Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
KIAA1751	85452	hgsc.bcm.edu	hg19	1	1887063	1887063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	KIAA1751,NS,carcinoma,0,1	KIAA1751	NM_001080484	exon18	c.G2243A	p.G748E	TCAGCCCCCTGGA	.	149.0	38.0	149.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
CAMTA1	23261	hgsc.bcm.edu	hg19	1	7721912	7721912	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	CAMTA1	NM_015215	exon8	c.G791C	p.C264S	GCCTCTGCACCGG	.	23.0	9.0	34.0	0.0	.	226	.	.	.	none	.	.	PASS	Atlas-SNP
RERE	473	hgsc.bcm.edu	hg19	1	8424145	8424145	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RERE	NM_012102	exon16	c.A1711T	p.S571C	TCATGCTATGCTT	.	100.0	42.0	84.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
HMGCL	3155	hgsc.bcm.edu	hg19	1	24147039	24147039	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	HMGCL	NM_000191	exon2	c.T105G	p.I35M	TTCCACAATTTTC	.	149.0	53.0	133.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
PHACTR4	65979	hgsc.bcm.edu	hg19	1	28785697	28785697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PHACTR4	NM_023923	exon2	c.T148C	p.F50L	TCAGGCTTTGGCA	.	84.0	28.0	93.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
PUM1	9698	hgsc.bcm.edu	hg19	1	31406096	31406096	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PUM1	NM_001020658	exon22	c.T3529A	p.L1177I	GCCCTAAGTCAAC	.	162.0	63.0	178.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
RBM15	64783	hgsc.bcm.edu	hg19	1	110883658	110883658	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RBM15	NM_022768	exon1	c.C1631G	p.T544S	CCTTGACTCATTA	.	143.0	57.0	107.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY10	55811	hgsc.bcm.edu	hg19	1	167870956	167870956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ADCY10	NM_018417	exon5	c.A380T	p.H127L	AATCCATGGATCT	.	237.0	83.0	198.0	0.0	.	175	.	.	.	none	.	.	PASS	Atlas-SNP
IKBKE	9641	hgsc.bcm.edu	hg19	1	206651658	206651658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	IKBKE	NM_001193322	exon9	c.A968G	p.H323R	TGCACCACATCTA	.	241.0	66.0	247.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
SYT14	255928	hgsc.bcm.edu	hg19	1	210267875	210267875	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SYT14	NM_001146264	exon6	c.T786C	p.S262S	AGAAAGTTTTCAT	.	66.0	26.0	71.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
SLC30A6	55676	hgsc.bcm.edu	hg19	2	32422810	32422810	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SLC30A6	NM_001193513	exon11	c.T700A	p.F234I	AGTATCTTCCTTC	.	151.0	58.0	144.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
MTIF2	4528	hgsc.bcm.edu	hg19	2	55470636	55470636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MTIF2	NM_002453	exon12	c.T1480C	p.F494L	CTAAAAACCGTAG	.	145.0	48.0	145.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61493234	61493234	+	Silent	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	USP34	NM_014709	exon42	c.G5502A	p.K1834K	TTTGCACTTTGGC	.	82.0	33.0	67.0	0.0	.	334	.	.	.	none	.	.	PASS	Atlas-SNP
RAB3GAP1	22930	hgsc.bcm.edu	hg19	2	135891507	135891507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	RAB3GAP1,NS,carcinoma,0,1	RAB3GAP1	NM_001172435	exon15	c.A1403G	p.N468S	TGATCAATTTTTA	.	128.0	46.0	157.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
ABTB1	80325	hgsc.bcm.edu	hg19	3	127396051	127396051	+	Silent	SNP	C	C	A	rs368024563	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ABTB1	NM_172027	exon8	c.C684A	p.I228I	GACCATCGAGCCC	.	19.0	8.0	23.0	0.0	.	36	.	.	.	alt	.	.	PASS	Atlas-SNP
LSG1	55341	hgsc.bcm.edu	hg19	3	194379786	194379786	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LSG1	NM_018385	exon7	c.A659C	p.E220A	CGCTGCTCAGCAG	.	265.0	96.0	263.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
TFRC	7037	hgsc.bcm.edu	hg19	3	195782165	195782165	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TFRC	NM_001128148	exon17	c.A1685T	p.D562V	GGATAATCTGTGT	.	68.0	26.0	77.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
TFRC	7037	hgsc.bcm.edu	hg19	3	195782166	195782166	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TFRC	NM_001128148	exon17	c.G1684C	p.D562H	GATAATCTGTGTC	.	67.0	25.0	76.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
CEP135	9662	hgsc.bcm.edu	hg19	4	56874494	56874494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	CEP135	NM_025009	exon18	c.A2282G	p.E761G	TATAGGAAAAAGC	.	84.0	5.0	91.0	0.0	.	115	.	.	.	none	.	.	PASS	Atlas-SNP
RCHY1	25898	hgsc.bcm.edu	hg19	4	76415883	76415883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RCHY1	NM_015436	exon8	c.T565G	p.S189A	AAGCAGAGTGCAT	.	80.0	26.0	62.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
BMP2K	55589	hgsc.bcm.edu	hg19	4	79786783	79786783	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	BMP2K	NM_017593	exon10	c.T1140C	p.T380T	TGCTACTACTGCC	.	104.0	44.0	104.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	hg19	4	104081805	104081805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	CENPE	NM_001813	exon21	c.G2263A	p.E755K	CTACTTCAGAAGG	.	85.0	39.0	90.0	0.0	.	253	.	.	.	none	.	.	PASS	Atlas-SNP
LRBA	987	hgsc.bcm.edu	hg19	4	151821345	151821345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LRBA	NM_006726	exon14	c.C1780A	p.L594M	TGGACAGATAAGT	.	68.0	24.0	77.0	0.0	.	253	.	.	.	none	.	.	PASS	Atlas-SNP
WWC2	80014	hgsc.bcm.edu	hg19	4	184182067	184182067	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	WWC2	NM_024949	exon11	c.T1291A	p.S431T	AGCCTCTCTGCCA	.	36.0	18.0	27.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5461992	5461992	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	KIAA0947	NM_015325	exon13	c.A2545T	p.T849S	TTCAAGACCACTG	.	96.0	41.0	109.0	0.0	.	301	.	.	.	none	.	.	PASS	Atlas-SNP
ITGA1	3672	hgsc.bcm.edu	hg19	5	52211309	52211309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ITGA1	NM_181501	exon15	c.G1873T	p.G625W	TCAGGTGGGGATG	.	157.0	62.0	171.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
LHFPL2	10184	hgsc.bcm.edu	hg19	5	77784725	77784725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LHFPL2	NM_005779	exon5	c.C682T	p.L228F	ACTAAAGGAGGCA	.	124.0	52.0	135.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHB14	56122	hgsc.bcm.edu	hg19	5	140605207	140605207	+	Silent	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PCDHB14	NM_018934	exon1	c.G2130C	p.A710A	CGTGGCGGTGCGG	.	333.0	109.0	391.0	0.0	.	132	.	.	.	none	.	.	PASS	Atlas-SNP
SLC22A7	10864	hgsc.bcm.edu	hg19	6	43267444	43267444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SLC22A7	NM_153320	exon3	c.T583C	p.Y195H	GTCAGCTATGTAA	.	178.0	68.0	166.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
EPHA7	2045	hgsc.bcm.edu	hg19	6	93969151	93969151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	EPHA7	NM_004440	exon10	c.G1845T	p.E615D	TGGGTCCTCATAG	.	168.0	72.0	172.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
OSTM1	28962	hgsc.bcm.edu	hg19	6	108395713	108395713	+	Missense_Mutation	SNP	G	G	C	rs201176284	bycluster	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	OSTM1	NM_014028	exon1	c.C143G	p.S48W	TGCTCCGACAGGA	.	12.0	4.0	3.0	0.0	.	22	.	.	.	weak	.	.	PASS	Atlas-SNP
MAP3K4	4216	hgsc.bcm.edu	hg19	6	161470014	161470014	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	MAP3K4_ENST00000392142,NS,carcinoma,0,2	MAP3K4	NM_006724	exon3	c.C710A	p.S237X	TTACCTCAGTCTC	.	54.0	23.0	49.0	0.0	.	364	.	.	.	none	.	.	PASS	Atlas-SNP
HEATR2	54919	hgsc.bcm.edu	hg19	7	803456	803456	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	HEATR2	NM_017802	exon8	c.T1628G	p.M543R	AGACGATGGACTC	.	261.0	44.0	137.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47870900	47870900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PKD1L1	NM_138295	exon42	c.C6388G	p.Q2130E	AAGGCTGAAGGGC	.	211.0	48.0	105.0	0.0	.	328	.	.	.	none	.	.	PASS	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	hg19	7	94057039	94057039	+	Missense_Mutation	SNP	G	G	T	rs145541630	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	COL1A2	NM_000089	exon49	c.G3368T	p.R1123L	AGCCTCGCTCAGC	.	261.0	53.0	113.0	0.0	.	240	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
GPR37	2861	hgsc.bcm.edu	hg19	7	124404923	124404923	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	GPR37	NM_005302	exon1	c.C108G	p.N36K	AGTTTCGTTTCTG	.	86.0	61.0	46.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151962168	151962168	+	Missense_Mutation	SNP	C	C	G	rs78352960	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	MLL3_ENST00000355193,extremity,malignant_melanoma,0,4	MLL3	NM_170606	exon8	c.G1139C	p.R380P	CCTGCACGTTTTA	.	901.0	146.0	771.0	0.0	.	1564	.	.	.	alt	C|0.500;A|0.500	.	PASS	Atlas-SNP
SETX	23064	hgsc.bcm.edu	hg19	9	135156906	135156906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SETX	NM_015046	exon20	c.A6602G	p.K2201R	ATGAGCTTATTGC	.	118.0	53.0	130.0	0.0	.	234	.	.	.	none	.	.	PASS	Atlas-SNP
SUV39H2	79723	hgsc.bcm.edu	hg19	10	14939337	14939337	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SUV39H2	NM_001193424	exon3	c.A670T	p.T224S	CCTGGTACTCCCA	.	132.0	47.0	138.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
SUV39H2	79723	hgsc.bcm.edu	hg19	10	14939338	14939338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SUV39H2	NM_001193424	exon3	c.C671T	p.T224I	CTGGTACTCCCAT	.	131.0	49.0	138.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24835172	24835172	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	KIAA1217	NM_019590	exon21	c.T5751C	p.H1917H	CATCCATACTCCC	.	99.0	51.0	111.0	0.0	.	235	.	.	.	none	.	.	PASS	Atlas-SNP
ARMC4	55130	hgsc.bcm.edu	hg19	10	28270470	28270470	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ARMC4	NM_018076	exon7	c.A861G	p.K287K	TGAACCTTTTCTC	.	127.0	8.0	170.0	0.0	.	177	.	.	.	none	.	.	PASS	Atlas-SNP
CUL2	8453	hgsc.bcm.edu	hg19	10	35324145	35324145	+	Silent	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	CUL2	NM_001198778	exon10	c.C1014A	p.I338I	ATCATGGATGTGG	.	63.0	21.0	59.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
ALOX5	240	hgsc.bcm.edu	hg19	10	45869784	45869784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ALOX5	NM_000698	exon1	c.C57A	p.D19E	CACTGACGACTAC	.	12.0	6.0	10.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	hg19	10	87407050	87407050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	GRID1	NM_017551	exon13	c.A2102G	p.Q701R	CTGTCCTGCTCCA	.	427.0	157.0	418.0	0.0	.	204	.	.	.	none	.	.	PASS	Atlas-SNP
NRAP	4892	hgsc.bcm.edu	hg19	10	115411657	115411657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	NRAP	NM_001261463	exon7	c.A580G	p.K194E	CTCTCTTATACTC	.	71.0	21.0	66.0	0.0	.	208	.	.	.	none	.	.	PASS	Atlas-SNP
IFITM1	8519	hgsc.bcm.edu	hg19	11	315058	315058	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	IFITM1,NS,carcinoma,0,1	IFITM1	NM_003641	exon2	c.C323G	p.S108C	TCGGCTCTGTGAC	.	122.0	35.0	114.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
SIGIRR	59307	hgsc.bcm.edu	hg19	11	407548	407548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SIGIRR	NM_001135053	exon6	c.T502C	p.Y168H	AGACGTAGGCGTC	.	40.0	10.0	21.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
ALKBH3	221120	hgsc.bcm.edu	hg19	11	43905565	43905565	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ALKBH3	NM_139178	exon4	c.T216C	p.I72I	AGTGATTGAGTAA	.	214.0	83.0	233.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
PC	5091	hgsc.bcm.edu	hg19	11	66620716	66620716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PC	NM_000920	exon12	c.T1507A	p.Y503N	CGAGGTAGTGCAA	.	88.0	28.0	104.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
PHLDB1	23187	hgsc.bcm.edu	hg19	11	118513026	118513026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PHLDB1	NM_001144758	exon13	c.A2791T	p.M931L	GAGCTGATGGCCG	.	155.0	53.0	151.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
LRP6	4040	hgsc.bcm.edu	hg19	12	12334248	12334248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LRP6	NM_002336	exon6	c.G1102A	p.D368N	CAGGATCGTAATC	.	295.0	162.0	171.0	0.0	.	170	.	.	.	none	.	.	PASS	Atlas-SNP
PPFIA2	8499	hgsc.bcm.edu	hg19	12	81671123	81671123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PPFIA2	NM_001220473	exon27	c.C3283T	p.R1095W	CTTCCCGTCTTCT	.	20.0	12.0	15.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
RASSF9	9182	hgsc.bcm.edu	hg19	12	86199543	86199543	+	Missense_Mutation	SNP	T	T	C	rs367564230	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RASSF9	NM_005447	exon2	c.A245G	p.K82R	CTCCACTTCTCTA	.	216.0	53.0	137.0	0.0	.	100	.	.	.	alt	.	.	PASS	Atlas-SNP
TECPR2	9895	hgsc.bcm.edu	hg19	14	102906785	102906785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TECPR2	NM_001172631	exon11	c.G2591T	p.W864L	TTCTCTGGAAGAT	.	187.0	64.0	179.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
TECPR2	9895	hgsc.bcm.edu	hg19	14	102906786	102906786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TECPR2	NM_001172631	exon11	c.G2592T	p.W864C	TCTCTGGAAGATT	.	183.0	63.0	177.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
TRPM1	4308	hgsc.bcm.edu	hg19	15	31362391	31362391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TRPM1	NM_001252020	exon3	c.C173A	p.P58H	GGCAGAGGGGGGA	.	382.0	147.0	370.0	1.0	.	183	.	.	.	none	.	.	PASS	Atlas-SNP
ANKDD1A	348094	hgsc.bcm.edu	hg19	15	65223120	65223120	+	Splice_Site	SNP	T	T	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ANKDD1A	NM_182703	exon7	c.669+2T>G	.	ATGCGGTGAGTCA	.	33.0	14.0	24.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	hg19	15	65684505	65684505	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	IGDCC4	NM_020962	exon11	c.A2089T	p.K697X	CTTTCTTCTTGAG	.	112.0	44.0	91.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
MAP2K5	5607	hgsc.bcm.edu	hg19	15	67985904	67985904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MAP2K5	NM_145160	exon15	c.G970T	p.A324S	TATATGGCGGTAA	.	95.0	30.0	86.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
RASGRF1	5923	hgsc.bcm.edu	hg19	15	79254568	79254568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RASGRF1	NM_002891	exon28	c.A3740G	p.Y1247C	AGTAAATATTGCG	.	13.0	5.0	11.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
MYH8	4626	hgsc.bcm.edu	hg19	17	10312636	10312636	+	Silent	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MYH8	NM_002472	exon16	c.T1857A	p.T619T	GGCTAGAGTCTTC	.	147.0	77.0	124.0	0.0	.	346	.	.	.	none	.	.	PASS	Atlas-SNP
C19orf21	126353	hgsc.bcm.edu	hg19	19	758211	758211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	C19orf21	NM_173481	exon2	c.C1265A	p.P422H	TCCCACCTGATGC	.	47.0	25.0	32.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
TUBB4A	10382	hgsc.bcm.edu	hg19	19	6501326	6501326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	.	NM_006087	exon3	c.G249T	p.Q83H	AAAGATCTGACCG	.	53.0	27.0	65.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF557	79230	hgsc.bcm.edu	hg19	19	7083599	7083599	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ZNF557	NM_001044387	exon8	c.T1137C	p.S379S	GTGCAGTGATTGT	.	65.0	16.0	76.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11135092	11135092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SMARCA4	NM_003072	exon21	c.A3059G	p.D1020G	TGACTGATGGCTC	.	66.0	21.0	77.0	0.0	.	502	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF443	10224	hgsc.bcm.edu	hg19	19	12541116	12541116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ZNF443	NM_005815	exon4	c.G1870A	p.A624T	CAAATGCTTTCCC	.	218.0	64.0	183.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
RHPN2	85415	hgsc.bcm.edu	hg19	19	33493859	33493859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	RHPN2,colon,carcinoma,0,1	RHPN2	NM_033103	exon8	c.G808A	p.D270N	TCATGTCGTAACT	.	83.0	4.0	62.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
DNMT3B	1789	hgsc.bcm.edu	hg19	20	31374365	31374365	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	DNMT3B_ENST00000201963,NS,carcinoma,0,2	DNMT3B	NM_175850	exon5	c.C400G	p.R134G	TCCCCACGTTCCA	.	123.0	54.0	114.0	0.0	.	196	.	.	.	none	.	.	PASS	Atlas-SNP
MMP24	10893	hgsc.bcm.edu	hg19	20	33851627	33851627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MMP24	NM_006690	exon5	c.T851C	p.L284P	ATGAGCTGGGCCA	.	23.0	10.0	16.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
FAM217B	63939	hgsc.bcm.edu	hg19	20	58519969	58519969	+	Missense_Mutation	SNP	G	G	C	rs377074437	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	.	NM_022106	exon4	c.G971C	p.R324P	ACATTCGAGTTCC	.	98.0	4.0	76.0	0.0	.	.	.	.	.	alt	.	.	PASS	Atlas-SNP
KRTAP10-12	386685	hgsc.bcm.edu	hg19	21	46117131	46117131	+	Silent	SNP	C	C	T	rs372249758		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	KRTAP10-12	NM_198699	exon1	c.C15T	p.S5S	CTGCTCCAGCGAC	.	188.0	70.0	217.0	0.0	.	21	.	.	.	weak	.	.	PASS	Atlas-SNP
C21orf58	54058	hgsc.bcm.edu	hg19	21	47731374	47731374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	C21orf58	NM_058180	exon6	c.G717T	p.K239N	ACCTTCCTTAATA	.	19.0	9.0	22.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
ZNRF3	84133	hgsc.bcm.edu	hg19	22	29445939	29445939	+	Silent	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ZNRF3	NM_001206998	exon8	c.C1770G	p.L590L	CTCCCTCAGCAGC	.	235.0	81.0	220.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
SH3KBP1	30011	hgsc.bcm.edu	hg19	X	19626146	19626146	+	Silent	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SH3KBP1	NM_031892	exon9	c.C915A	p.G305G	CCACCAGCCTACG	.	50.0	40.0	38.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
DCAF12L1	139170	hgsc.bcm.edu	hg19	X	125685498	125685498	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	DCAF12L1	NM_178470	exon1	c.T1094G	p.V365G	GTGCCCACAGTGA	.	66.0	55.0	48.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
SRRT	51593	hgsc.bcm.edu	hg19	7	100485469	100485473	+	Frame_Shift_Del	DEL	GCCCC	GCCCC	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	GCCCC	GCCCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SRRT	NM_001128853	exon17	c.2314_2318del	p.772_773del	.	.	224.0	18.0	107.0	0.0	.	108	.	0.0803571	0	none	.	.	PASS	Atlas-INDEL
SIGLEC11	114132	hgsc.bcm.edu	hg19	19	50463980	50463980	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SIGLEC11	NM_001135163	exon2	c.290delT	p.M97fs	.	.	124.0	11.0	116.0	0.0	.	70	.	0.0887097	0	none	.	.	PASS	Atlas-INDEL
RFPL3	10738	hgsc.bcm.edu	hg19	22	32754385	32754386	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RFPL3	NM_001098535	exon1	c.326_327del	p.109_109del	.	.	184.0	72.0	174.0	0.0	.	91	.	0.391304	0	none	.	.	PASS	Atlas-INDEL
AIM1	202	hgsc.bcm.edu	hg19	6	106967843	106967843	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	AIM1	NM_001624	exon2	c.1535delA	p.N512fs	.	.	150.0	60.0	120.0	0.0	.	161	.	0.4	0	none	.	.	PASS	Atlas-INDEL
ZNF814	730051	hgsc.bcm.edu	hg19	19	58386399	58386399	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ZNF814	NM_001144989	exon3	c.360delC	p.H120fs	.	.	118.0	16.0	109.0	0.0	.	93	.	0.135593	0	none	.	.	PASS	Atlas-INDEL
SGK2	10110	hgsc.bcm.edu	hg19	20	42203603	42203603	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SGK2	NM_016276	exon9	c.831delG	p.W277fs	.	.	48.0	21.0	52.0	0.0	.	50	.	0.4375	0	none	.	.	PASS	Atlas-INDEL
IL36RN	26525	hgsc.bcm.edu	hg19	2	113820191	113820191	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	IL36RN	NM_173170	exon5	c.404delA	p.Q135fs	.	.	71.0	18.0	101.0	0.0	.	15	.	0.253521	0	none	.	.	PASS	Atlas-INDEL
ADTRP	84830	hgsc.bcm.edu	hg19	6	11723657	11723657	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.,1	ADTRP	NM_001143948	exon6	c.638delC	p.A213fs	.	.	259.0	92.0	246.0	0.0	.	3	.	0.355212	0	none	.	.	PASS	Atlas-INDEL
PC	5091	hgsc.bcm.edu	hg19	11	66617140	66617141	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PC	NM_000920	exon20	c.3089_3090insC	p.L1030fs	.	.	77.0	18.0	77.0	0.0	.	116	.	0.233766	0	none	.	.	PASS	Atlas-INDEL
ATP2A2	488	hgsc.bcm.edu	hg19	12	110765478	110765478	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ATP2A2	NM_170665	exon8	c.750delG	p.Q250fs	.	.	346.0	90.0	237.0	0.0	.	78	.	0.260116	0	none	.	.	PASS	Atlas-INDEL
EP300	2033	hgsc.bcm.edu	hg19	22	41574164	41574176	+	Frame_Shift_Del	DEL	CACAGCAGCAACT	CACAGCAGCAACT	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	CACAGCAGCAACT	CACAGCAGCAACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	EP300	NM_001429	exon31	c.6448_6460del	p.2150_2154del	.	.	106.0	42.0	120.0	0.0	.	367	.	0.396226	0	none	.	.	PASS	Atlas-INDEL
SOBP	55084	hgsc.bcm.edu	hg19	6	107827597	107827597	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SOBP	NM_018013	exon3	c.386delC	p.P129fs	.	.	300.0	100.0	256.0	0.0	.	53	.	0.333333	0	none	.	.	PASS	Atlas-INDEL
