Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ZNF436	80818	hgsc.bcm.edu	hg19	1	23688888	23688888	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZNF436	NM_001077195	exon4	c.G987T	p.T329T	CTCTCCCGTGTGG	.	150.0	9.0	226.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
PSMB4	5692	hgsc.bcm.edu	hg19	1	151372078	151372078	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PSMB4	NM_002796	exon1	c.G15A	p.L5L	GTTTTTGGGGTCG	.	135.0	55.0	274.0	1.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
RIT1	6016	hgsc.bcm.edu	hg19	1	155870300	155870300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RIT1	NM_001256821	exon6	c.G590T	p.R197L	ATCTCCCGTACAA	.	282.0	14.0	381.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA17	128153	hgsc.bcm.edu	hg19	1	217975148	217975148	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	SPATA17,NS,malignant_melanoma,0,3	SPATA17	NM_138796	exon9	c.G961T	p.E321X	TACAAAGAACAAT	.	62.0	28.0	48.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228494234	228494234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	OBSCN	NM_001271223	exon55	c.G14692A	p.G4898S	CTTCAGGGCTGCA	.	61.0	30.0	99.0	0.0	.	2142	.	.	.	none	.	.	PASS	Atlas-SNP
ACTR1B	10120	hgsc.bcm.edu	hg19	2	98277105	98277105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ACTR1B	NM_005735	exon3	c.G118T	p.G40W	GCCGCCCGACACT	.	124.0	8.0	134.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
MAP4K4	9448	hgsc.bcm.edu	hg19	2	102493544	102493544	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	MAP4K4	NM_145686	exon25	c.C2988A	p.I996I	TCTTATCAACCGA	.	94.0	54.0	54.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
UPP2	151531	hgsc.bcm.edu	hg19	2	158971732	158971732	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	UPP2	NM_001135098	exon5	c.A471G	p.R157R	AGACAGATACTGT	.	131.0	39.0	140.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179430006	179430006	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TTN	NM_001267550	exon326	c.C80853A	p.T26951T	CGTTACGGTGTAT	.	271.0	11.0	211.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179468605	179468605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TTN	NM_001267550	exon282	c.T54809C	p.I18270T	TTACATATGGGAT	.	78.0	28.0	105.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
RPL37A	6168	hgsc.bcm.edu	hg19	2	217364692	217364692	+	Silent	SNP	T	T	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RPL37A	NM_000998	exon3	c.T153A	p.A51A	ACGAGCTGTGGGG	.	177.0	92.0	159.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
NBEAL2	23218	hgsc.bcm.edu	hg19	3	47049869	47049869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NBEAL2	NM_015175	exon51	c.G7816A	p.A2606T	CACCTGGCATTGG	.	43.0	25.0	33.0	0.0	.	267	.	.	.	none	.	.	PASS	Atlas-SNP
NICN1	84276	hgsc.bcm.edu	hg19	3	49463424	49463424	+	Silent	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NICN1	NM_032316	exon3	c.G315C	p.L105L	GTCACACAGCATC	.	41.0	13.0	54.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
PCBP4	57060	hgsc.bcm.edu	hg19	3	51995031	51995031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PCBP4	NM_033008	exon3	c.G100T	p.G34W	CCTTCCCGATGAT	.	180.0	13.0	207.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
POC1A	25886	hgsc.bcm.edu	hg19	3	52109979	52109979	+	Missense_Mutation	SNP	C	C	A	rs375422052	alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	POC1A	NM_015426	exon11	c.G1148T	p.R383L	GTCAACCGCTGCT	.	214.0	10.0	196.0	0.0	.	32	.	.	.	alt	.	.	PASS	Atlas-SNP
SFMBT1	51460	hgsc.bcm.edu	hg19	3	52988412	52988412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SFMBT1	NM_016329	exon3	c.T44C	p.M15T	TCTTCCATACCAG	.	226.0	135.0	223.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
FAM3D	131177	hgsc.bcm.edu	hg19	3	58625897	58625897	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	FAM3D	NM_138805	exon7	c.G330T	p.T110T	AGCTCCCGTGGTT	.	192.0	10.0	218.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB11	27107	hgsc.bcm.edu	hg19	3	101390027	101390027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZBTB11	NM_014415	exon3	c.T725C	p.L242P	ATAAAAAGATCTC	.	101.0	29.0	82.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
ALDH1L1	10840	hgsc.bcm.edu	hg19	3	125850317	125850317	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	ALDH1L1,caecum,carcinoma,0,1	ALDH1L1	NM_001270364	exon13	c.G1563T	p.A521A	GGCACCCGCATCC	.	101.0	9.0	110.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
SLCO2A1	6578	hgsc.bcm.edu	hg19	3	133692538	133692538	+	Silent	SNP	G	G	C	rs150677069	alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SLCO2A1	NM_005630	exon3	c.C366G	p.S122S	GGGCTCGGAGAGG	.	34.0	9.0	43.0	0.0	.	72	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
PSMD2	5708	hgsc.bcm.edu	hg19	3	184026587	184026587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PSMD2	NM_002808	exon21	c.G2636T	p.R879L	GGGAACGGGCAGA	.	246.0	11.0	262.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
ATP13A3	79572	hgsc.bcm.edu	hg19	3	194146121	194146121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ATP13A3	NM_024524	exon29	c.C3263T	p.A1088V	GCAATTGCCACTA	.	101.0	54.0	69.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB49	166793	hgsc.bcm.edu	hg19	4	4322599	4322599	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZBTB49	NM_145291	exon8	c.C1854A	p.S618S	TTTCTCCCAAGAC	.	39.0	21.0	62.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
CCKAR	886	hgsc.bcm.edu	hg19	4	26483517	26483517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CCKAR	NM_000730	exon5	c.G1030A	p.E344K	GGCGCTCTGCGGA	.	77.0	34.0	120.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
ANXA3	306	hgsc.bcm.edu	hg19	4	79516549	79516549	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ANXA3	NM_005139	exon8	c.A498G	p.E166E	AGATGAAAGTCTG	.	259.0	95.0	265.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
PLRG1	5356	hgsc.bcm.edu	hg19	4	155470082	155470082	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PLRG1	NM_002669	exon2	c.A15G	p.V5V	TTTCTGTACCTCC	.	29.0	11.0	31.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
PCSK1	5122	hgsc.bcm.edu	hg19	5	95728748	95728748	+	Missense_Mutation	SNP	C	C	T	rs140941383		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PCSK1	NM_000439	exon14	c.G2219A	p.R740Q	AGCAGCCGGTCGT	.	255.0	109.0	306.0	1.0	.	93	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
CHD1	1105	hgsc.bcm.edu	hg19	5	98236974	98236974	+	Missense_Mutation	SNP	T	T	C	rs370850474		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CHD1	NM_001270	exon5	c.A503G	p.E168G	CTCTCTTCTTCAG	.	144.0	63.0	149.0	0.0	.	137	.	.	.	weak	.	.	PASS	Atlas-SNP
GTF2H4	2968	hgsc.bcm.edu	hg19	6	30877829	30877829	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	GTF2H4	NM_001517	exon4	c.C363T	p.A121A	CATTGCCCTTCTG	.	133.0	57.0	243.0	1.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
HLA-DQA2	3118	hgsc.bcm.edu	hg19	6	32714066	32714066	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HLA-DQA2	NM_020056	exon4	c.C663T	p.C221C	GGTCTGCGCCCTG	.	154.0	73.0	217.0	1.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152671451	152671451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	SYNE1_ENST00000265368,NS,carcinoma,0,2	SYNE1	NM_182961	exon72	c.A11753G	p.E3918G	TTCGCCTCCAGAC	.	85.0	23.0	155.0	0.0	.	3227	.	.	.	none	.	.	PASS	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	hg19	6	157527600	157527600	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ARID1B	NM_020732	exon20	c.G5325A	p.K1775K	CCCAAAGGAGAAG	.	114.0	43.0	133.0	0.0	.	320	.	.	.	none	.	.	PASS	Atlas-SNP
ABCB1	5243	hgsc.bcm.edu	hg19	7	87179321	87179321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ABCB1	NM_000927	exon14	c.G1400T	p.R467L	ATTTCCCGTAGAA	.	243.0	12.0	171.0	0.0	.	263	.	.	.	none	.	.	PASS	Atlas-SNP
ANGPT2	285	hgsc.bcm.edu	hg19	8	6360731	6360731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ANGPT2	NM_001147	exon9	c.C1382A	p.P461Q	CTCTGTGGATAGT	.	66.0	24.0	88.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
BIN3	55909	hgsc.bcm.edu	hg19	8	22488017	22488017	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	BIN3	NM_018688	exon5	c.C235T	p.L79L	TGTTCAGAAGGTC	.	165.0	65.0	289.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
RAB11FIP1	80223	hgsc.bcm.edu	hg19	8	37732715	37732715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	RAB11FIP1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	RAB11FIP1	NM_025151	exon3	c.C940A	p.R314S	TAGAGCGGGAAAG	.	302.0	13.0	473.0	1.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRD	5789	hgsc.bcm.edu	hg19	9	8471073	8471073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PTPRD	NM_002839	exon31	c.A3426G	p.I1142M	AATTATTATGTAG	.	122.0	56.0	106.0	0.0	.	1348	.	.	.	none	.	.	PASS	Atlas-SNP
TOPORS	10210	hgsc.bcm.edu	hg19	9	32541815	32541815	+	Missense_Mutation	SNP	C	C	G	rs371709773	alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TOPORS	NM_005802	exon3	c.G2708C	p.R903P	GGGGAACGTGAAG	.	184.0	71.0	240.0	0.0	.	127	.	.	.	alt	.	.	PASS	Atlas-SNP
VCP	7415	hgsc.bcm.edu	hg19	9	35061057	35061057	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	VCP	NM_007126	exon11	c.T1314C	p.D438D	CTCGGCATCAATG	.	252.0	122.0	409.0	1.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM2	23670	hgsc.bcm.edu	hg19	9	74313090	74313090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TMEM2	NM_013390	exon20	c.C3408A	p.S1136R	CCTGTGGCTTTTG	.	146.0	54.0	156.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84609482	84609482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_001001670	exon4	c.T4097C	p.I1366T	CCAGCATATCATA	.	25.0	12.0	40.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PAPPA	5069	hgsc.bcm.edu	hg19	9	118949550	118949550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PAPPA	NM_002581	exon2	c.G533T	p.R178L	CAGACCGAGCCCG	.	76.0	29.0	132.0	0.0	.	243	.	.	.	none	.	.	PASS	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	hg19	9	131370474	131370474	+	Silent	SNP	C	C	A	rs2228951	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SPTAN1	NM_003127	exon34	c.C4410A	p.T1470T	GAATACCGAAGAC	.	212.0	11.0	323.0	0.0	.	266	.	.	.	alt	C|0.996;T|0.004	.	PASS	Atlas-SNP
CPEB3	22849	hgsc.bcm.edu	hg19	10	93812079	93812079	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CPEB3	NM_014912	exon10	c.T1987C	p.C663R	ATTCACAGTAATA	.	45.0	19.0	86.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
HARBI1	283254	hgsc.bcm.edu	hg19	11	46637368	46637368	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HARBI1	NM_173811	exon2	c.G420T	p.G140G	TGGCATCCCTGCC	.	226.0	84.0	417.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
PPP6R3	55291	hgsc.bcm.edu	hg19	11	68377390	68377390	+	Silent	SNP	T	T	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PPP6R3	NM_001164160	exon24	c.T2487A	p.S829S	ACTGTCTACCTCT	.	124.0	54.0	205.0	0.0	.	159	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1C	775	hgsc.bcm.edu	hg19	12	2566788	2566788	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	CACNA1C_ENST00000344100,NS,carcinoma,0,2	CACNA1C	NM_001129831	exon5	c.G673T	p.G225X	GCTCTCGGAGGGA	.	246.0	10.0	340.0	0.0	.	1023	.	.	.	none	.	.	PASS	Atlas-SNP
PEX5	5830	hgsc.bcm.edu	hg19	12	7343122	7343122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PEX5	NM_001131023	exon2	c.T149C	p.V50A	AGGCAGTGAGTGT	.	21.0	11.0	22.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26749865	26749865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ITPR2	NM_002223	exon31	c.C4205A	p.P1402Q	TCCAGCGGGAGAA	.	126.0	9.0	97.0	0.0	.	270	.	.	.	none	.	.	PASS	Atlas-SNP
IPO8	10526	hgsc.bcm.edu	hg19	12	30790088	30790088	+	Silent	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	IPO8	NM_006390	exon22	c.G2523C	p.L841L	GATACTCAGTCCT	.	126.0	78.0	93.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
FAM60A	58516	hgsc.bcm.edu	hg19	12	31435663	31435663	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	FAM60A	NM_021238	exon7	c.T649G	p.S217A	GAGTGGAGATGGG	.	94.0	51.0	112.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
HSP90B1	7184	hgsc.bcm.edu	hg19	12	104336447	104336447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HSP90B1	NM_003299	exon12	c.T1517C	p.L506P	CACGTCTTGCTAA	.	159.0	94.0	115.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1H	283446	hgsc.bcm.edu	hg19	12	109834250	109834250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	MYO1H,NS,carcinoma,0,1	MYO1H	NM_001101421	exon3	c.C304T	p.L102F	TTCATCCTCATTT	.	88.0	46.0	61.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124848291	124848291	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NCOR2	NM_006312	exon23	c.T2862C	p.N954N	TGAGGCATTGGCC	.	145.0	77.0	190.0	0.0	.	475	.	.	.	none	.	.	PASS	Atlas-SNP
EP400	57634	hgsc.bcm.edu	hg19	12	132522561	132522561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	EP400	NM_015409	exon32	c.G6127A	p.A2043T	GTCAAAGCTGAGG	.	230.0	61.0	230.0	0.0	.	370	.	.	.	none	.	.	PASS	Atlas-SNP
EP400	57634	hgsc.bcm.edu	hg19	12	132522562	132522562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	EP400	NM_015409	exon32	c.C6128T	p.A2043V	TCAAAGCTGAGGA	.	229.0	60.0	231.0	0.0	.	370	.	.	.	none	.	.	PASS	Atlas-SNP
KBTBD6	89890	hgsc.bcm.edu	hg19	13	41704906	41704906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KBTBD6	NM_152903	exon1	c.A1742G	p.N581S	ACCCGGTTCTTTT	.	257.0	154.0	230.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
NALCN	259232	hgsc.bcm.edu	hg19	13	101944368	101944368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NALCN	NM_052867	exon9	c.C1020A	p.S340R	AGTGCTGCTTCTC	.	52.0	33.0	69.0	0.0	.	431	.	.	.	none	.	.	PASS	Atlas-SNP
SIPA1L1	26037	hgsc.bcm.edu	hg19	14	72055716	72055716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SIPA1L1	NM_015556	exon2	c.T1127C	p.L376P	GACCTCTGTCTCA	.	68.0	25.0	111.0	0.0	.	219	.	.	.	none	.	.	PASS	Atlas-SNP
THBS1	7057	hgsc.bcm.edu	hg19	15	39885267	39885267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	THBS1	NM_003246	exon18	c.T2834C	p.I945T	ATGACATCTGTCC	.	73.0	33.0	104.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
ZFP106	64397	hgsc.bcm.edu	hg19	15	42742117	42742117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZFP106	NM_022473	exon2	c.G2284T	p.G762C	GGTGACCGCTAAT	.	163.0	9.0	252.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
EPB42	2038	hgsc.bcm.edu	hg19	15	43508525	43508525	+	Missense_Mutation	SNP	C	C	T	rs202154600	bycluster	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	EPB42,caecum,carcinoma,0,1	EPB42	NM_000119	exon2	c.G227A	p.R76H	GGAGCGCGGAAGT	.	72.0	33.0	121.0	1.0	.	53	.	.	.	weak	C|0.999;T|0.001	0.001	PASS	Atlas-SNP
HMG20A	10363	hgsc.bcm.edu	hg19	15	77756662	77756662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HMG20A	NM_018200	exon4	c.A170G	p.Q57R	TCTCTCAAGGTCA	.	93.0	38.0	101.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	hg19	16	2130345	2130345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TSC2	NM_001114382	exon30	c.G3577A	p.G1193S	ACCCAGGGCTGGG	.	98.0	25.0	118.0	0.0	.	364	.	.	.	none	.	.	PASS	Atlas-SNP
LOC81691	0	hgsc.bcm.edu	hg19	16	20851091	20851091	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	LOC81691	NM_030941	exon14	c.C1398T	p.A466A	GCAGGCCAGAGTG	.	503.0	316.0	517.0	1.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
CTDNEP1	23399	hgsc.bcm.edu	hg19	17	7149598	7149598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CTDNEP1	NM_001143775	exon5	c.T452C	p.I151T	TTAAGAATGCTTC	.	154.0	42.0	155.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
NCOR1	9611	hgsc.bcm.edu	hg19	17	16089949	16089949	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NCOR1	NM_001190440	exon2	c.C161G	p.S54X	AGCTGTGATGCCT	.	98.0	29.0	70.0	0.0	.	240	.	.	.	none	.	.	PASS	Atlas-SNP
SRCIN1	80725	hgsc.bcm.edu	hg19	17	36708962	36708962	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SRCIN1	NM_025248	exon12	c.G2331C	p.K777N	CCCACCCTTGAGC	.	99.0	32.0	121.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
CASC3	22794	hgsc.bcm.edu	hg19	17	38319005	38319005	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CASC3	NM_007359	exon6	c.G636A	p.W212X	GCTATGGAAGGAT	.	59.0	15.0	67.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
COIL	8161	hgsc.bcm.edu	hg19	17	55028268	55028268	+	Missense_Mutation	SNP	C	C	A	rs373166690	alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	COIL	NM_004645	exon2	c.G335T	p.R112L	AATGCCCGCTTCT	.	236.0	10.0	143.0	0.0	.	49	.	.	.	alt	.	.	PASS	Atlas-SNP
MPO	4353	hgsc.bcm.edu	hg19	17	56348163	56348163	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	MPO	NM_000250	exon12	c.T2092A	p.S698T	GCAATGAGATCTG	.	93.0	57.0	144.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
KCNJ16	3773	hgsc.bcm.edu	hg19	17	68129132	68129132	+	Silent	SNP	C	C	A	rs142625269	alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KCNJ16	NM_001270422	exon6	c.C904A	p.R302R	GTTCCCCGAGAAA	.	151.0	9.0	127.0	0.0	.	72	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
RAB37	326624	hgsc.bcm.edu	hg19	17	72736999	72736999	+	Silent	SNP	C	C	A	rs146770958	bycluster;byfrequency;alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RAB37	NM_001163989	exon2	c.C201A	p.T67T	AGCCACCGTCGGC	.	188.0	9.0	214.0	0.0	.	69	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
PSMD8	5714	hgsc.bcm.edu	hg19	19	38874011	38874011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PSMD8	NM_002812	exon7	c.A1034G	p.Q345R	CCCGGCAGCTGGA	.	28.0	9.0	66.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
CEACAM6	4680	hgsc.bcm.edu	hg19	19	42260867	42260867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	CEACAM6,NS,carcinoma,0,1	CEACAM6	NM_002483	exon2	c.C424A	p.P142T	GTATACCGTGAGT	.	299.0	17.0	514.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF180	7733	hgsc.bcm.edu	hg19	19	44981073	44981073	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZNF180	NM_013256	exon5	c.C1625G	p.T542S	GTGTGAGTTCTTT	.	89.0	33.0	96.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
LILRA3	11026	hgsc.bcm.edu	hg19	19	54803120	54803120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	LILRA3	NM_006865	exon4	c.C557A	p.P186H	CTCACGGGGCCCA	.	98.0	44.0	215.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF324B	388569	hgsc.bcm.edu	hg19	19	58966903	58966903	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZNF324B	NM_207395	exon4	c.T592A	p.C198S	AAGCCATGTGCAC	.	44.0	17.0	117.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
EPB41L1	2036	hgsc.bcm.edu	hg19	20	34800245	34800245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	EPB41L1	NM_001258329	exon17	c.A2131G	p.I711V	AAGAAGATTGAGC	.	95.0	33.0	93.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
SETD4	54093	hgsc.bcm.edu	hg19	21	37410517	37410517	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SETD4	NM_017438	exon10	c.G1119C	p.K373N	ACTTGTCTTCTCA	.	133.0	62.0	138.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
CERK	64781	hgsc.bcm.edu	hg19	22	47108141	47108141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CERK	NM_022766	exon4	c.A429C	p.K143N	TTGTCCTTTTCCT	.	66.0	26.0	54.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
AMER1	139285	hgsc.bcm.edu	hg19	X	63411696	63411696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_152424	exon2	c.C1471T	p.R491C	CCCTGCGGACAAG	.	25.0	21.0	77.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TMPO	7112	hgsc.bcm.edu	hg19	12	98941479	98941479	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TMPO	NM_001032283	exon9	c.1207delG	p.E403fs	.	.	109.0	47.0	95.0	0.0	.	111	.	0.431193	0	none	.	.	PASS	Atlas-INDEL
UBR4	23352	hgsc.bcm.edu	hg19	1	19448476	19448477	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	UBR4	NM_020765	exon67	c.9847_9848insT	p.A3283fs	.	.	75.0	30.0	105.0	0.0	.	415	.	0.4	0	none	.	.	PASS	Atlas-INDEL
SCN8A	6334	hgsc.bcm.edu	hg19	12	52145329	52145329	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SCN8A	NM_001177984	exon14	c.2321delA	p.H774fs	.	.	109.0	36.0	108.0	0.0	.	331	.	0.330275	0	none	.	.	PASS	Atlas-INDEL
RRP12	23223	hgsc.bcm.edu	hg19	10	99120314	99120314	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RRP12	NM_015179	exon31	c.3630delT	p.P1210fs	.	.	81.0	39.0	133.0	0.0	.	97	.	0.481481	0	none	.	.	PASS	Atlas-INDEL
CDK13	8621	hgsc.bcm.edu	hg19	7	40117701	40117701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CDK13	NM_003718	exon10	c.2877delG	p.K959fs	.	.	139.0	64.0	78.0	0.0	.	114	.	0.460432	0	none	.	.	PASS	Atlas-INDEL
