Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
XPO1	7514	hgsc.bcm.edu	hg19	2	61709536	61709536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	XPO1	NM_003400	exon23	c.C2951T	p.S984L	AAGGCCGACTTAA	.	128.0	12.0	156.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141643776	141643776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	LRP1B,NS,carcinoma,0,1	LRP1B	NM_018557	exon24	c.C3895G	p.Q1299E	AACTTTGATTGAA	.	97.0	80.0	97.0	0.0	.	1315	.	.	.	none	.	.	PASS	Atlas-SNP
IQCF2	389123	hgsc.bcm.edu	hg19	3	51897176	51897176	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	IQCF2	NM_203424	exon3	c.C285A	p.A95A	GATCGCCTACGCA	.	92.0	4.0	89.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
ACTL6A	86	hgsc.bcm.edu	hg19	3	179304341	179304341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ACTL6A	NM_004301	exon13	c.G1130A	p.R377Q	GTATGCGGTTGAA	.	61.0	53.0	75.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL3	26249	hgsc.bcm.edu	hg19	5	136963990	136963990	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	KLHL3	NM_017415	exon13	c.C1587T	p.N529N	ACCTGCGTTGCGC	.	260.0	90.0	145.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGA1	56114	hgsc.bcm.edu	hg19	5	140711928	140711928	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	PCDHGA1	NM_018912	exon1	c.G1677A	p.A559A	CAACGCGCCCGAG	.	431.0	204.0	320.0	0.0	.	397	.	.	.	none	.	.	PASS	Atlas-SNP
DRD1	1812	hgsc.bcm.edu	hg19	5	174870046	174870046	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	DRD1	NM_000794	exon2	c.C57T	p.D19D	AGAGAAGTCCCTC	.	190.0	77.0	122.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	hg19	6	42657391	42657391	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	UBR2	NM_015255	exon46	c.G5109A	p.E1703E	TGGGGAGACCGAC	.	393.0	351.0	495.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
DOPEY1	23033	hgsc.bcm.edu	hg19	6	83862077	83862077	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	DOPEY1	NM_015018	exon30	c.A6120G	p.L2040L	GACATTACTCTCT	.	66.0	4.0	62.0	0.0	.	190	.	.	.	none	.	.	PASS	Atlas-SNP
USP45	85015	hgsc.bcm.edu	hg19	6	99930682	99930682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	USP45	NM_001080481	exon8	c.G792T	p.E264D	TTCAGTCTCCTTC	.	86.0	80.0	100.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
IRF5	3663	hgsc.bcm.edu	hg19	7	128587532	128587532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	IRF5	NM_001098629	exon6	c.C730T	p.P244S	AGCCTGCCCCCTG	.	54.0	23.0	40.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	hg19	10	108427534	108427534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SORCS1	NM_001206572	exon17	c.A2216G	p.N739S	TGGCCATTGCTGT	.	34.0	31.0	36.0	0.0	.	534	.	.	.	none	.	.	PASS	Atlas-SNP
OR52J3	119679	hgsc.bcm.edu	hg19	11	5068288	5068288	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	OR52J3,NS,carcinoma,0,1	OR52J3	NM_001001916	exon1	c.A533T	p.H178L	TAGCCCATTCCTA	.	117.0	112.0	163.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
IL10RA	3587	hgsc.bcm.edu	hg19	11	117866403	117866403	+	Missense_Mutation	SNP	G	G	A	rs145975996	bycluster	TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	IL10RA	NM_001558	exon6	c.G788A	p.R263Q	GGCGCCGAAAGAA	.	42.0	20.0	43.0	0.0	.	46	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
ARHGAP9	64333	hgsc.bcm.edu	hg19	12	57869643	57869643	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ARHGAP9	NM_001080157	exon9	c.C1284A	p.R428R	CAGCGCGCGGTGC	.	65.0	4.0	31.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
EFHA1	221154	hgsc.bcm.edu	hg19	13	22088516	22088516	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	EFHA1	NM_152726	exon7	c.G639A	p.V213V	AGTTTTCACTGTC	.	93.0	9.0	98.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
KL	9365	hgsc.bcm.edu	hg19	13	33591076	33591076	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	KL	NM_004795	exon1	c.C498T	p.N166N	CCCCAACCGCGAG	.	18.0	6.0	23.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
RANBP10	57610	hgsc.bcm.edu	hg19	16	67840335	67840335	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	RANBP10	NM_020850	exon1	c.G105A	p.L35L	CCGGCTCAGCTCC	.	18.0	6.0	14.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
AKAP10	11216	hgsc.bcm.edu	hg19	17	19861611	19861611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	AKAP10	NM_007202	exon4	c.T593C	p.F198S	GTTAAAAAAGACG	.	99.0	49.0	73.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9065718	9065718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	MUC16	NM_024690	exon3	c.C21728A	p.S7243Y	CTCAGGGAGGAAA	.	220.0	16.0	198.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
LOC643669	0	hgsc.bcm.edu	hg19	19	39401467	39401467	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	.	NM_001243212	exon4	c.G447C	p.E149D	AAAGGTCTCCATG	.	5.0	5.0	4.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF761	388561	hgsc.bcm.edu	hg19	19	53958709	53958709	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ZNF761	NM_001008401	exon7	c.T948A	p.H316Q	AAGACATAGGATA	.	114.0	97.0	114.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF761	388561	hgsc.bcm.edu	hg19	19	53958711	53958711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ZNF761	NM_001008401	exon7	c.G950A	p.R317K	GACATAGGATAAT	.	114.0	98.0	115.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
GGTLC1	92086	hgsc.bcm.edu	hg19	20	23967129	23967129	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	GGTLC1	NM_178311	exon2	c.G120A	p.L40L	CACAGACAGGTGA	.	101.0	56.0	56.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	hg19	21	19685347	19685347	+	Silent	SNP	T	T	G	rs111276490	alternate_allele	TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	TMPRSS15	NM_002772	exon18	c.A2080C	p.R694R	GGATTCTGAACCG	.	114.0	107.0	119.0	0.0	.	189	.	.	.	alt	T|0.500;C|0.500	.	PASS	Atlas-SNP
CCDC116	164592	hgsc.bcm.edu	hg19	22	21989095	21989095	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	CCDC116	NM_152612	exon4	c.C743G	p.S248X	TGGGCTCAAGCTC	.	181.0	8.0	171.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
ATP8	0	hgsc.bcm.edu	hg19	MT	8368	8368	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	.	ENST00000361851	exon1	c.G3A	p.M1M	TGAAATGCCCCAA	.	14.0	9.0	18.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47162849	47162850	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SETD2	NM_014159	exon3	c.3277_3278del	p.1093_1093del	.	.	141.0	121.0	167.0	0.0	.	721	.	0.858156	0	none	.	.	PASS	Atlas-INDEL
