Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PEF1	553115	hgsc.bcm.edu	hg19	1	32100955	32100955	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PEF1	NM_012392	exon2	c.G193T	p.G65X	GGTGTCCATAGGG	.	51.0	18.0	45.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
DEDD	9191	hgsc.bcm.edu	hg19	1	161092019	161092019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DEDD	NM_001039711	exon5	c.T875G	p.L292R	ACCAGCAGCTTGA	.	95.0	32.0	95.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
RGS1	5996	hgsc.bcm.edu	hg19	1	192547354	192547354	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RGS1	NM_002922	exon4	c.G283C	p.G95R	TTAGCTGGTCAAA	.	151.0	40.0	187.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	hg19	1	208215581	208215581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PLXNA2	NM_025179	exon22	c.G4148A	p.R1383Q	TTGCCCCGGTCGC	.	91.0	30.0	91.0	0.0	.	178	.	.	.	none	.	.	PASS	Atlas-SNP
NUP133	55746	hgsc.bcm.edu	hg19	1	229631732	229631732	+	Silent	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NUP133	NM_018230	exon7	c.C882A	p.I294I	TTTACTGATGTTT	.	74.0	31.0	65.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
LPIN1	23175	hgsc.bcm.edu	hg19	2	11913751	11913751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	LPIN1	NM_001261428	exon6	c.T749C	p.L250P	GAACTCTTCCTAA	.	113.0	35.0	127.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
IFIH1	64135	hgsc.bcm.edu	hg19	2	163167397	163167397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	IFIH1	NM_022168	exon2	c.T500C	p.L167P	TTTAGTAGCTCTC	.	54.0	15.0	55.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
NABP1	64859	hgsc.bcm.edu	hg19	2	192543405	192543405	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	.	NM_001031716	exon1	c.A65C	p.N22T	ACTTAAATGTCGT	.	100.0	32.0	113.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	hg19	2	198274598	198274598	+	Missense_Mutation	SNP	G	G	T	rs1044635	alternate_allele	TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SF3B1	NM_012433	exon7	c.C800A	p.T267N	CCAGGAGTAGCAG	.	222.0	78.0	197.0	0.0	.	1038	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
DNAJB2	3300	hgsc.bcm.edu	hg19	2	220150708	220150708	+	Splice_Site	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DNAJB2	NM_001039550	exon10	c.824-1G>T	.	TCCCCAGATGTGT	.	67.0	4.0	69.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
DDX60	55601	hgsc.bcm.edu	hg19	4	169172121	169172121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DDX60	NM_017631	exon28	c.G3842A	p.R1281K	CCTTTTCTAAAGA	.	64.0	16.0	53.0	0.0	.	304	.	.	.	none	.	.	PASS	Atlas-SNP
PALLD	23022	hgsc.bcm.edu	hg19	4	169433375	169433375	+	Silent	SNP	G	G	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PALLD	NM_001166108	exon2	c.G720A	p.R240R	GGCCAGGCATTGC	.	121.0	5.0	119.0	0.0	.	179	.	.	.	none	.	.	PASS	Atlas-SNP
WWC2	80014	hgsc.bcm.edu	hg19	4	184166688	184166688	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	WWC2	NM_024949	exon6	c.A722C	p.D241A	AACAAGATCTGAT	.	50.0	14.0	54.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
PDZD2	23037	hgsc.bcm.edu	hg19	5	32074625	32074625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PDZD2	NM_178140	exon17	c.G3413T	p.S1138I	AGCCCAGTGGCTC	.	49.0	19.0	64.0	0.0	.	306	.	.	.	none	.	.	PASS	Atlas-SNP
FCHO2	115548	hgsc.bcm.edu	hg19	5	72383545	72383545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	FCHO2	NM_138782	exon25	c.A2375G	p.Y792C	CTGGCTATAGGCT	.	229.0	61.0	213.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82785943	82785943	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	VCAN	NM_004385	exon3	c.A97T	p.R33W	CCGGTGAGGGGCT	.	115.0	32.0	102.0	0.0	.	498	.	.	.	none	.	.	PASS	Atlas-SNP
VARS2	57176	hgsc.bcm.edu	hg19	6	30888201	30888201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	VARS2	NM_001167734	exon14	c.T1475C	p.L492P	TGGTACTGCCCAT	.	61.0	19.0	48.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF76	7629	hgsc.bcm.edu	hg19	6	35260658	35260658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ZNF76	NM_003427	exon11	c.C1166T	p.A389V	TCCCAGCCGCCTC	.	148.0	45.0	129.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38709565	38709565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DNAH8	NM_001206927	exon8	c.A1195G	p.M399V	AAACGCATGTCAG	.	77.0	27.0	83.0	0.0	.	1239	.	.	.	none	.	.	PASS	Atlas-SNP
BAI3	577	hgsc.bcm.edu	hg19	6	69943243	69943243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	BAI3	NM_001704	exon18	c.C2542T	p.H848Y	GCATCCCATACGA	.	215.0	68.0	266.0	0.0	.	451	.	.	.	none	.	.	PASS	Atlas-SNP
RFX6	222546	hgsc.bcm.edu	hg19	6	117245902	117245902	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RFX6	NM_173560	exon15	c.T1626A	p.N542K	TAATAATGACAAA	.	92.0	20.0	97.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
AEBP1	165	hgsc.bcm.edu	hg19	7	44152208	44152208	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	AEBP1	NM_001129	exon18	c.G2269C	p.V757L	CCCTTCGTGCTGG	.	151.0	40.0	117.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
OGDH	4967	hgsc.bcm.edu	hg19	7	44714122	44714122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	OGDH	NM_002541	exon7	c.G901A	p.G301S	GAGAATGGCGTGG	.	126.0	55.0	104.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
VSTM2A	222008	hgsc.bcm.edu	hg19	7	54617692	54617692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	VSTM2A,NS,carcinoma,0,2	VSTM2A	NM_182546	exon4	c.C463T	p.R155C	CATGCCCGCAGAA	.	32.0	13.0	30.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
C7orf55-LUC7L2	100996928	hgsc.bcm.edu	hg19	7	139107032	139107032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	.	NM_001244584	exon11	c.T1323A	p.N441K	TGCTAATGGCAGA	.	200.0	102.0	170.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PRSS55	203074	hgsc.bcm.edu	hg19	8	10390473	10390473	+	Nonsense_Mutation	SNP	G	G	A	rs150767306	alternate_allele	TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PRSS55	NM_001197020	exon4	c.G656A	p.W219X	TGGACTGGGAGGA	.	95.0	34.0	109.0	0.0	.	67	.	.	.	alt	G|1.000;T|0.000	.	PASS	Atlas-SNP
NUGGC	389643	hgsc.bcm.edu	hg19	8	27888815	27888815	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	.	NM_001010906	exon15	c.G1853C	p.G618A	CTTATCCCAATTT	.	192.0	49.0	202.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
NR5A1	2516	hgsc.bcm.edu	hg19	9	127262609	127262609	+	Silent	SNP	C	C	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	NR5A1,colon,carcinoma,0,1	NR5A1	NM_004959	exon4	c.G630T	p.P210P	GCCGTACGGCAGC	.	9.0	5.0	6.0	2.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
KIF20B	9585	hgsc.bcm.edu	hg19	10	91498338	91498338	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	KIF20B	NM_016195	exon20	c.A3620C	p.E1207A	TAAAAGAAGAAGA	.	59.0	23.0	46.0	0.0	.	191	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM8	81603	hgsc.bcm.edu	hg19	10	104404881	104404881	+	Silent	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	TRIM8	NM_030912	exon1	c.C507T	p.Y169Y	CTGCTACTACAGC	.	46.0	9.0	42.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRJ	5795	hgsc.bcm.edu	hg19	11	48149503	48149503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PTPRJ	NM_001098503	exon7	c.C1265T	p.P422L	TCATCCCCGGACT	.	124.0	42.0	116.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP
NAALADL1	10004	hgsc.bcm.edu	hg19	11	64822081	64822081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NAALADL1	NM_005468	exon5	c.G733A	p.E245K	CTCGCTCCACTCC	.	35.0	8.0	39.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
PZP	5858	hgsc.bcm.edu	hg19	12	9356427	9356427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PZP	NM_002864	exon2	c.A204T	p.E68D	CCTGTTTTCCCTG	.	154.0	51.0	141.0	0.0	.	422	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJC22	79962	hgsc.bcm.edu	hg19	12	49743366	49743366	+	Silent	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DNAJC22	NM_024902	exon2	c.T711C	p.L237L	CCTCCTTCTGCCT	.	277.0	87.0	307.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
GPR18	2841	hgsc.bcm.edu	hg19	13	99908051	99908051	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	GPR18,NS,carcinoma,0,1	GPR18	NM_001098200	exon2	c.C76G	p.L26V	AGACAAGGGCTGC	.	140.0	31.0	142.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
SLC7A8	23428	hgsc.bcm.edu	hg19	14	23607203	23607203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SLC7A8	NM_012244	exon7	c.G943A	p.A315T	TCCAGGCCATGAC	.	113.0	26.0	119.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R36	145376	hgsc.bcm.edu	hg19	14	65032084	65032084	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	.	NM_172365	exon5	c.T279A	p.D93E	GACAGATAAAAGA	.	37.0	13.0	64.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
EIF2S1	1965	hgsc.bcm.edu	hg19	14	67848335	67848335	+	Silent	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	EIF2S1	NM_004094	exon6	c.T606C	p.Y202Y	TGGTTATGAAGGC	.	166.0	58.0	117.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D2B	23102	hgsc.bcm.edu	hg19	15	78290654	78290654	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	TBC1D2B_ENST00000300584,NS,carcinoma,0,3	TBC1D2B	NM_144572	exon13	c.C2740G	p.L914V	GGCGTAGGGGGAA	.	15.0	6.0	13.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0556	23247	hgsc.bcm.edu	hg19	16	27720066	27720066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	KIAA0556	NM_015202	exon13	c.T1430C	p.I477T	ATGCCATCTACGT	.	139.0	28.0	110.0	0.0	.	348	.	.	.	none	.	.	PASS	Atlas-SNP
TOP3A	7156	hgsc.bcm.edu	hg19	17	18212208	18212208	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	TOP3A	NM_004618	exon2	c.T228C	p.H76H	ATACAGATGATAA	.	46.0	15.0	35.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
EFTUD2	9343	hgsc.bcm.edu	hg19	17	42945230	42945230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	EFTUD2	NM_004247	exon13	c.C1094T	p.S365F	CTCTGGGAGCTGC	.	29.0	17.0	20.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
WNT3	7473	hgsc.bcm.edu	hg19	17	44845986	44845986	+	Silent	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	WNT3	NM_030753	exon4	c.A768A	p.G256G	GGTCTCCACCCAG	.	174.0	79.0	146.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	hg19	17	78321576	78321576	+	Silent	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RNF213	NM_001256071	exon29	c.C9441T	p.R3147R	CTTCCGCCTGATT	.	88.0	6.0	79.0	0.0	.	766	.	.	.	none	.	.	PASS	Atlas-SNP
AP3D1	8943	hgsc.bcm.edu	hg19	19	2151253	2151253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	AP3D1	NM_001261826	exon1	c.C81G	p.N27K	CTTGTGGTTACGG	.	34.0	16.0	29.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
PSMC4	5704	hgsc.bcm.edu	hg19	19	40478461	40478461	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PSMC4	NM_006503	exon3	c.A321G	p.T107T	TACCACAGGTGTG	.	46.0	11.0	30.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	hg19	19	42861598	42861598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	MEGF8	NM_001271938	exon28	c.C4873G	p.L1625V	CACACCCTTACTG	.	163.0	44.0	182.0	0.0	.	358	.	.	.	none	.	.	PASS	Atlas-SNP
NRIP1	8204	hgsc.bcm.edu	hg19	21	16337670	16337670	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NRIP1	NM_003489	exon4	c.T2844C	p.D948D	GGACAAATCTCGC	.	157.0	44.0	150.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
NCAM2	4685	hgsc.bcm.edu	hg19	21	22658662	22658662	+	Silent	SNP	A	A	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NCAM2	NM_004540	exon4	c.A411T	p.R137R	TTGCCGAGTTAGC	.	55.0	15.0	64.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
SON	6651	hgsc.bcm.edu	hg19	21	34932382	34932382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SON	NM_032195	exon7	c.A6857G	p.N2286S	GGTACAACTATTT	.	180.0	55.0	200.0	0.0	.	343	.	.	.	none	.	.	PASS	Atlas-SNP
RHBDD3	25807	hgsc.bcm.edu	hg19	22	29656765	29656765	+	Silent	SNP	C	C	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RHBDD3	NM_012265	exon5	c.G621T	p.G207G	CCAGCACCCCGCC	.	29.0	9.0	23.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
MAP7D3	79649	hgsc.bcm.edu	hg19	X	135314169	135314169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	MAP7D3	NM_024597	exon8	c.A947G	p.N316S	CTTGTGTTGCAGA	.	192.0	23.0	209.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
ELF3	1999	hgsc.bcm.edu	hg19	1	201980419	201980420	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	ELF3_ENST00000359651,NS,carcinoma,0,2	ELF3	NM_004433	exon2	c.155_156insG	p.E52fs	.	.	144.0	11.0	135.0	0.0	.	92	.	0.0763889	0	none	.	.	PASS	Atlas-INDEL
