Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
JAK1	3716	hgsc.bcm.edu	hg19	1	65344759	65344759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	JAK1	NM_002227	exon4	c.G278A	p.R93H	ATGGTGCGATTTG	.	45.0	25.0	53.0	0.0	.	209	.	.	.	none	.	.	PASS	Atlas-SNP
SNX7	51375	hgsc.bcm.edu	hg19	1	99150445	99150445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SNX7	NM_015976	exon2	c.C185A	p.A62D	AGGATGCCTCATT	.	111.0	37.0	110.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
SLC9C2	284525	hgsc.bcm.edu	hg19	1	173505010	173505010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	SLC9A11,rectum,carcinoma,0,1	.	NM_178527	exon15	c.C1734A	p.F578L	TTCCAAGAAAGTT	.	113.0	29.0	77.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
OR13G1	441933	hgsc.bcm.edu	hg19	1	247835611	247835611	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	OR13G1	NM_001005487	exon1	c.G733C	p.V245L	GGGTCACCACTGT	.	122.0	32.0	122.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	bycluster	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	PIK3CA_ENST00000263967,NS,carcinoma,0,1131	PIK3CA	NM_006218	exon10	c.G1633A	p.E545K	ATCACTGAGCAGG	.	68.0	4.0	92.0	0.0	.	8460	.	.	.	weak	.	.	PASS	Atlas-SNP
LARS	51520	hgsc.bcm.edu	hg19	5	145533344	145533344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	LARS	NM_020117	exon12	c.G1183A	p.D395N	GGGAGTCGGAAGG	.	67.0	31.0	35.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
GRPEL2	134266	hgsc.bcm.edu	hg19	5	148730749	148730749	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	GRPEL2	NM_152407	exon4	c.C582T	p.T194T	TGGCACCGTGGCA	.	105.0	37.0	150.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136599912	136599912	+	Missense_Mutation	SNP	G	G	T	rs200334350		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	BCLAF1	NM_014739	exon4	c.C107A	p.S36Y	GACCTAGAACTAA	.	66.0	7.0	37.0	0.0	.	203	.	.	.	weak	.	.	PASS	Atlas-SNP
SAMD5	389432	hgsc.bcm.edu	hg19	6	147830100	147830100	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SAMD5	NM_001030060	exon1	c.G36A	p.A12A	CAAAGCGCTGCAG	.	55.0	12.0	73.0	0.0	.	4	.	.	.	none	.	.	PASS	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47970797	47970797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PKD1L1	NM_138295	exon6	c.C641T	p.T214M	TCCATCGTGACAG	.	85.0	27.0	110.0	0.0	.	328	.	.	.	none	.	.	PASS	Atlas-SNP
TPK1	27010	hgsc.bcm.edu	hg19	7	144245631	144245631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	TPK1	NM_022445	exon8	c.G566T	p.G189V	GGCTGTCCAACAG	.	145.0	65.0	172.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151845739	151845739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	MLL3_ENST00000355193,NS,carcinoma,0,2	MLL3	NM_170606	exon52	c.G13273T	p.D4425Y	ACAGATCCAAGTC	.	102.0	45.0	128.0	0.0	.	1564	.	.	.	none	.	.	PASS	Atlas-SNP
MYOM2	9172	hgsc.bcm.edu	hg19	8	2044224	2044224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MYOM2	NM_003970	exon18	c.A2263G	p.K755E	CACCATAAAAACT	.	73.0	23.0	74.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
FAM110B	90362	hgsc.bcm.edu	hg19	8	59059734	59059734	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	FAM110B	NM_147189	exon5	c.C945T	p.S315S	GATCAGCTCAGAC	.	45.0	19.0	60.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
CSPP1	79848	hgsc.bcm.edu	hg19	8	68087587	68087587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CSPP1	NM_024790	exon24	c.C3010A	p.H1004N	GATCATCACACCT	.	98.0	5.0	94.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113249531	113249531	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CSMD3	NM_198123	exon67	c.C10515A	p.Y3505X	GAAATTGTAAGAG	.	104.0	38.0	99.0	0.0	.	2325	.	.	.	none	.	.	PASS	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113249566	113249566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CSMD3	NM_198123	exon67	c.G10480T	p.V3494L	CAAATACATCATC	.	80.0	25.0	82.0	0.0	.	2325	.	.	.	none	.	.	PASS	Atlas-SNP
DENND3	22898	hgsc.bcm.edu	hg19	8	142186773	142186773	+	Silent	SNP	C	C	T	rs374490803		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	DENND3	NM_014957	exon15	c.C2379T	p.F793F	AGTCTTCGAAGCC	.	91.0	40.0	121.0	0.0	.	127	.	.	.	weak	.	.	PASS	Atlas-SNP
FAM83H	286077	hgsc.bcm.edu	hg19	8	144809117	144809117	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	FAM83H	NM_198488	exon5	c.C2514G	p.A838A	GCTCTGGGCAGAG	.	22.0	8.0	28.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2110312	2110312	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SMARCA2	NM_139045	exon24	c.C3351T	p.S1117S	TGGATCCCAGTAT	.	102.0	32.0	64.0	0.0	.	313	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84607771	84607771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	.	NM_001001670	exon4	c.G2386T	p.D796Y	GACAAGGATCTGA	.	102.0	37.0	157.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113141740	113141740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SVEP1	NM_153366	exon44	c.A10295G	p.Y3432C	TATTGATAATGTA	.	71.0	33.0	79.0	0.0	.	326	.	.	.	none	.	.	PASS	Atlas-SNP
OR1B1	347169	hgsc.bcm.edu	hg19	9	125391500	125391500	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	OR1B1	NM_001004450	exon1	c.C315T	p.F105F	ATAGAAGAAAAAG	.	55.0	21.0	60.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
OR13A1	79290	hgsc.bcm.edu	hg19	10	45799786	45799786	+	Missense_Mutation	SNP	C	C	T	rs200530280	bycluster;alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	OR13A1,ear,carcinoma,0,1	OR13A1	NM_001004297	exon4	c.G85A	p.E29K	TGAACTCGGTTAC	.	84.0	38.0	95.0	0.0	.	49	.	.	.	alt	C|0.999;A|0.001	.	PASS	Atlas-SNP
PPFIBP2	8495	hgsc.bcm.edu	hg19	11	7618800	7618800	+	Missense_Mutation	SNP	C	C	G	rs17851928	alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PPFIBP2	NM_003621	exon5	c.C382G	p.L128V	AGTGTCCTCACAG	.	19.0	9.0	33.0	0.0	.	87	.	.	.	alt	.	.	PASS	Atlas-SNP
TTC17	55761	hgsc.bcm.edu	hg19	11	43380551	43380551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	TTC17	NM_018259	exon1	c.G47A	p.C16Y	CGCCTTGCTCCGG	.	20.0	10.0	25.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
PICALM	8301	hgsc.bcm.edu	hg19	11	85714416	85714416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PICALM	NM_007166	exon9	c.G886T	p.A296S	TGCTTGCAGCTGT	.	99.0	27.0	74.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA13	221178	hgsc.bcm.edu	hg19	13	24825881	24825881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SPATA13	NM_001166271	exon4	c.C2045A	p.A682D	TGCCTGCTCACCA	.	118.0	49.0	117.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
SHISA2	387914	hgsc.bcm.edu	hg19	13	26620708	26620708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SHISA2	NM_001007538	exon2	c.G831C	p.Q277H	GGGGGACTGAATC	.	85.0	30.0	87.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
DENND4A	10260	hgsc.bcm.edu	hg19	15	65983020	65983020	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	DENND4A	NM_001144823	exon23	c.G3909A	p.V1303V	AAGTCTCACTGGC	.	100.0	29.0	133.0	0.0	.	217	.	.	.	none	.	.	PASS	Atlas-SNP
SIN3A	25942	hgsc.bcm.edu	hg19	15	75692465	75692465	+	Silent	SNP	C	C	T	rs373830836		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SIN3A	NM_001145358	exon12	c.G1770A	p.S590S	AGACCACGAAGGG	.	87.0	32.0	86.0	0.0	.	152	.	.	.	weak	.	.	PASS	Atlas-SNP
CIITA	4261	hgsc.bcm.edu	hg19	16	10992850	10992850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CIITA	NM_000246	exon5	c.C427A	p.Q143K	AAAAGTCAGAAAA	.	137.0	29.0	115.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89349917	89349917	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ANKRD11	NM_001256183	exon9	c.G3033C	p.K1011N	ATCCTTCTTCTCC	.	122.0	69.0	187.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7574002	7574002	+	Missense_Mutation	SNP	C	C	A	rs375338359	alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	TP53_ENST00000269305,NS,malignant_melanoma,-1,10	TP53	NM_000546	exon10	c.G1025T	p.R342L	AGCTCTCGGAACA	.	58.0	3.0	81.0	1.0	.	33396	.	.	.	alt	.	.	PASS	Atlas-SNP
KIAA1468	57614	hgsc.bcm.edu	hg19	18	59888685	59888685	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	KIAA1468	NM_020854	exon5	c.C813T	p.N271N	GAATAACTATAAG	.	98.0	28.0	68.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
RHPN2	85415	hgsc.bcm.edu	hg19	19	33503622	33503622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	RHPN2	NM_033103	exon5	c.C399G	p.I133M	TTCCAGGATAAAA	.	54.0	24.0	50.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0355	9710	hgsc.bcm.edu	hg19	19	34832921	34832921	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	KIAA0355	NM_014686	exon10	c.G2082A	p.L694L	GTCACTGCCTGTG	.	111.0	35.0	133.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
IGFLR1	79713	hgsc.bcm.edu	hg19	19	36230750	36230750	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	IGFLR1	NM_024660	exon4	c.C582G	p.A194A	GGGGTCGGCTTTC	.	159.0	66.0	197.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
CNFN	84518	hgsc.bcm.edu	hg19	19	42893120	42893120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CNFN	NM_032488	exon2	c.T70C	p.W24R	TGTGCCAGTCACT	.	37.0	22.0	50.0	0.0	.	5	.	.	.	none	.	.	PASS	Atlas-SNP
DMPK	1760	hgsc.bcm.edu	hg19	19	46280763	46280763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	DMPK	NM_001081563	exon7	c.C998T	p.T333I	AGCCGTGTCTCCG	.	76.0	31.0	82.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
PRKCG	5582	hgsc.bcm.edu	hg19	19	54385815	54385815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PRKCG	NM_002739	exon1	c.G67T	p.G23W	AGAAAGGGGGCCC	.	156.0	72.0	175.0	0.0	.	246	.	.	.	none	.	.	PASS	Atlas-SNP
KIR3DL3	115653	hgsc.bcm.edu	hg19	19	55239373	55239373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	KIR3DL3,colon,carcinoma,0,1	KIR3DL3	NM_153443	exon4	c.G652A	p.V218I	GTGGTCGTAGGTG	.	146.0	65.0	181.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
SAMHD1	25939	hgsc.bcm.edu	hg19	20	35563508	35563508	+	Missense_Mutation	SNP	G	G	C	rs121434517	bycluster;alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SAMHD1	NM_015474	exon4	c.C433G	p.R145G	TGTATCGAAGACG	.	73.0	4.0	114.0	0.0	.	62	.	.	.	alt	.	.	PASS	Atlas-SNP
EIF1AX	1964	hgsc.bcm.edu	hg19	X	20152121	20152121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	EIF1AX	NM_001412	exon4	c.G209T	p.W70L	TTTATCCAAACCT	.	33.0	20.0	37.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
GPR34	2857	hgsc.bcm.edu	hg19	X	41555435	41555435	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	GPR34	NM_001097579	exon3	c.T549A	p.L183L	TGCTCTTGGTGGA	.	58.0	49.0	60.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
BCORL1	63035	hgsc.bcm.edu	hg19	X	129173153	129173154	+	Frame_Shift_Ins	INS	-	-	CTGG	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	BCORL1	NM_021946	exon9	c.4514_4515insCTGG	p.I1505fs	.	.	38.0	22.0	74.0	0.0	.	213	.	0.578947	0	none	.	.	PASS	Atlas-INDEL
COL4A3BP	10087	hgsc.bcm.edu	hg19	5	74712823	74712828	+	In_Frame_Del	DEL	TACCAT	TACCAT	-	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	TACCAT	TACCAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	COL4A3BP	NM_001130105	exon8	c.1095_1100del	p.365_367del	.	.	73.0	26.0	89.0	0.0	.	72	.	0.356164	0	none	.	.	PASS	Atlas-INDEL
