm.edu	hg19	5	132084160	132084160	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CCNI2	NM_001039780	exon2	c.C551A	p.S184X	TGATTTCAGTGAA	.	163.0	47.0	122.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
OR5V1	81696	hgsc.bcm.edu	hg19	6	29323498	29323498	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	OR5V1	NM_030876	exon1	c.C475G	p.H159D	CTGTATGCACCAC	.	67.0	37.0	104.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	73108662	73108662	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RIMS1	NM_014989	exon33	c.T4726G	p.Y1576D	GCTCCATATGTCA	.	39.0	15.0	57.0	0.0	.	278	.	.	.	none	.	.	PASS	Atlas-SNP
ANLN	54443	hgsc.bcm.edu	hg19	7	36445953	36445953	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ANLN	NM_018685	exon4	c.T651C	p.N217N	TGTAAATCACTCA	.	143.0	48.0	138.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100681165	100681165	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MUC17	NM_001040105	exon3	c.T6468C	p.Y2156Y	AACTTATAGTGAC	.	383.0	130.0	335.0	0.0	.	804	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116340025	116340025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MET	NM_000245	exon2	c.T887C	p.L296P	TGCCTCTGGAGTG	.	199.0	57.0	191.0	0.0	.	412	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121651531	121651531	+	Silent	SNP	C	C	T	rs143422308	alternate_allele	TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	PTPRZ1	NM_002851	exon12	c.C2431T	p.L811L	TCCATCCTGTCTT	.	398.0	114.0	344.0	0.0	.	605	.	.	.	alt	C|1.000;G|0.000	.	PASS	Atlas-SNP
WRN	7486	hgsc.bcm.edu	hg19	8	30938567	30938567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	WRN	NM_000553	exon9	c.G1024A	p.V342I	ATTCACGTTGAAG	.	142.0	31.0	114.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
EMC2	9694	hgsc.bcm.edu	hg19	8	109489022	109489022	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	.	NM_014673	exon9	c.C603T	p.T201T	GTATACCCAAGGT	.	85.0	27.0	67.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
FAM49B	51571	hgsc.bcm.edu	hg19	8	130883632	130883632	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	FAM49B,colon,carcinoma,0,1	FAM49B	NM_016623	exon4	c.G184T	p.E62X	GTATTTCGTGGCC	.	153.0	56.0	122.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
PHF20L1	51105	hgsc.bcm.edu	hg19	8	133816926	133816926	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	PHF20L1	NM_016018	exon8	c.G788C	p.R263T	ACAAGAGGAAAAA	.	164.0	48.0	128.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO10	26267	hgsc.bcm.edu	hg19	9	37537307	37537307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	FBXO10	NM_012166	exon3	c.C1219A	p.L407M	AGTTCAGCACTAG	.	32.0	11.0	24.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24508666	24508666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	KIAA1217	NM_019590	exon2	c.G182T	p.R61L	CTTCCCGCAATAT	.	106.0	25.0	81.0	0.0	.	235	.	.	.	none	.	.	PASS	Atlas-SNP
EPC1	80314	hgsc.bcm.edu	hg19	10	32580239	32580239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	EPC1	NM_025209	exon6	c.G827C	p.G276A	TAGTCGCCCAAAT	.	176.0	31.0	102.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
OSBPL5	114879	hgsc.bcm.edu	hg19	11	3141834	3141834	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	OSBPL5	NM_020896	exon6	c.C423G	p.S141R	GGTCCAGCTCTTC	.	64.0	36.0	94.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
OR8H3	390152	hgsc.bcm.edu	hg19	11	55890629	55890629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	OR8H3	NM_001005201	exon1	c.A781G	p.K261E	TACTTAAAGCCAA	.	121.0	58.0	168.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
CADM1	23705	hgsc.bcm.edu	hg19	11	115080343	115080343	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	CADM1,NS,carcinoma,0,6	CADM1	NM_014333	exon8	c.C1029A	p.T343T	GGTGGTGGTTGTT	.	48.0	4.0	43.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
IFLTD1	160492	hgsc.bcm.edu	hg19	12	25702289	25702289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	IFLTD1	NM_001145728	exon3	c.G281T	p.G94V	CAGCTACCTACAG	.	70.0	19.0	78.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
ALG10B	144245	hgsc.bcm.edu	hg19	12	38714192	38714192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ALG10B	NM_001013620	exon3	c.T599C	p.V200A	GGAATGTCATTGC	.	442.0	140.0	418.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49427714	49427714	+	Missense_Mutation	SNP	T	T	C	rs372758101		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MLL2	NM_003482	exon39	c.A10774G	p.M3592V	CTGCCATGAGATT	.	9.0	5.0	0.0	0.0	.	1173	.	.	.	weak	.	.	PASS	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120582190	120582190	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	GCN1L1	NM_006836	exon42	c.C5415A	p.I1805I	CATGGAGATAACC	.	93.0	29.0	75.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
PROSER1	80209	hgsc.bcm.edu	hg19	13	39596542	39596542	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	.	NM_025138	exon9	c.T651A	p.Y217X	ATTGTTATAAGCA	.	145.0	72.0	139.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM9	114088	hgsc.bcm.edu	hg19	14	51475908	51475908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TRIM9	NM_052978	exon5	c.A1196G	p.Q399R	CCCCACTGATCCT	.	149.0	49.0	105.0	0.0	.	188	.	.	.	none	.	.	PASS	Atlas-SNP
EARS2	124454	hgsc.bcm.edu	hg19	16	23540828	23540828	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	EARS2	NM_001083614	exon7	c.G1347A	p.V449V	CCCCAGCACACGC	.	46.0	13.0	47.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
RNF166	115992	hgsc.bcm.edu	hg19	16	88765421	88765421	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RNF166	NM_178841	exon4	c.G498T	p.V166V	GTGCTTCACCAGC	.	14.0	8.0	14.0	0.0	.	3	.	.	.	none	.	.	PASS	Atlas-SNP
UNC13D	201294	hgsc.bcm.edu	hg19	17	73837041	73837041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	UNC13D	NM_199242	exon7	c.T611A	p.M204K	CACCACATGTCCA	.	474.0	146.0	451.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
QRICH2	84074	hgsc.bcm.edu	hg19	17	74288035	74288035	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	QRICH2	NM_032134	exon4	c.C2275T	p.Q759X	CTGCCTGAGGTTG	.	219.0	74.0	223.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
TAF4B	6875	hgsc.bcm.edu	hg19	18	23865865	23865865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TAF4B	NM_005640	exon7	c.G992A	p.R331Q	CCTTACGACAACT	.	197.0	104.0	234.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
LPPR3	0	hgsc.bcm.edu	hg19	19	814747	814747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	.	NM_001270366	exon6	c.A602G	p.K201R	AAGGTCTTCCTGT	.	36.0	11.0	34.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF607	84775	hgsc.bcm.edu	hg19	19	38190209	38190209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ZNF607	NM_032689	exon5	c.C823A	p.H275N	CAGTATGAATACT	.	119.0	49.0	103.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
SIPA1L3	23094	hgsc.bcm.edu	hg19	19	38621370	38621370	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	SIPA1L3	NM_015073	exon10	c.A3101C	p.K1034T	CTGTGAAGGTGGT	.	92.0	28.0	87.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF780B	163131	hgsc.bcm.edu	hg19	19	40540344	40540344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ZNF780B	NM_001005851	exon5	c.C2422T	p.P808S	TCAAAGGGTTTCT	.	100.0	38.0	63.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
CLPTM1	1209	hgsc.bcm.edu	hg19	19	45495628	45495628	+	Missense_Mutation	SNP	G	G	A	rs369873479		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CLPTM1	NM_001294	exon13	c.G1693A	p.V565I	ATGCCCGTTATGT	.	261.0	100.0	282.0	0.0	.	109	.	.	.	weak	.	.	PASS	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	hg19	19	55493701	55493701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	NLRP2	NM_017852	exon6	c.A635T	p.Y212F	TGCTGTATGGTCC	.	135.0	53.0	113.0	0.0	.	161	.	.	.	none	.	.	PASS	Atlas-SNP
RPL3	6122	hgsc.bcm.edu	hg19	22	39714484	39714484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RPL3	NM_001033853	exon2	c.G117T	p.K39N	GACCGGCTTGGAC	.	55.0	13.0	68.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
YY2	404281	hgsc.bcm.edu	hg19	X	21875588	21875588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	YY2	NM_206923	exon1	c.G986A	p.R329H	ATTTGCGCACACA	.	289.0	203.0	253.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
DAP3	7818	hgsc.bcm.edu	hg19	1	155695184	155695185	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	DAP3	NM_033657	exon5	c.282_283insA	p.F94fs	.	.	178.0	63.0	163.0	0.0	.	46	.	0.353933	0	none	.	.	PASS	Atlas-INDEL
RTL1	388015	hgsc.bcm.edu	hg19	14	101348358	101348358	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RTL1	NM_001134888	exon1	c.2769delG	p.K923fs	.	.	53.0	17.0	42.0	0.0	.	120	.	0.320755	0	none	.	.	PASS	Atlas-INDEL
CCDC13	152206	hgsc.bcm.edu	hg19	3	42793437	42793438	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CCDC13	NM_144719	exon5	c.594_595insGA	p.D198fs	.	.	83.0	25.0	124.0	0.0	.	71	.	0.301205	0	none	.	.	PASS	Atlas-INDEL
EFCAB6	64800	hgsc.bcm.edu	hg19	22	44107398	44107399	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	EFCAB6	NM_022785	exon10	c.988_989insT	p.V330fs	.	.	88.0	25.0	74.0	0.0	.	177	.	0.284091	0	none	.	.	PASS	Atlas-INDEL
