Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MTOR	2475	hgsc.bcm.edu	hg19	1	11307790	11307790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MTOR	NM_004958	exon8	c.G1117T	p.V373L	GGCACACCTGAGA	.	90.0	18.0	114.0	0.0	.	327	.	.	.	none	.	.	PASS	Atlas-SNP
ZMYM6	9204	hgsc.bcm.edu	hg19	1	35476600	35476600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	ZMYM6,NS,carcinoma,0,2	ZMYM6	NM_007167	exon9	c.C1100T	p.A367V	GGCACCGCCGAAG	.	95.0	37.0	87.0	1.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
LCE2A	353139	hgsc.bcm.edu	hg19	1	152671691	152671691	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	LCE2A	NM_178428	exon2	c.G314C	p.C105S	GGGACTGCTGCTG	.	127.0	32.0	121.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
TNN	63923	hgsc.bcm.edu	hg19	1	175086172	175086172	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	TNN,NS,carcinoma,0,1	TNN	NM_022093	exon10	c.G2217C	p.V739V	GTATGTGGTGCGC	.	120.0	5.0	91.0	1.0	.	297	.	.	.	none	.	.	PASS	Atlas-SNP
DHX9	1660	hgsc.bcm.edu	hg19	1	182850707	182850707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	DHX9	NM_001357	exon24	c.A2839G	p.M947V	CTTAATATGGCTA	.	105.0	76.0	144.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61450209	61450209	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	USP34	NM_014709	exon64	c.C7735G	p.R2579G	CAAGTCGATTATT	.	38.0	10.0	46.0	0.0	.	334	.	.	.	none	.	.	PASS	Atlas-SNP
GCFC2	6936	hgsc.bcm.edu	hg19	2	75921529	75921529	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	.	NM_003203	exon6	c.C858G	p.H286Q	TGAGCGGTGAGTT	.	98.0	40.0	125.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1211L	343990	hgsc.bcm.edu	hg19	2	99411105	99411105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	.	NM_207362	exon10	c.C2779G	p.L927V	GATGCAGTTCCTT	.	144.0	60.0	125.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168103542	168103542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	XIRP2	NM_152381	exon9	c.T5640A	p.H1880Q	AAGCCATCGATGG	.	72.0	18.0	73.0	0.0	.	914	.	.	.	none	.	.	PASS	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220309733	220309733	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SPEG	NM_005876	exon3	c.C665G	p.P222R	CCGGGCCACGGCA	.	22.0	9.0	16.0	0.0	.	272	.	.	.	none	.	.	PASS	Atlas-SNP
MRPL44	65080	hgsc.bcm.edu	hg19	2	224824513	224824513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MRPL44	NM_022915	exon2	c.A442G	p.M148V	CCAGACATGCCCA	.	106.0	47.0	114.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
GOLGA4	2803	hgsc.bcm.edu	hg19	3	37365472	37365472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GOLGA4	NM_001172713	exon15	c.G2161A	p.A721T	TTAAAAGCCCGTC	.	39.0	29.0	44.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
ACY1	95	hgsc.bcm.edu	hg19	3	52023049	52023049	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ACY1	NM_001198895	exon15	c.G1185C	p.L395L	CCTGCTGCCTGCC	.	125.0	98.0	167.0	1.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
PBRM1	55193	hgsc.bcm.edu	hg19	3	52651555	52651555	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	PBRM1	NM_018313	exon16	c.1542-1G>A	.	TTTTTACTGTTGA	.	35.0	23.0	38.0	0.0	.	1252	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113377559	113377559	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KIAA2018	NM_001009899	exon7	c.A2970G	p.S990S	TGTATCTGATGAA	.	134.0	104.0	152.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
CD86	942	hgsc.bcm.edu	hg19	3	121822644	121822644	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	CD86	NM_175862	exon3	c.C350G	p.P117R	AAAAGCCCACAGG	.	77.0	64.0	125.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
USP38	84640	hgsc.bcm.edu	hg19	4	144141548	144141548	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	USP38	NM_032557	exon10	c.G3068C	p.C1023S	GAAGCTGTGGACC	.	71.0	4.0	92.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
SMAD1	4086	hgsc.bcm.edu	hg19	4	146475084	146475084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SMAD1	NM_005900	exon6	c.T1146G	p.I382M	GAAAATTTTTAAC	.	101.0	36.0	141.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
IRF2	3660	hgsc.bcm.edu	hg19	4	185339324	185339324	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	IRF2	NM_002199	exon5	c.C408G	p.I136M	TACCTTGATGTGC	.	186.0	64.0	187.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
UGT3A2	167127	hgsc.bcm.edu	hg19	5	36039694	36039694	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	UGT3A2	NM_174914	exon5	c.T960G	p.F320L	GTGAGCAAAGGCA	.	126.0	46.0	122.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
GFRA3	2676	hgsc.bcm.edu	hg19	5	137610073	137610073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GFRA3	NM_001496	exon1	c.T41C	p.V14A	ATCAGGACTACGG	.	9.0	6.0	8.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
SNRPC	6631	hgsc.bcm.edu	hg19	6	34730469	34730469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SNRPC	NM_003093	exon3	c.T149C	p.I50T	GCCTGATTGACAA	.	22.0	6.0	25.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
PPARD	5467	hgsc.bcm.edu	hg19	6	35392132	35392132	+	Silent	SNP	A	A	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	PPARD	NM_001171818	exon8	c.A654C	p.T218T	CGAGACATTGTGG	.	62.0	22.0	67.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
TCTE1	202500	hgsc.bcm.edu	hg19	6	44254102	44254102	+	Missense_Mutation	SNP	C	C	T	rs149566851	bycluster;by1000genomes;alternate_allele	TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TCTE1	NM_182539	exon3	c.G445A	p.G149S	AGCTGCCGCCATG	.	108.0	22.0	91.0	0.0	.	77	.	.	.	alt	C|1.000;A|0.000	.	PASS	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	hg19	6	46660547	46660547	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TDRD6	NM_001168359	exon1	c.G4682C	p.R1561T	CAGACAGGAGAAA	.	70.0	30.0	86.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
FAM46A	55603	hgsc.bcm.edu	hg19	6	82461531	82461531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	FAM46A	NM_017633	exon2	c.G328A	p.E110K	GCTTCTCGGCCAG	.	67.0	31.0	71.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	hg19	6	117706858	117706858	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ROS1	NM_002944	exon15	c.A2292T	p.G764G	TGTCTTTCCAGCC	.	118.0	53.0	143.0	0.0	.	728	.	.	.	none	.	.	PASS	Atlas-SNP
RAET1G	353091	hgsc.bcm.edu	hg19	6	150240371	150240371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RAET1G	NM_001001788	exon3	c.A439G	p.I147V	GGAAGATCTGTCC	.	130.0	59.0	142.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
GNAI1	2770	hgsc.bcm.edu	hg19	7	79842142	79842142	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GNAI1	NM_002069	exon7	c.A831G	p.K277K	AGAAAAAATCAAA	.	263.0	74.0	198.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
SAMD9	54809	hgsc.bcm.edu	hg19	7	92734539	92734539	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SAMD9	NM_001193307	exon2	c.A872C	p.E291A	AAAACTTCCACAA	.	95.0	52.0	88.0	0.0	.	239	.	.	.	none	.	.	PASS	Atlas-SNP
SLC26A5	375611	hgsc.bcm.edu	hg19	7	103029511	103029511	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SLC26A5	NM_206883	exon14	c.T1458C	p.Y486Y	CAAACCATAGTCC	.	78.0	17.0	54.0	0.0	.	231	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1549	57670	hgsc.bcm.edu	hg19	7	138602963	138602963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KIAA1549	NM_020910	exon2	c.A1409G	p.D470G	GAGAAGTCTGCTA	.	77.0	23.0	66.0	0.0	.	314	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM176B	28959	hgsc.bcm.edu	hg19	7	150493608	150493608	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TMEM176B	NM_014020	exon2	c.C50G	p.P17R	TGGGATGGCCTAG	.	129.0	6.0	72.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77617295	77617295	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	ZFHX4,NS,carcinoma,0,1	ZFHX4	NM_024721	exon2	c.G972T	p.G324G	ACAGGGGATTGGC	.	158.0	61.0	143.0	0.0	.	878	.	.	.	none	.	.	PASS	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77617296	77617296	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZFHX4	NM_024721	exon2	c.A973T	p.I325F	CAGGGGATTGGCA	.	161.0	63.0	142.0	0.0	.	878	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A13	6540	hgsc.bcm.edu	hg19	12	346409	346409	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SLC6A13	NM_016615	exon6	c.T611A	p.L204Q	CAGCGCAGGGCCC	.	164.0	41.0	133.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	hg19	12	7046365	7046365	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ATN1	NM_001007026	exon5	c.C1935G	p.S645S	CCCGTCCCCGGGG	.	95.0	54.0	76.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
TAS2R13	50838	hgsc.bcm.edu	hg19	12	11061866	11061866	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TAS2R13	NM_023920	exon1	c.T32G	p.L11R	ATTACAAGAGTGA	.	54.0	31.0	41.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
DPY19L2	283417	hgsc.bcm.edu	hg19	12	64041138	64041138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	DPY19L2	NM_173812	exon5	c.T596A	p.I199K	GAGGCTATGATTA	.	189.0	40.0	148.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
RFX4	5992	hgsc.bcm.edu	hg19	12	107154995	107154995	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RFX4	NM_001206691	exon18	c.T1983A	p.T661T	CCCCACTTCCCGG	.	528.0	282.0	430.0	1.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	hg19	12	117655909	117655909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	NOS1	NM_001204218	exon29	c.A4333G	p.N1445D	GGCGGTTGGTCAC	.	603.0	135.0	458.0	0.0	.	240	.	.	.	none	.	.	PASS	Atlas-SNP
RIMBP2	23504	hgsc.bcm.edu	hg19	12	130919339	130919339	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RIMBP2	NM_015347	exon11	c.C2142T	p.D714D	CTTGAAGTCTGGA	.	206.0	30.0	167.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
TP53BP1	7158	hgsc.bcm.edu	hg19	15	43749140	43749140	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TP53BP1	NM_001141980	exon12	c.A1666T	p.M556L	GAGACATGGGTTC	.	66.0	27.0	108.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1E	4643	hgsc.bcm.edu	hg19	15	59501015	59501015	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MYO1E	NM_004998	exon14	c.C1395T	p.D465D	GCACACGTCATCC	.	71.0	16.0	73.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	hg19	15	63011987	63011987	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TLN2	NM_015059	exon22	c.C2899G	p.Q967E	ATCCCTCAGCTGG	.	36.0	13.0	52.0	0.0	.	253	.	.	.	none	.	.	PASS	Atlas-SNP
RASGRF1	5923	hgsc.bcm.edu	hg19	15	79264261	79264261	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RASGRF1	NM_002891	exon27	c.C3676T	p.R1226X	TCTCTCGGATAAT	.	216.0	75.0	233.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
ZP2	7783	hgsc.bcm.edu	hg19	16	21215430	21215430	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZP2	NM_003460	exon9	c.A893T	p.Q298L	TGCAGCTGGCTCA	.	88.0	33.0	102.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
FOXC2	2303	hgsc.bcm.edu	hg19	16	86601010	86601010	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	FOXC2	NM_005251	exon1	c.T69G	p.N23K	GCAGAATTACTAC	.	85.0	32.0	93.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
TSR1	55720	hgsc.bcm.edu	hg19	17	2232753	2232753	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TSR1	NM_018128	exon11	c.T1787A	p.M596K	ACCACCATATTCA	.	75.0	26.0	68.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
PITPNM3	83394	hgsc.bcm.edu	hg19	17	6375990	6375990	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	PITPNM3	NM_031220	exon11	c.G1416A	p.Q472Q	GAGGGACTGCCCA	.	28.0	15.0	33.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
ST6GALNAC2	10610	hgsc.bcm.edu	hg19	17	74570497	74570497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	ST6GALNAC2,colon,carcinoma,0,1	ST6GALNAC2	NM_006456	exon3	c.G311A	p.R104H	CTCAGGCGGTCCC	.	44.0	16.0	40.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
TRMT1	55621	hgsc.bcm.edu	hg19	19	13226494	13226494	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TRMT1	NM_001136035	exon4	c.A399T	p.E133D	CAGGTTTTCACTC	.	299.0	114.0	280.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
SIN3B	23309	hgsc.bcm.edu	hg19	19	16964967	16964967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SIN3B	NM_015260	exon8	c.T953C	p.L318P	GGGTGCTGAAGAG	.	65.0	28.0	64.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
LSR	51599	hgsc.bcm.edu	hg19	19	35757260	35757260	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	LSR	NM_015925	exon5	c.866-2A>G	.	CCTCACAGTGTAT	.	140.0	39.0	175.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
ZSCAN4	201516	hgsc.bcm.edu	hg19	19	58187881	58187881	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZSCAN4	NM_152677	exon3	c.C368G	p.T123S	ACCTGACTGATGA	.	73.0	26.0	73.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
ENTPD6	955	hgsc.bcm.edu	hg19	20	25198149	25198149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	ENTPD6,right_upper_lobe,carcinoma,0,1	ENTPD6	NM_001247	exon9	c.G810C	p.Q270H	CCTGCAGGCCTCC	.	131.0	32.0	132.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
GSPT2	23708	hgsc.bcm.edu	hg19	X	51486959	51486959	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GSPT2	NM_018094	exon1	c.G237T	p.P79P	TCAGCCGCCCACC	.	28.0	9.0	21.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
GSPT2	23708	hgsc.bcm.edu	hg19	X	51486960	51486960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GSPT2	NM_018094	exon1	c.C238T	p.P80S	CAGCCGCCCACCC	.	28.0	9.0	20.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
LAS1L	81887	hgsc.bcm.edu	hg19	X	64749564	64749564	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	LAS1L	NM_031206	exon5	c.G709T	p.E237X	CTGACTCCGTACT	.	218.0	75.0	235.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
KIF4A	24137	hgsc.bcm.edu	hg19	X	69637856	69637856	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KIF4A	NM_012310	exon29	c.3372+2T>C	.	GCAAGGTAGGATC	.	115.0	44.0	134.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	hg19	X	144904633	144904633	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SLITRK2	NM_001144005	exon5	c.G690C	p.W230C	GGCCTGGCTAGAC	.	171.0	36.0	188.0	0.0	.	221	.	.	.	none	.	.	PASS	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	hg19	X	144904634	144904634	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SLITRK2	NM_001144005	exon5	c.C691T	p.L231L	GCCTGGCTAGACA	.	171.0	37.0	187.0	0.0	.	221	.	.	.	none	.	.	PASS	Atlas-SNP
C16orf62	57020	hgsc.bcm.edu	hg19	16	19711796	19711797	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	C16orf62	NM_020314	exon31	c.3157_3158insG	p.X1053delinsW	.	.	85.0	28.0	99.0	0.0	.	164	.	0.329412	0	none	.	.	PASS	Atlas-INDEL
PDE7B	27115	hgsc.bcm.edu	hg19	6	136512787	136512788	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	PDE7B,NS,carcinoma,0,1	PDE7B	NM_018945	exon13	c.1162_1163insA	p.E388fs	.	.	35.0	12.0	38.0	0.0	.	55	.	0.342857	0	none	.	.	PASS	Atlas-INDEL
ASPM	259266	hgsc.bcm.edu	hg19	1	197073973	197073974	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ASPM	NM_018136	exon18	c.4408_4409insT	p.I1470fs	.	.	58.0	45.0	69.0	0.0	.	444	.	0.775862	0	none	.	.	PASS	Atlas-INDEL
ANKRD26	22852	hgsc.bcm.edu	hg19	10	27349330	27349331	+	In_Frame_Ins	INS	-	-	TCA	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ANKRD26	NM_014915	exon15	c.1508_1509insTGA	p.K503delinsMK	.	.	143.0	44.0	171.0	0.0	.	179	.	0.307692	0	none	.	.	PASS	Atlas-INDEL
MGA	23269	hgsc.bcm.edu	hg19	15	42041819	42041837	+	Frame_Shift_Del	DEL	CTAATGTAATAAAACAAAA	CTAATGTAATAAAACAAAA	-	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	CTAATGTAATAAAACAAAA	CTAATGTAATAAAACAAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MGA	NM_001164273	exon17	c.6013_6031del	p.2005_2011del	.	.	111.0	24.0	153.0	0.0	.	264	.	0.216216	0	none	.	.	PASS	Atlas-INDEL
SETD2	29072	hgsc.bcm.edu	hg19	3	47164114	47164114	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SETD2	NM_014159	exon3	c.2013delA	p.L671fs	.	.	85.0	70.0	102.0	0.0	.	721	.	0.823529	0	none	.	.	PASS	Atlas-INDEL
NCAPD3	23310	hgsc.bcm.edu	hg19	11	134038822	134038822	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	NCAPD3	NM_015261	exon25	c.3230delA	p.Q1077fs	.	.	91.0	35.0	110.0	0.0	.	141	.	0.384615	0	none	.	.	PASS	Atlas-INDEL
ZNF564	163050	hgsc.bcm.edu	hg19	19	12639496	12639497	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZNF564	NM_144976	exon2	c.18_19del	p.6_7del	.	.	146.0	54.0	140.0	0.0	.	55	.	0.369863	0	none	.	.	PASS	Atlas-INDEL
