Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
RNF115	27246	hgsc.bcm.edu	hg19	1	145688091	145688091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	RNF115	NM_014455	exon9	c.T786A	p.H262Q	TCAGCATGACACA	.	139.0	48.0	171.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP30	257106	hgsc.bcm.edu	hg19	1	161021130	161021130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ARHGAP30	NM_001025598	exon10	c.G1394T	p.G465V	CCAGGGCCAGGGC	.	57.0	20.0	51.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
VPS54	51542	hgsc.bcm.edu	hg19	2	64199372	64199372	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	VPS54	NM_016516	exon4	c.A385T	p.K129X	GAATCTTCTCTCT	.	63.0	22.0	52.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
ARID5A	10865	hgsc.bcm.edu	hg19	2	97216937	97216937	+	Silent	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ARID5A	NM_212481	exon7	c.G672A	p.G224G	CTCTGGGTCTTCT	.	108.0	27.0	131.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
CNNM4	26504	hgsc.bcm.edu	hg19	2	97427340	97427340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CNNM4	NM_020184	exon1	c.C604A	p.L202I	TCTGGCCTCAACC	.	125.0	47.0	157.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
PRPF40A	55660	hgsc.bcm.edu	hg19	2	153532998	153532998	+	Missense_Mutation	SNP	T	T	C	rs372660010		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	PRPF40A_ENST00000410080,NS,carcinoma,0,3	PRPF40A	NM_017892	exon10	c.A952G	p.T318A	CAGGGGTACTAGT	.	24.0	2.0	23.0	0.0	.	149	.	.	.	weak	.	.	PASS	Atlas-SNP
PSMD6	9861	hgsc.bcm.edu	hg19	3	64004274	64004274	+	Splice_Site	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PSMD6	NM_001271779	exon7	c.985+1G>T	.	TCCTTACCTAATG	.	34.0	12.0	44.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	hg19	3	97202865	97202865	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	EPHA6	NM_001080448	exon10	c.A2162C	p.D721A	AGATTGATCCCTC	.	46.0	26.0	42.0	0.0	.	439	.	.	.	none	.	.	PASS	Atlas-SNP
PHC3	80012	hgsc.bcm.edu	hg19	3	169847187	169847187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PHC3	NM_024947	exon8	c.C1073T	p.P358L	GGGGGTGGGTCTT	.	156.0	45.0	127.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
PDGFRA	5156	hgsc.bcm.edu	hg19	4	55139834	55139834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	PDGFRA,NS,carcinoma,0,1	PDGFRA	NM_006206	exon10	c.G1495A	p.V499M	ATCGCCGTGCGAT	.	79.0	25.0	126.0	0.0	.	1583	.	.	.	none	.	.	PASS	Atlas-SNP
LPCAT1	79888	hgsc.bcm.edu	hg19	5	1488543	1488543	+	Silent	SNP	A	A	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	LPCAT1	NM_024830	exon5	c.T630A	p.T210T	TGTACAAGTTCCT	.	107.0	47.0	152.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
NSUN2	54888	hgsc.bcm.edu	hg19	5	6620280	6620280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	NSUN2	NM_017755	exon7	c.G754A	p.D252N	CCACATCTATCTG	.	122.0	40.0	125.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82836813	82836813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	VCAN	NM_004385	exon8	c.A7991G	p.D2664G	AACTAGATCACAT	.	153.0	45.0	157.0	0.0	.	498	.	.	.	none	.	.	PASS	Atlas-SNP
SLC22A5	6584	hgsc.bcm.edu	hg19	5	131729504	131729504	+	Splice_Site	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	SLC22A5	NM_003060	exon9	c.1586+1G>A	.	CAAAGGGTAAGAA	.	154.0	61.0	211.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
DPYSL3	1809	hgsc.bcm.edu	hg19	5	146780335	146780335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	DPYSL3	NM_001197294	exon10	c.G1372T	p.G458W	CCTTCCCAATTGC	.	76.0	4.0	81.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R10	5514	hgsc.bcm.edu	hg19	6	30577691	30577691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PPP1R10	NM_002714	exon3	c.C31A	p.L11I	TGAGAAGTTCTTT	.	97.0	33.0	106.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
URGCP	55665	hgsc.bcm.edu	hg19	7	43918184	43918184	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	URGCP	NM_001077663	exon6	c.T878G	p.F293C	TGCCAGAAGCAGT	.	75.0	21.0	70.0	0.0	.	170	.	.	.	none	.	.	PASS	Atlas-SNP
BAZ1B	9031	hgsc.bcm.edu	hg19	7	72907199	72907199	+	Silent	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	BAZ1B	NM_032408	exon5	c.A624G	p.G208G	CCTTTCTCCTTTT	.	112.0	26.0	51.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJC2	27000	hgsc.bcm.edu	hg19	7	102963052	102963052	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	DNAJC2	NM_001129887	exon9	c.T839A	p.I280K	TTTTTTATCCTTG	.	60.0	33.0	53.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJC2	27000	hgsc.bcm.edu	hg19	7	102963053	102963053	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	DNAJC2	NM_001129887	exon9	c.A838T	p.I280L	TTTTTATCCTTGG	.	60.0	33.0	53.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	hg19	8	144997708	144997708	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PLEC	NM_201380	exon31	c.A6800T	p.Q2267L	TGTGCCTGAGCCC	.	24.0	5.0	27.0	0.0	.	1144	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA2	20	hgsc.bcm.edu	hg19	9	139908396	139908396	+	Silent	SNP	G	G	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ABCA2	NM_212533	exon28	c.C4425G	p.V1475V	GCGTTTGACCAGC	.	33.0	11.0	37.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61836183	61836183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ANK3	NM_020987	exon37	c.A4456G	p.R1486G	GGGATCTTGTTGC	.	58.0	27.0	55.0	0.0	.	703	.	.	.	none	.	.	PASS	Atlas-SNP
MSS51	118490	hgsc.bcm.edu	hg19	10	75185676	75185676	+	Missense_Mutation	SNP	C	C	T	rs143815503	bycluster;byfrequency;alternate_allele	TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	.	NM_001024593	exon5	c.G962A	p.G321D	ATTGTGCCAGGTT	.	56.0	4.0	55.0	0.0	.	.	.	.	.	alt	C|1.000;A|0.000	.	PASS	Atlas-SNP
GUCY2C	2984	hgsc.bcm.edu	hg19	12	14796597	14796597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	GUCY2C	NM_004963	exon17	c.G1841A	p.R614H	TTCAGACGACCAT	.	217.0	51.0	247.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
PRKAG1	5571	hgsc.bcm.edu	hg19	12	49396719	49396719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PRKAG1	NM_001206709	exon12	c.A986G	p.Q329R	AGGGCCTGCAGGA	.	92.0	4.0	98.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
KDM2B	84678	hgsc.bcm.edu	hg19	12	121947832	121947832	+	Silent	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	KDM2B	NM_032590	exon11	c.G1185A	p.R395R	GGGCTTCCTCGGG	.	70.0	24.0	99.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23909472	23909472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	SACS	NM_014363	exon10	c.T8543A	p.F2848Y	CGTGGGAAAAGAG	.	155.0	57.0	139.0	0.0	.	871	.	.	.	none	.	.	PASS	Atlas-SNP
B3GALTL	145173	hgsc.bcm.edu	hg19	13	31821210	31821210	+	Silent	SNP	A	A	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	B3GALTL	NM_194318	exon5	c.A321G	p.A107A	AGGTGCATGGACC	.	105.0	30.0	73.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
RNASE11	122651	hgsc.bcm.edu	hg19	14	21052161	21052161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	RNASE11	NM_145250	exon3	c.G473T	p.C158F	AACTGGCACACTG	.	64.0	4.0	65.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
ZFP106	64397	hgsc.bcm.edu	hg19	15	42717056	42717056	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ZFP106	NM_022473	exon13	c.T5097G	p.H1699Q	TTTGCTATGGCCC	.	31.0	14.0	55.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1199	57214	hgsc.bcm.edu	hg19	15	81230320	81230320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	KIAA1199	NM_018689	exon24	c.G3407A	p.G1136E	ACTCAGGGTGAGC	.	28.0	14.0	23.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
BCMO1	53630	hgsc.bcm.edu	hg19	16	81314514	81314514	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	BCMO1,head_neck,malignant_melanoma,0,1	BCMO1	NM_017429	exon8	c.C1154G	p.A385G	CCACGGCCCTGAA	.	50.0	2.0	51.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
RAB3A	5864	hgsc.bcm.edu	hg19	19	18313494	18313494	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	RAB3A	NM_002866	exon2	c.C57G	p.F19L	GTAGTCGAAGTTC	.	195.0	56.0	246.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
CSNK2A1	1457	hgsc.bcm.edu	hg19	20	468205	468205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CSNK2A1	NM_001895	exon11	c.G839A	p.R280Q	TCCCATCGCTTTC	.	70.0	21.0	69.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
HMOX1	3162	hgsc.bcm.edu	hg19	22	35779129	35779129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	HMOX1	NM_002133	exon2	c.G54T	p.K18N	CCTGAAGGAGGCC	.	94.0	29.0	156.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
SUN2	25777	hgsc.bcm.edu	hg19	22	39146253	39146253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	SUN2	NM_001199579	exon5	c.T560C	p.L187P	ATCCAGAGTAAGG	.	66.0	22.0	82.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
DDX3X	1654	hgsc.bcm.edu	hg19	X	41202004	41202004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	DDX3X	NM_001193416	exon6	c.G458A	p.G153E	TTTCTGGAGGCAA	.	145.0	54.0	146.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
RPL36A-HNRNPH2	0	hgsc.bcm.edu	hg19	X	100646010	100646010	+	Silent	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	.	NM_001199973	exon1	c.C87T	p.R29R	TTTCCGCGCCGAT	.	165.0	44.0	164.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC129	223075	hgsc.bcm.edu	hg19	7	31683522	31683527	+	In_Frame_Del	DEL	GACTTT	GACTTT	-	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	GACTTT	GACTTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CCDC129	NM_001257968	exon11	c.2615_2620del	p.872_874del	.	.	121.0	26.0	64.0	0.0	.	127	.	0.214876	0	none	.	.	PASS	Atlas-INDEL
CEP63	80254	hgsc.bcm.edu	hg19	3	134250746	134250746	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CEP63	NM_001042383	exon4	c.281delT	p.M94fs	.	.	80.0	41.0	79.0	0.0	.	56	.	0.5125	0	none	.	.	PASS	Atlas-INDEL
CD86	942	hgsc.bcm.edu	hg19	3	121825262	121825263	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CD86	NM_175862	exon4	c.617_618del	p.206_206del	.	.	362.0	177.0	263.0	0.0	.	43	.	0.48895	0	none	.	.	PASS	Atlas-INDEL
