Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
SLC2A5	6518	hgsc.bcm.edu	hg19	1	9097752	9097752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SLC2A5	NM_003039	exon12	c.A1399G	p.T467A	TGAACGTCTTGGC	.	181.0	30.0	209.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
ALPL	249	hgsc.bcm.edu	hg19	1	21902288	21902288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ALPL	NM_000478	exon10	c.G1060A	p.E354K	GCGGTGGAGATGG	.	186.0	25.0	278.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
WASF2	10163	hgsc.bcm.edu	hg19	1	27739179	27739179	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	WASF2	NM_006990	exon7	c.T711C	p.C237C	TTCAACACAGCCA	.	128.0	22.0	147.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
TESK2	10420	hgsc.bcm.edu	hg19	1	45813333	45813333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TESK2	NM_007170	exon7	c.C656T	p.S219F	AATGGGGAACCCA	.	175.0	38.0	217.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM69	51249	hgsc.bcm.edu	hg19	1	46159260	46159260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TMEM69	NM_016486	exon3	c.A427G	p.I143V	GGTGGGATCAGAT	.	176.0	31.0	196.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
ZFYVE9	9372	hgsc.bcm.edu	hg19	1	52704507	52704507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZFYVE9	NM_007323	exon4	c.A1418G	p.Y473C	CAAATTATCTATC	.	176.0	32.0	173.0	0.0	.	131	.	.	.	none	.	.	PASS	Atlas-SNP
ZYG11B	79699	hgsc.bcm.edu	hg19	1	53262039	53262039	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZYG11B	NM_024646	exon7	c.T1410C	p.A470A	AGTTGCTATCATT	.	71.0	10.0	69.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
ODF2L	57489	hgsc.bcm.edu	hg19	1	86851227	86851227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ODF2L	NM_001184766	exon3	c.C160T	p.L54F	CCTTAAGTGTTGC	.	53.0	12.0	43.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP29	9411	hgsc.bcm.edu	hg19	1	94639942	94639942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ARHGAP29	NM_004815	exon23	c.T3269C	p.L1090P	GCAGTTAGGCTGT	.	341.0	56.0	428.0	0.0	.	132	.	.	.	none	.	.	PASS	Atlas-SNP
GSTM1	2944	hgsc.bcm.edu	hg19	1	110233169	110233169	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GSTM1	NM_000561	exon7	c.T550G	p.F184V	AAGGACTTCATCT	.	240.0	72.0	317.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
ATP1A2	477	hgsc.bcm.edu	hg19	1	160105252	160105252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ATP1A2	NM_000702	exon16	c.G2144A	p.G715E	GTGACGGGGTGAA	.	73.0	12.0	110.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
NME7	29922	hgsc.bcm.edu	hg19	1	169102046	169102046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	NME7	NM_013330	exon12	c.T1108C	p.F370L	TGAAGAAGTATTG	.	66.0	7.0	71.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
PPFIA4	8497	hgsc.bcm.edu	hg19	1	203036824	203036824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PPFIA4	NM_015053	exon13	c.A1534G	p.T512A	TGCAGAACCAGTC	.	67.0	8.0	94.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
SDE2	163859	hgsc.bcm.edu	hg19	1	226175877	226175877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	.	NM_152608	exon6	c.C854A	p.P285Q	GTCACCGGGATCT	.	236.0	10.0	311.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
GMPPA	29926	hgsc.bcm.edu	hg19	2	220370077	220370077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GMPPA	NM_205847	exon8	c.T748C	p.S250P	ATCAAGTCCGCAG	.	120.0	22.0	142.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
CAMK1	8536	hgsc.bcm.edu	hg19	3	9801228	9801228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CAMK1	NM_003656	exon10	c.A856G	p.I286V	GGTGGATATTCTT	.	204.0	42.0	250.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
GPD1L	23171	hgsc.bcm.edu	hg19	3	32169609	32169609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GPD1L	NM_015141	exon2	c.A89C	p.K30T	TCAAGAAACTTCA	.	49.0	9.0	50.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
NXPE3	91775	hgsc.bcm.edu	hg19	3	101540473	101540473	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	.	NM_145037	exon8	c.C1355G	p.P452R	CCTTCCCTTTGGA	.	64.0	11.0	85.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121260288	121260288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	POLQ	NM_199420	exon3	c.C382T	p.L128F	AAATAAGTAATTC	.	448.0	78.0	380.0	0.0	.	273	.	.	.	none	.	.	PASS	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142284995	142284995	+	Missense_Mutation	SNP	C	C	T	rs200407265	by1000genomes;alternate_allele	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ATR	NM_001184	exon3	c.G260A	p.S87N	CTTCCACTCACAT	.	111.0	23.0	98.0	0.0	.	285	.	.	.	alt	C|1.000;A|0.000	.	PASS	Atlas-SNP
LAMP3	27074	hgsc.bcm.edu	hg19	3	182870222	182870222	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LAMP3	NM_014398	exon3	c.C829A	p.R277R	ATTTTCGGGTGCC	.	415.0	17.0	384.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
N4BP2	55728	hgsc.bcm.edu	hg19	4	40122682	40122682	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	N4BP2	NM_018177	exon9	c.C2951G	p.P984R	GTGCACCAACTGT	.	58.0	9.0	70.0	0.0	.	166	.	.	.	none	.	.	PASS	Atlas-SNP
SCD5	79966	hgsc.bcm.edu	hg19	4	83557889	83557889	+	Silent	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SCD5	NM_001037582	exon4	c.C657G	p.S219S	GAAGTAGGAATTC	.	45.0	9.0	85.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0922	23240	hgsc.bcm.edu	hg19	4	154557454	154557454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	KIAA0922	NM_001131007	exon35	c.C4559T	p.P1520L	TTCAGCCCTACCT	.	208.0	24.0	230.0	0.0	.	214	.	.	.	none	.	.	PASS	Atlas-SNP
FNIP2	57600	hgsc.bcm.edu	hg19	4	159756556	159756556	+	Splice_Site	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FNIP2	NM_020840	exon7	c.656-1G>A	.	ATCTTAGCACACA	.	298.0	56.0	305.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
LIFR	3977	hgsc.bcm.edu	hg19	5	38489203	38489203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LIFR	NM_002310	exon16	c.C2312T	p.S771F	ATCTTAGATGTGT	.	109.0	26.0	96.0	0.0	.	348	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGC4	56098	hgsc.bcm.edu	hg19	5	140864817	140864817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PCDHGC4	NM_018928	exon1	c.A77G	p.Y26C	TGGGTTACGTTTG	.	86.0	15.0	117.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	hg19	6	29079815	29079815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	OR2J3	NM_001005216	exon1	c.A148G	p.I50V	ATCATCATCCTGT	.	269.0	53.0	337.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB22	9278	hgsc.bcm.edu	hg19	6	33284668	33284668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZBTB22	NM_001145338	exon2	c.G26A	p.S9N	GCCCCACTGGGAG	.	47.0	10.0	82.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	hg19	6	42559909	42559909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	UBR2	NM_001184801	exon3	c.C359G	p.T120S	ATCCAACTTGTGT	.	78.0	11.0	89.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
SLC35B2	347734	hgsc.bcm.edu	hg19	6	44222677	44222677	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SLC35B2	NM_178148	exon4	c.C1065G	p.I355M	GTAAAAGATGAAG	.	29.0	6.0	47.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
TPST1	8460	hgsc.bcm.edu	hg19	7	65705725	65705725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TPST1	NM_003596	exon2	c.C313A	p.P105T	GTCATTCCCCGAA	.	96.0	39.0	74.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
ELN	2006	hgsc.bcm.edu	hg19	7	73474279	73474279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ELN	NM_001081754	exon23	c.C1493T	p.P498L	TGGCTCCTGGAGT	.	376.0	128.0	408.0	1.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
DLD	1738	hgsc.bcm.edu	hg19	7	107542828	107542828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DLD	NM_000108	exon4	c.T257C	p.I86T	GTTGTATTCCTTC	.	97.0	31.0	75.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116417457	116417457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MET	NM_001127500	exon16	c.G3328A	p.V1110I	GGTTGTGTATATC	.	223.0	26.0	158.0	0.0	.	412	.	.	.	none	.	.	PASS	Atlas-SNP
STRIP2	57464	hgsc.bcm.edu	hg19	7	129120722	129120722	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	FAM40B,NS,carcinoma,0,1	.	NM_020704	exon19	c.C2041A	p.R681R	CATTCCCGGACCA	.	102.0	6.0	118.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MCPH1	79648	hgsc.bcm.edu	hg19	8	6302563	6302563	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MCPH1	NM_001172574	exon8	c.T1320C	p.A440A	CCCTGCTCAGTTG	.	120.0	18.0	117.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
ST18	9705	hgsc.bcm.edu	hg19	8	53092686	53092686	+	Silent	SNP	G	G	T	rs137908806	alternate_allele	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	ST18,NS,carcinoma,0,1	ST18	NM_014682	exon9	c.C273A	p.T91T	ACCTGCGGTAGAG	.	248.0	13.0	268.0	0.0	.	212	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	131921969	131921969	+	Missense_Mutation	SNP	G	G	C	rs368729916		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ADCY8	NM_001115	exon6	c.C1625G	p.S542C	CCTCCAGATTCGA	.	337.0	67.0	372.0	0.0	.	291	.	.	.	weak	.	.	PASS	Atlas-SNP
TEK	7010	hgsc.bcm.edu	hg19	9	27197591	27197591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TEK	NM_000459	exon12	c.A1903G	p.S635G	ACCCTTAGTGACA	.	38.0	8.0	44.0	0.0	.	250	.	.	.	none	.	.	PASS	Atlas-SNP
ZCCHC6	79670	hgsc.bcm.edu	hg19	9	88943326	88943326	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZCCHC6	NM_024617	exon11	c.G1537C	p.D513H	CACTGTCAGTATG	.	232.0	48.0	253.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
CRAT	1384	hgsc.bcm.edu	hg19	9	131864688	131864688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CRAT	NM_000755	exon5	c.C621A	p.H207Q	GTAGTTGTGTACC	.	162.0	42.0	232.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
IKZF5	64376	hgsc.bcm.edu	hg19	10	124755609	124755609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	IKZF5	NM_001271840	exon4	c.G217T	p.G73W	CAAACCCGTCTAC	.	136.0	8.0	157.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129902189	129902189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MKI67	NM_002417	exon13	c.G7915T	p.G2639C	CATCACCGCTTGC	.	161.0	8.0	212.0	0.0	.	363	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF143	7702	hgsc.bcm.edu	hg19	11	9519250	9519250	+	Silent	SNP	T	T	G	rs373920789		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF143	NM_003442	exon10	c.T870G	p.T290T	CAGAACTCATACA	.	56.0	8.0	69.0	0.0	.	38	.	.	.	weak	.	.	PASS	Atlas-SNP
GIF	2694	hgsc.bcm.edu	hg19	11	59610049	59610049	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	GIF,NS,adenocarcinoma,0,1	GIF	NM_005142	exon4	c.C378G	p.N126K	TTCAGCGTTGGGG	.	58.0	9.0	81.0	1.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
FADS1	3992	hgsc.bcm.edu	hg19	11	61578255	61578255	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FADS1	NM_013402	exon5	c.T883G	p.F295V	CAAAGAAGAAGGG	.	146.0	26.0	218.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
SLC22A8	9376	hgsc.bcm.edu	hg19	11	62760990	62760990	+	Missense_Mutation	SNP	C	C	A	rs374075913	alternate_allele	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SLC22A8	NM_001184732	exon10	c.G1435T	p.G479W	TGATCCCGTAGAT	.	130.0	8.0	137.0	0.0	.	60	.	.	.	alt	.	.	PASS	Atlas-SNP
STYK1	55359	hgsc.bcm.edu	hg19	12	10780290	10780290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	STYK1	NM_018423	exon7	c.C667G	p.L223V	CTGTGAGATCATA	.	77.0	24.0	57.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHA5	54477	hgsc.bcm.edu	hg19	12	19506893	19506893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PLEKHA5	NM_001256470	exon26	c.A3095G	p.Y1032C	CTTCCTATGTAAC	.	112.0	25.0	87.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
SLC38A4	55089	hgsc.bcm.edu	hg19	12	47178364	47178364	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SLC38A4	NM_001143824	exon6	c.A454T	p.I152F	CTCCAATTTTTCC	.	175.0	26.0	169.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
EIF4B	1975	hgsc.bcm.edu	hg19	12	53416313	53416313	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	EIF4B	NM_001417	exon6	c.G569C	p.R190P	GAAATCGGGATTC	.	114.0	16.0	105.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
RAB5B	5869	hgsc.bcm.edu	hg19	12	56385887	56385887	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RAB5B	NM_002868	exon6	c.A539T	p.K180M	CTAAGAAGTTGCC	.	105.0	35.0	86.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
BIVM-ERCC5	0	hgsc.bcm.edu	hg19	13	103492131	103492131	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	.	NM_001204425	exon9	c.C1428G	p.D476E	TCAGGACTCGGCA	.	164.0	30.0	153.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	hg19	15	90349567	90349567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ANPEP	NM_001150	exon2	c.A248G	p.D83G	TAGGAATCGGGTT	.	85.0	18.0	137.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
SV2B	9899	hgsc.bcm.edu	hg19	15	91769497	91769497	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SV2B	NM_014848	exon3	c.G4C	p.D2H	GGAATGGATGACT	.	44.0	12.0	47.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
RBBP6	5930	hgsc.bcm.edu	hg19	16	24582943	24582943	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RBBP6	NM_006910	exon18	c.G4556C	p.R1519T	AAGAGAGAGATTT	.	45.0	8.0	42.0	0.0	.	158	.	.	.	none	.	.	PASS	Atlas-SNP
RPGRIP1L	23322	hgsc.bcm.edu	hg19	16	53691402	53691402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RPGRIP1L	NM_001127897	exon13	c.T1544C	p.M515T	ATTAGCATGTTTC	.	89.0	17.0	57.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
CBX1	10951	hgsc.bcm.edu	hg19	17	46152378	46152378	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CBX1	NM_006807	exon4	c.C403T	p.L135L	TCATCAGGAACAT	.	268.0	62.0	273.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
MTMR4	9110	hgsc.bcm.edu	hg19	17	56572475	56572475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MTMR4	NM_004687	exon16	c.G3028A	p.D1010N	CATCATCCAAATA	.	214.0	58.0	205.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
CLTC	1213	hgsc.bcm.edu	hg19	17	57771125	57771125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CLTC	NM_004859	exon32	c.T4940C	p.V1647A	CCAGTGTTGCCGT	.	144.0	55.0	151.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
ACE	1636	hgsc.bcm.edu	hg19	17	61570904	61570904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ACE	NM_000789	exon20	c.G3020T	p.R1007M	CCTTGAGGGAGGG	.	87.0	18.0	86.0	0.0	.	187	.	.	.	none	.	.	PASS	Atlas-SNP
GRB2	2885	hgsc.bcm.edu	hg19	17	73316567	73316567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GRB2	NM_002086	exon6	c.G536T	p.R179L	TCTCCCCGGCGGA	.	223.0	10.0	266.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
DYM	54808	hgsc.bcm.edu	hg19	18	46956680	46956680	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DYM	NM_017653	exon2	c.A85C	p.N29H	GGTCATTCTCAGA	.	171.0	29.0	169.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1F	4542	hgsc.bcm.edu	hg19	19	8616967	8616967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	MYO1F,colon,carcinoma,0,1	MYO1F	NM_012335	exon7	c.C586A	p.R196S	CCACGCGGGACTT	.	125.0	7.0	188.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF699	374879	hgsc.bcm.edu	hg19	19	9406673	9406673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF699	NM_198535	exon5	c.C1407G	p.H469Q	TCCAGTGTGATCT	.	55.0	8.0	57.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
ATG4D	84971	hgsc.bcm.edu	hg19	19	10655668	10655668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ATG4D	NM_032885	exon3	c.C355A	p.R119S	GTGTCCCGCCTGT	.	177.0	9.0	290.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
UNC13A	23025	hgsc.bcm.edu	hg19	19	17763482	17763482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	UNC13A	NM_001080421	exon12	c.G1397T	p.R466L	TCTCCCCGGGCCT	.	363.0	16.0	473.0	0.0	.	299	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3R2	5296	hgsc.bcm.edu	hg19	19	18274091	18274091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PIK3R2	NM_005027	exon11	c.G1309A	p.D437N	AAGGAGGACAGCG	.	75.0	13.0	135.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF85	7639	hgsc.bcm.edu	hg19	19	21132138	21132138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF85	NM_001256171	exon5	c.T908C	p.L303P	CAACTCTTACTAC	.	32.0	4.0	59.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
SUPT5H	6829	hgsc.bcm.edu	hg19	19	39964723	39964723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SUPT5H	NM_003169	exon25	c.C2613A	p.N871K	GGTCAACCCACAA	.	66.0	11.0	121.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF223	7766	hgsc.bcm.edu	hg19	19	44570872	44570872	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF223	NM_013361	exon5	c.C891T	p.F297F	GAGCTTCCGTCTT	.	107.0	15.0	148.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
FCGRT	2217	hgsc.bcm.edu	hg19	19	50017313	50017313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FCGRT	NM_001136019	exon3	c.A248G	p.Y83C	CCTGGTATTGGGA	.	49.0	19.0	63.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF473	25888	hgsc.bcm.edu	hg19	19	50549983	50549983	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF473	NM_015428	exon5	c.G2283C	p.Q761H	TTGTCAGGAATGC	.	111.0	26.0	136.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
TTYH1	57348	hgsc.bcm.edu	hg19	19	54937848	54937848	+	Splice_Site	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	TTYH1,larynx,carcinoma,0,1	TTYH1	NM_001005367	exon5	c.639-2A>G	.	CCTCCCAGGTGGC	.	116.0	21.0	162.0	1.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
KIR2DL4	3805	hgsc.bcm.edu	hg19	19	55324637	55324637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	KIR2DL4	NM_001080772	exon6	c.C764T	p.T255I	TCTTTACCATCCT	.	63.0	25.0	57.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
STAU1	6780	hgsc.bcm.edu	hg19	20	47741019	47741019	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	STAU1	NM_017453	exon7	c.A715T	p.K239X	CATTTTTCTTTGA	.	268.0	78.0	248.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41496202	41496202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DSCAM	NM_001271534	exon20	c.T3616C	p.F1206L	ACACAAAGACCAT	.	163.0	26.0	207.0	0.0	.	347	.	.	.	none	.	.	PASS	Atlas-SNP
HDHD1	8226	hgsc.bcm.edu	hg19	X	7023838	7023838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	HDHD1	NM_001135565	exon3	c.A172C	p.N58H	AGCGATTACATAT	.	33.0	12.0	34.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
ZFP37	7539	hgsc.bcm.edu	hg19	9	115806495	115806495	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZFP37	NM_003408	exon4	c.404delT	p.L135fs	.	.	196.0	29.0	165.0	0.0	.	93	.	0.147959	0	none	.	.	PASS	Atlas-INDEL
GRIP1	23426	hgsc.bcm.edu	hg19	12	66765625	66765625	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GRIP1	NM_021150	exon22	c.2706delC	p.F902fs	.	.	202.0	34.0	219.0	0.0	.	106	.	0.168317	0	none	.	.	PASS	Atlas-INDEL
RCBTB1	55213	hgsc.bcm.edu	hg19	13	50115836	50115836	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RCBTB1	NM_018191	exon11	c.1301delA	p.D434fs	.	.	86.0	15.0	95.0	0.0	.	34	.	0.174419	0	none	.	.	PASS	Atlas-INDEL
SLC7A14	57709	hgsc.bcm.edu	hg19	3	170201153	170201154	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SLC7A14	NM_020949	exon6	c.1065_1066insT	p.F355fs	.	.	117.0	14.0	166.0	0.0	.	110	.	0.119658	0	none	.	.	PASS	Atlas-INDEL
ARHGAP21	57584	hgsc.bcm.edu	hg19	10	24908604	24908604	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ARHGAP21	NM_020824	exon9	c.2221delC	p.P741fs	.	.	156.0	25.0	177.0	0.0	.	185	.	0.160256	0	none	.	.	PASS	Atlas-INDEL
INTS2	57508	hgsc.bcm.edu	hg19	17	59945081	59945082	+	In_Frame_Ins	INS	-	-	GAA	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	INTS2	NM_020748	exon25	c.3452_3453insTTC	p.Q1151delinsLQ	.	.	132.0	27.0	100.0	0.0	.	89	.	0.204545	0	none	.	.	PASS	Atlas-INDEL
MYH15	22989	hgsc.bcm.edu	hg19	3	108107907	108107918	+	In_Frame_Del	DEL	TTCCAGTTCACG	TTCCAGTTCACG	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	TTCCAGTTCACG	TTCCAGTTCACG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MYH15	NM_014981	exon39	c.5495_5506del	p.1832_1836del	.	.	136.0	21.0	242.0	0.0	.	223	.	0.154412	0	none	.	.	PASS	Atlas-INDEL
RPL24	6152	hgsc.bcm.edu	hg19	3	101401697	101401698	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RPL24	NM_000986	exon4	c.247_248insT	p.T83fs	.	.	98.0	23.0	96.0	0.0	.	8	.	0.234694	0	none	.	.	PASS	Atlas-INDEL
STOX1	219736	hgsc.bcm.edu	hg19	10	70645179	70645179	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	STOX1,NS,carcinoma,0,1	STOX1	NM_152709	exon3	c.1626delC	p.I542fs	.	.	53.0	12.0	63.0	0.0	.	75	.	0.226415	0	none	.	.	PASS	Atlas-INDEL
BAIAP2	10458	hgsc.bcm.edu	hg19	17	79082274	79082274	+	Splice_Site	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	BAIAP2	NM_001144888	exon13	c.1501-2G>-	.	.	.	55.0	12.0	70.0	0.0	.	74	.	0.218182	0	none	.	.	PASS	Atlas-INDEL
ADAP2	55803	hgsc.bcm.edu	hg19	17	29261211	29261211	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ADAP2	NM_018404	exon5	c.405delA	p.R135fs	.	.	59.0	10.0	51.0	0.0	.	36	.	0.169492	0	none	.	.	PASS	Atlas-INDEL
SYNPO	11346	hgsc.bcm.edu	hg19	5	150027927	150027927	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SYNPO	NM_001166209	exon3	c.821delT	p.L274fs	.	.	92.0	24.0	135.0	0.0	.	147	.	0.26087	0	none	.	.	PASS	Atlas-INDEL
ANK2	287	hgsc.bcm.edu	hg19	4	114195785	114195785	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ANK2	NM_001148	exon15	c.1662delA	p.A554fs	.	.	69.0	12.0	85.0	0.0	.	576	.	0.173913	0	none	.	.	PASS	Atlas-INDEL
SOCS6	9306	hgsc.bcm.edu	hg19	18	67992496	67992496	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SOCS6	NM_004232	exon2	c.591delT	p.H197fs	.	.	129.0	28.0	146.0	0.0	.	54	.	0.217054	0	none	.	.	PASS	Atlas-INDEL
