Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
CR1L	1379	hgsc.bcm.edu	hg19	1	207818592	207818592	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	CR1L	NM_175710	exon1	c.T14G	p.V5G	CTCCCGTCCGTCT	.	117.0	59.0	172.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
C1orf35	79169	hgsc.bcm.edu	hg19	1	228290925	228290925	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	C1orf35	NM_024319	exon1	c.T4G	p.F2V	AGCCGAACATGGC	.	48.0	28.0	62.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73827935	73827935	+	Silent	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ALMS1	NM_015120	exon18	c.T11796C	p.R3932R	AAAACGTGAAGAG	.	51.0	28.0	76.0	0.0	.	384	.	.	.	none	.	.	PASS	Atlas-SNP
SPAG16	79582	hgsc.bcm.edu	hg19	2	214161997	214161997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SPAG16	NM_024532	exon3	c.C195G	p.D65E	AGATGACAATTTT	.	99.0	36.0	61.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
XRN1	54464	hgsc.bcm.edu	hg19	3	142141567	142141567	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	XRN1	NM_001042604	exon8	c.T824A	p.I275N	CTTTCAATATCAT	.	66.0	28.0	88.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
SLBP	7884	hgsc.bcm.edu	hg19	4	1701385	1701385	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SLBP	NM_006527	exon5	c.G385C	p.E129Q	CTGTCTCAAAGTC	.	114.0	56.0	138.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13604361	13604361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	.	NM_148894	exon10	c.G4163A	p.S1388N	AACTTACTTCCAA	.	125.0	63.0	127.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
GRIA1	2890	hgsc.bcm.edu	hg19	5	153078528	153078528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	GRIA1	NM_001258021	exon10	c.C1377G	p.H459Q	CAAGCACGTGGGC	.	74.0	33.0	104.0	0.0	.	321	.	.	.	none	.	.	PASS	Atlas-SNP
PTK7	5754	hgsc.bcm.edu	hg19	6	43044271	43044271	+	Silent	SNP	T	T	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	PTK7	NM_152882	exon1	c.T45G	p.P15P	GTTGCCTCTGCTC	.	25.0	18.0	34.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
SP8	221833	hgsc.bcm.edu	hg19	7	20824956	20824956	+	Silent	SNP	C	C	G	rs201180283		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SP8	NM_182700	exon2	c.G480C	p.G160G	GCCGCCCCCGCCG	.	12.0	4.0	9.0	0.0	.	43	.	.	.	weak	.	.	PASS	Atlas-SNP
HNRNPA2B1	3181	hgsc.bcm.edu	hg19	7	26235509	26235509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	HNRNPA2B1	NM_031243	exon8	c.G715A	p.G239R	CAAATCCACGTCC	.	74.0	33.0	99.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	hg19	7	141731533	141731533	+	Silent	SNP	T	T	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	MGAM	NM_004668	exon13	c.T1524G	p.V508V	TGCTGTTTGGTGG	.	149.0	70.0	109.0	0.0	.	767	.	.	.	none	.	.	PASS	Atlas-SNP
TAS2R41	259287	hgsc.bcm.edu	hg19	7	143175477	143175477	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	TAS2R41	NM_176883	exon1	c.A512T	p.K171M	CCTACAAGTGGAA	.	50.0	20.0	76.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
DENND4C	55667	hgsc.bcm.edu	hg19	9	19316719	19316719	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	DENND4C	NM_017925	exon12	c.A1689T	p.Q563H	AATTCAAGAGGCA	.	212.0	95.0	237.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
DENND1A	57706	hgsc.bcm.edu	hg19	9	126214605	126214605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	DENND1A	NM_024820	exon17	c.A1249G	p.N417D	CAGTATTCAGAAT	.	79.0	5.0	112.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	16943441	16943441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	CUBN	NM_001081	exon52	c.A8080G	p.I2694V	CACCTATCTGTAT	.	92.0	53.0	88.0	0.0	.	515	.	.	.	none	.	.	PASS	Atlas-SNP
NRG3	10718	hgsc.bcm.edu	hg19	10	83635770	83635770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	NRG3	NM_001165972	exon1	c.C674A	p.P225H	CCTGGCCTACTGC	.	58.0	28.0	77.0	0.0	.	301	.	.	.	none	.	.	PASS	Atlas-SNP
EPS8L2	64787	hgsc.bcm.edu	hg19	11	723296	723296	+	Nonsense_Mutation	SNP	C	C	A	rs142895363	bycluster;by1000genomes;alternate_allele	TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	EPS8L2	NM_022772	exon15	c.C1397A	p.S466X	CCACTTCAGAGCC	.	134.0	59.0	184.0	0.0	.	42	.	.	.	alt	C|0.999;T|0.001	.	PASS	Atlas-SNP
TRIM51	84767	hgsc.bcm.edu	hg19	11	55658774	55658774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	.	NM_032681	exon7	c.A1025G	p.Y342C	AATATTATTGGGA	.	125.0	56.0	80.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
B3GNT1	11041	hgsc.bcm.edu	hg19	11	66114291	66114291	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	B3GNT1	NM_006876	exon1	c.A726T	p.E242D	CAGCATTTCCCGC	.	169.0	82.0	240.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
PICALM	8301	hgsc.bcm.edu	hg19	11	85722090	85722090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	PICALM	NM_007166	exon7	c.T748C	p.F250L	TGAGGAACTCTGA	.	30.0	18.0	18.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92590392	92590392	+	Missense_Mutation	SNP	C	C	T	rs368909373		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	FAT3	NM_001008781	exon19	c.C11378T	p.P3793L	TGTGTCCGGGGTC	.	113.0	51.0	168.0	0.0	.	1822	.	.	.	weak	.	.	PASS	Atlas-SNP
PPFIBP1	8496	hgsc.bcm.edu	hg19	12	27787953	27787953	+	Silent	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	PPFIBP1	NM_003622	exon4	c.T175C	p.L59L	GGATTGTTAGAGA	.	103.0	46.0	112.0	0.0	.	153	.	.	.	none	.	.	PASS	Atlas-SNP
ARF3	377	hgsc.bcm.edu	hg19	12	49333834	49333834	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ARF3	NM_001659	exon3	c.G205C	p.G69R	GGCCACCCACATC	.	101.0	41.0	182.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
MBD6	114785	hgsc.bcm.edu	hg19	12	57920964	57920964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	MBD6	NM_052897	exon7	c.C2036T	p.A679V	ATTCTGCGCTGCT	.	18.0	13.0	35.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	hg19	12	116429670	116429670	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	MED13L	NM_015335	exon17	c.C3089G	p.A1030G	TTGCTGGCTGGGG	.	77.0	35.0	79.0	0.0	.	193	.	.	.	none	.	.	PASS	Atlas-SNP
STARD13	90627	hgsc.bcm.edu	hg19	13	33700266	33700266	+	Missense_Mutation	SNP	T	T	G	rs143789881	byfrequency;alternate_allele	TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	STARD13	NM_178006	exon7	c.A2034C	p.Q678H	AATACTTTGAGGC	.	185.0	91.0	210.0	0.0	.	100	.	.	.	alt	T|1.000;C|0.000	.	PASS	Atlas-SNP
SLC38A6	145389	hgsc.bcm.edu	hg19	14	61449295	61449295	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SLC38A6	NM_153811	exon2	c.A175C	p.M59L	GCCATCATGGGAA	.	102.0	48.0	110.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
ADAD2	161931	hgsc.bcm.edu	hg19	16	84228944	84228944	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ADAD2	NM_139174	exon6	c.T1022A	p.L341Q	ACAAGCTGGTGGC	.	28.0	11.0	59.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
SREBF1	6720	hgsc.bcm.edu	hg19	17	17721579	17721579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SREBF1	NM_001005291	exon7	c.A1268G	p.K423R	CTGCTTTTGTGGA	.	102.0	27.0	124.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
ERBB2	2064	hgsc.bcm.edu	hg19	17	37880219	37880219	+	Silent	SNP	T	T	C	rs121913469	bycluster;alternate_allele	TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	ERBB2,NS,carcinoma,-1,1	ERBB2	NM_004448	exon19	c.T2263C	p.L755L	AAAGTGTTGAGGG	.	74.0	48.0	89.0	0.0	.	429	.	.	.	alt	.	.	PASS	Atlas-SNP
ERBB2	2064	hgsc.bcm.edu	hg19	17	37880220	37880220	+	Missense_Mutation	SNP	T	T	C	rs121913470		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	ERBB2,NS,carcinoma,0,20	ERBB2	NM_004448	exon19	c.T2264C	p.L755S	AAGTGTTGAGGGA	.	71.0	45.0	88.0	0.0	.	429	.	.	.	weak	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9075468	9075468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	MUC16_ENST00000397910,colon,carcinoma,0,2	MUC16	NM_024690	exon3	c.C11978G	p.S3993C	GACATAGAAACTA	.	46.0	2.0	43.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
DMPK	1760	hgsc.bcm.edu	hg19	19	46281110	46281110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	DMPK	NM_001081563	exon6	c.G727A	p.G243S	GGGTGCCCACAGC	.	98.0	43.0	166.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	hg19	19	55494859	55494859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	NLRP2	NM_017852	exon6	c.C1793T	p.T598M	ATTCAACGGTGAC	.	84.0	39.0	95.0	0.0	.	161	.	.	.	none	.	.	PASS	Atlas-SNP
SNX5	27131	hgsc.bcm.edu	hg19	20	17933351	17933351	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SNX5	NM_014426	exon5	c.G393C	p.E131D	GAGATACTCACTG	.	33.0	15.0	37.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
NUDT10	170685	hgsc.bcm.edu	hg19	X	51075840	51075840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	NUDT10	NM_153183	exon2	c.C23T	p.T8I	ACCAGACACGGAC	.	68.0	12.0	94.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
NUDT11	55190	hgsc.bcm.edu	hg19	X	51239274	51239274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	NUDT11	NM_018159	exon1	c.C23T	p.T8M	GTCCGCGTCTGGT	.	26.0	12.0	41.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
RGAG4	340526	hgsc.bcm.edu	hg19	X	71351213	71351213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	RGAG4	NM_001024455	exon1	c.A178G	p.I60V	GCACTATGGGTAC	.	118.0	53.0	190.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
HOMER2	9455	hgsc.bcm.edu	hg19	15	83518619	83518620	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	HOMER2	NM_199330	exon9	c.913_914insA	p.V305fs	.	.	112.0	53.0	152.0	0.0	.	63	.	0.473214	0	none	.	.	PASS	Atlas-INDEL
WFDC10A	140832	hgsc.bcm.edu	hg19	20	44258534	44258534	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	WFDC10A	NM_080753	exon1	c.81delG	p.K27fs	.	.	49.0	20.0	53.0	0.0	.	7	.	0.408163	0	none	.	.	PASS	Atlas-INDEL
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24802526	24802526	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	TNRC6A	NM_014494	exon6	c.2562delT	p.S854fs	.	.	67.0	28.0	73.0	0.0	.	171	.	0.41791	0	none	.	.	PASS	Atlas-INDEL
SAMD9	54809	hgsc.bcm.edu	hg19	7	92734994	92734994	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SAMD9	NM_001193307	exon2	c.418delG	p.V140fs	.	.	113.0	50.0	102.0	0.0	.	239	.	0.442478	0	none	.	.	PASS	Atlas-INDEL
LRRC14	9684	hgsc.bcm.edu	hg19	8	145746824	145746825	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	LRRC14	NM_001272036	exon5	c.1443_1444del	p.481_482del	.	.	47.0	23.0	88.0	0.0	.	25	.	0.489362	0	none	.	.	PASS	Atlas-INDEL
COL11A1	1301	hgsc.bcm.edu	hg19	1	103400626	103400626	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	COL11A1	NM_080629	exon45	c.3519delT	p.P1173fs	.	.	48.0	18.0	43.0	0.0	.	972	.	0.375	0	none	.	.	PASS	Atlas-INDEL
