Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TMEM52	339456	hgsc.bcm.edu	hg19	1	1850654	1850654	+	Silent	SNP	G	G	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	TMEM52,NS,carcinoma,0,1	TMEM52	NM_178545	exon1	c.C51G	p.L17L	CGGCAGGAGCGGC	.	7.0	2.0	0.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA2013	90231	hgsc.bcm.edu	hg19	1	11986231	11986231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	KIAA2013	NM_138346	exon1	c.C64T	p.L22F	AGAGGAGGCGGCG	.	4.0	4.0	0.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
UBXN11	91544	hgsc.bcm.edu	hg19	1	26608865	26608865	+	Silent	SNP	A	A	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	UBXN11	NM_183008	exon16	c.T1488C	p.G496G	ACCGGGACCGGGA	.	32.0	18.0	21.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
ECHDC2	55268	hgsc.bcm.edu	hg19	1	53362195	53362195	+	Silent	SNP	T	T	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ECHDC2	NM_001198961	exon10	c.A876G	p.K292K	GGGTCATTTGCCA	.	49.0	13.0	75.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216262462	216262462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	USH2A	NM_206933	exon23	c.C4778A	p.T1593N	GTTGTAGTTACTT	.	52.0	18.0	74.0	0.0	.	1168	.	.	.	none	.	.	PASS	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237730023	237730023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	RYR2,colon,carcinoma,0,1	RYR2	NM_001035	exon28	c.C3371G	p.P1124R	GTCAACCGGATCA	.	185.0	48.0	152.0	0.0	.	1273	.	.	.	none	.	.	PASS	Atlas-SNP
OXER1	165140	hgsc.bcm.edu	hg19	2	42990999	42990999	+	Silent	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	OXER1	NM_148962	exon1	c.G321T	p.L107L	CCCCACCAGGCCC	.	100.0	34.0	100.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
OSBPL11	114885	hgsc.bcm.edu	hg19	3	125298795	125298795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	OSBPL11	NM_022776	exon3	c.T323A	p.L108H	CCTGCAAGCTGCA	.	130.0	25.0	101.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
NPHP3	27031	hgsc.bcm.edu	hg19	3	132418235	132418235	+	Silent	SNP	A	A	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	NPHP3	NM_153240	exon13	c.T1947A	p.I649I	AGAAACAATTACT	.	61.0	22.0	48.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
SLC22A3	6581	hgsc.bcm.edu	hg19	6	160769796	160769796	+	Silent	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	SLC22A3	NM_021977	exon1	c.C345T	p.A115A	ACTCGCCGCCTTC	.	23.0	11.0	0.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	75.0	10.0	58.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	hg19	7	5352626	5352626	+	Silent	SNP	A	A	T	rs180704395	by1000genomes;alternate_allele	TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	TNRC18_ENST00000430969,NS,malignant_melanoma,0,3	TNRC18	NM_001080495	exon27	c.T7896A	p.S2632S	GGAGGAAGAGGAG	.	16.0	3.0	3.0	0.0	.	311	.	.	.	alt	A|0.966;G|0.034	.	PASS	Atlas-SNP
TAF6	6878	hgsc.bcm.edu	hg19	7	99707631	99707631	+	Silent	SNP	G	G	A	rs148894017		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	TAF6	NM_001190415	exon12	c.C1335T	p.D445D	AGGGCCGTCCAGC	.	155.0	37.0	124.0	0.0	.	55	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
AKNA	80709	hgsc.bcm.edu	hg19	9	117143567	117143567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	AKNA	NM_030767	exon2	c.G47T	p.G16V	CCCTTCCCCAGGC	.	83.0	25.0	38.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
GAD2	2572	hgsc.bcm.edu	hg19	10	26506915	26506915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	GAD2	NM_000818	exon3	c.C281T	p.A94V	TCCATGCAACAGG	.	195.0	54.0	77.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
KIF5B	3799	hgsc.bcm.edu	hg19	10	32326205	32326205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	KIF5B	NM_004521	exon8	c.G688T	p.V230F	AATCAACCAGATA	.	77.0	10.0	89.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	hg19	10	49983779	49983779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	WDFY4	NM_020945	exon15	c.C2791T	p.P931S	GGAATTCCCTCAT	.	92.0	30.0	93.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1093204	1093204	+	Missense_Mutation	SNP	C	C	A	rs56299570		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	MUC2_ENST00000441003,caecum,carcinoma,0,4	MUC2	NM_002457	exon30	c.C5023A	p.P1675T	CCAACCCCAACAG	.	55.0	5.0	70.0	1.0	.	614	.	.	.	weak	.	.	PASS	Atlas-SNP
STIM1	6786	hgsc.bcm.edu	hg19	11	4104179	4104179	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	STIM1	NM_003156	exon9	c.T1205G	p.L402R	CTTCCCTGGATGA	.	324.0	102.0	365.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
ALX1	8092	hgsc.bcm.edu	hg19	12	85674223	85674223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ALX1	NM_006982	exon1	c.C184T	p.H62Y	GAGCATCACGTGC	.	120.0	5.0	76.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	hg19	14	31576342	31576342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	HECTD1	NM_015382	exon38	c.C6736T	p.H2246Y	GGAAATGAAACAG	.	161.0	36.0	191.0	0.0	.	159	.	.	.	none	.	.	PASS	Atlas-SNP
KIF7	374654	hgsc.bcm.edu	hg19	15	90174782	90174782	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	KIF7	NM_198525	exon15	c.A3055C	p.K1019Q	GCTGCTTGAGCAG	.	100.0	32.0	69.0	0.0	.	130	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM72	493829	hgsc.bcm.edu	hg19	16	31226442	31226442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	TRIM72	NM_001008274	exon2	c.G383A	p.R128H	ACGCACGCCTCAA	.	31.0	19.0	0.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
ZDHHC7	55625	hgsc.bcm.edu	hg19	16	85010785	85010785	+	Silent	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ZDHHC7	NM_001145548	exon8	c.C777T	p.F259F	GCACAGGAAGATC	.	209.0	45.0	165.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF429	353088	hgsc.bcm.edu	hg19	19	21720704	21720704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	ZNF429,NS,malignant_melanoma,0,1	ZNF429	NM_001001415	exon4	c.A1849G	p.R617G	CATACTAGAGAGA	.	63.0	3.0	59.0	0.0	.	338	.	.	.	none	.	.	PASS	Atlas-SNP
DNMT3B	1789	hgsc.bcm.edu	hg19	20	31389169	31389169	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	DNMT3B	NM_006892	exon19	c.G2082C	p.W694C	CTTCTGGATGTTT	.	264.0	77.0	216.0	0.0	.	196	.	.	.	none	.	.	PASS	Atlas-SNP
L3MBTL1	26013	hgsc.bcm.edu	hg19	20	42162966	42162966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	L3MBTL1	NM_032107	exon15	c.G1576A	p.V526M	GAGGCTGTGGACC	.	101.0	25.0	79.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	hg19	21	37642372	37642372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	DOPEY2	NM_005128	exon27	c.C5549T	p.T1850I	AGCAAACCAGCTG	.	82.0	25.0	79.0	0.0	.	184	.	.	.	none	.	.	PASS	Atlas-SNP
ZBED4	9889	hgsc.bcm.edu	hg19	22	50279802	50279802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	ZBED4,NS,adenocarcinoma,0,1	ZBED4	NM_014838	exon2	c.C2492T	p.T831M	GCCATACGGTGAA	.	159.0	49.0	114.0	1.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
F12	2161	hgsc.bcm.edu	hg19	5	176833055	176833058	+	Frame_Shift_Del	DEL	AGTG	AGTG	-	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	AGTG	AGTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	F12	NM_000505	exon3	c.121_124del	p.41_42del	.	.	71.0	23.0	63.0	0.0	.	35	.	0.323944	0	none	.	.	PASS	Atlas-Indel,Pindel
