Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
AHDC1	27245	hgsc.bcm.edu	hg19	1	27875947	27875947	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	AHDC1	NM_001029882	exon6	c.A2680C	p.K894Q	TGGCCTTGGCTCC	.	55.0	33.0	53.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152279672	152279672	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	FLG	NM_002016	exon3	c.G7690T	p.G2564X	TGGATCCCCAGTT	.	433.0	213.0	424.0	1.0	.	900	.	.	.	none	.	.	PASS	Atlas-SNP
MYOC	4653	hgsc.bcm.edu	hg19	1	171605341	171605341	+	Silent	SNP	G	G	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MYOC	NM_000261	exon3	c.C1239G	p.L413L	TTGTTCGAGTTCC	.	155.0	63.0	214.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228473855	228473855	+	Silent	SNP	G	G	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	OBSCN	NM_001271223	exon39	c.G10368C	p.R3456R	TTGCCGGATCTCC	.	19.0	12.0	28.0	0.0	.	2142	.	.	.	none	.	.	PASS	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32667276	32667276	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	BIRC6	NM_016252	exon18	c.A4088C	p.H1363P	GAGTTCATTCAAA	.	69.0	37.0	74.0	0.0	.	838	.	.	.	none	.	.	PASS	Atlas-SNP
HNRPLL	92906	hgsc.bcm.edu	hg19	2	38791355	38791355	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	HNRPLL	NM_138394	exon13	c.A1598T	p.K533M	CAAAGCTTCAATG	.	142.0	69.0	164.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
SLC3A1	6519	hgsc.bcm.edu	hg19	2	44508525	44508525	+	Splice_Site	SNP	G	G	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	SLC3A1	NM_000341	exon3	c.611-1G>C	.	TCATTAGGTTTAA	.	74.0	32.0	90.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
FSHR	2492	hgsc.bcm.edu	hg19	2	49190328	49190328	+	Silent	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	FSHR	NM_000145	exon10	c.C1632T	p.V544V	ACAGATGACCACA	.	38.0	18.0	46.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
MRPS5	64969	hgsc.bcm.edu	hg19	2	95753148	95753148	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MRPS5	NM_031902	exon12	c.G1247C	p.G416A	TTCATTCCCTGTG	.	84.0	41.0	100.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
IL1RL2	8808	hgsc.bcm.edu	hg19	2	102836361	102836361	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	IL1RL2	NM_003854	exon8	c.A875C	p.E292A	TTCGGGAACATAA	.	98.0	40.0	93.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179517427	179517427	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TTN	NM_001267550	exon201	c.A38996C	p.K12999T	GGCACTTTCTTTT	.	210.0	95.0	240.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
WNT10A	80326	hgsc.bcm.edu	hg19	2	219754716	219754716	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	WNT10A,NS,carcinoma,0,1	WNT10A	NM_025216	exon3	c.G387C	p.E129D	CCGAGAGAGCGCT	.	119.0	44.0	115.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
NR1D2	9975	hgsc.bcm.edu	hg19	3	24003534	24003534	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	NR1D2	NM_005126	exon5	c.T584G	p.M195R	GTGCAATGAAGAC	.	60.0	26.0	70.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
TGM4	7047	hgsc.bcm.edu	hg19	3	44935102	44935102	+	Missense_Mutation	SNP	G	G	A	rs147559877		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TGM4	NM_003241	exon5	c.G464A	p.R155H	ACGAGCGCAAAGA	.	82.0	36.0	90.0	0.0	.	82	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
LZTFL1	54585	hgsc.bcm.edu	hg19	3	45874547	45874547	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	LZTFL1	NM_020347	exon5	c.A451C	p.N151H	CCTTGTTTAGGAG	.	98.0	35.0	134.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
USP4	7375	hgsc.bcm.edu	hg19	3	49362339	49362339	+	Silent	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	USP4	NM_199443	exon5	c.A621G	p.L207L	CTGGTATAGCCCA	.	204.0	99.0	276.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
CNTN3	5067	hgsc.bcm.edu	hg19	3	74350871	74350871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CNTN3	NM_020872	exon14	c.C1872A	p.N624K	GCTATGGTTGTCT	.	103.0	48.0	125.0	0.0	.	174	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3CB	5291	hgsc.bcm.edu	hg19	3	138456588	138456588	+	Silent	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PIK3CB	NM_006219	exon4	c.A762G	p.V254V	ATATTCTACTCTC	.	108.0	56.0	118.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
RNF168	165918	hgsc.bcm.edu	hg19	3	196214405	196214405	+	Silent	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RNF168	NM_152617	exon3	c.C423A	p.A141A	TTCACTGGCTTTG	.	215.0	105.0	231.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
TLR6	10333	hgsc.bcm.edu	hg19	4	38830116	38830116	+	Missense_Mutation	SNP	C	C	A	rs3796508	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TLR6	NM_006068	exon2	c.G979T	p.V327L	AAAACACGGTGTA	.	72.0	33.0	80.0	0.0	.	67	.	.	.	alt	C|0.981;T|0.019	.	PASS	Atlas-SNP
YTHDC1	91746	hgsc.bcm.edu	hg19	4	69203291	69203291	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	YTHDC1	NM_001031732	exon3	c.A458C	p.E153A	ACTACCTCAGAAC	.	75.0	38.0	78.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
ENAM	10117	hgsc.bcm.edu	hg19	4	71510231	71510231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ENAM	NM_031889	exon9	c.C3088T	p.P1030S	TCCAATCCAGAAG	.	129.0	59.0	127.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
ANXA3	306	hgsc.bcm.edu	hg19	4	79512751	79512751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ANXA3	NM_005139	exon7	c.C457T	p.R153W	GACTTCCGGAAAG	.	287.0	114.0	271.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
TRIO	7204	hgsc.bcm.edu	hg19	5	14471560	14471560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TRIO	NM_007118	exon38	c.C5897T	p.S1966F	CCAGCTCTTTAAA	.	124.0	89.0	106.0	0.0	.	305	.	.	.	none	.	.	PASS	Atlas-SNP
RICTOR	253260	hgsc.bcm.edu	hg19	5	38954924	38954924	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RICTOR	NM_152756	exon27	c.T2649G	p.Y883X	TTGTCCATAAAGG	.	255.0	148.0	132.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3R1	5295	hgsc.bcm.edu	hg19	5	67588178	67588178	+	Silent	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PIK3R1	NM_181523	exon8	c.A1008G	p.G336G	CTGGGGAGATATC	.	225.0	74.0	177.0	0.0	.	869	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3R1	5295	hgsc.bcm.edu	hg19	5	67591286	67591286	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PIK3R1	NM_181523	exon14	c.A1784T	p.N595I	AGTTGAACGAGTG	.	126.0	39.0	87.0	0.0	.	869	.	.	.	none	.	.	PASS	Atlas-SNP
ACSL6	23305	hgsc.bcm.edu	hg19	5	131324510	131324510	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ACSL6	NM_001009185	exon6	c.A640T	p.I214F	TGATGATGTAGCG	.	304.0	104.0	220.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	hg19	5	160113261	160113261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ATP10B	NM_025153	exon6	c.C295A	p.L99M	GGAACAGGAAATA	.	57.0	12.0	38.0	0.0	.	201	.	.	.	none	.	.	PASS	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	hg19	5	160113262	160113262	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ATP10B	NM_025153	exon6	c.C294G	p.F98L	GAACAGGAAATAG	.	57.0	12.0	38.0	0.0	.	201	.	.	.	none	.	.	PASS	Atlas-SNP
BTNL8	79908	hgsc.bcm.edu	hg19	5	180374575	180374575	+	Missense_Mutation	SNP	G	G	A	rs371555886		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	BTNL8	NM_001159708	exon4	c.G737A	p.G246D	GCTGTGGCCTATT	.	755.0	485.0	570.0	0.0	.	114	.	.	.	weak	.	.	PASS	Atlas-SNP
MTCH1	23787	hgsc.bcm.edu	hg19	6	36949411	36949411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MTCH1	NM_014341	exon2	c.A359T	p.N120I	AGCACATTGGTCC	.	21.0	21.0	71.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
LRRN3	54674	hgsc.bcm.edu	hg19	7	110763780	110763780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	LRRN3	NM_018334	exon2	c.A952G	p.N318D	GCTACTAACAACC	.	107.0	59.0	106.0	0.0	.	132	.	.	.	none	.	.	PASS	Atlas-SNP
TNPO3	23534	hgsc.bcm.edu	hg19	7	128626935	128626935	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TNPO3	NM_012470	exon12	c.A1538T	p.K513M	AGGGGCTTTTCAC	.	128.0	77.0	123.0	0.0	.	148	.	.	.	none	.	.	PASS	Atlas-SNP
GBA2	57704	hgsc.bcm.edu	hg19	9	35739010	35739010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	GBA2	NM_020944	exon11	c.T1784C	p.I595T	TCCCCAATATCAT	.	33.0	18.0	52.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF169	169841	hgsc.bcm.edu	hg19	9	97063238	97063238	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZNF169	NM_194320	exon5	c.C1398T	p.G466G	GCGTGGCTTTGGT	.	79.0	38.0	87.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	hg19	9	114503767	114503767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	C9orf84	NM_173521	exon9	c.T971A	p.F324Y	AGCAAAAATGGGT	.	103.0	53.0	75.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
TUBB4B	10383	hgsc.bcm.edu	hg19	9	140137389	140137389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	NM_006088	exon4	c.T719C	p.L240P	CCTGCCTGCGCTT	.	52.0	24.0	42.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ABLIM1	3983	hgsc.bcm.edu	hg19	10	116225561	116225561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ABLIM1	NM_002313	exon12	c.T1337C	p.M446T	TGGATCATCCGAT	.	174.0	88.0	178.0	0.0	.	131	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM22	10346	hgsc.bcm.edu	hg19	11	5717510	5717510	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TRIM22	NM_001199573	exon2	c.C48T	p.P16P	CTGCCCCATCTGC	.	72.0	40.0	66.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
OR2AT4	341152	hgsc.bcm.edu	hg19	11	74800733	74800733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	OR2AT4	NM_001005285	exon1	c.C26T	p.S9L	TCCACTGATTCAT	.	89.0	43.0	88.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	hg19	11	76867021	76867021	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MYO7A	NM_001127179	exon5	c.C354T	p.H118H	AGAGCACATCCGC	.	13.0	9.0	28.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
CEP164	22897	hgsc.bcm.edu	hg19	11	117222658	117222658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	CEP164,caecum,carcinoma,0,1	CEP164	NM_001271933	exon4	c.A347G	p.K116R	AAAAAAAGGAAAA	.	41.0	2.0	32.0	1.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
METTL25	84190	hgsc.bcm.edu	hg19	12	82752495	82752495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	NM_032230	exon1	c.G151A	p.V51I	GAGCTGGTCGACT	.	103.0	39.0	83.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PROSER1	80209	hgsc.bcm.edu	hg19	13	39587414	39587414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	NM_025138	exon11	c.G1975T	p.A659S	ACAATGCAGGATT	.	99.0	50.0	151.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77799654	77799654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MYCBP2	NM_015057	exon19	c.A2773G	p.K925E	TGATTTTGCTTGC	.	146.0	65.0	152.0	0.0	.	1029	.	.	.	none	.	.	PASS	Atlas-SNP
IRF9	10379	hgsc.bcm.edu	hg19	14	24632332	24632332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	IRF9	NM_006084	exon3	c.A338G	p.Q113R	TGTATCAGTTGCT	.	117.0	5.0	125.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
FERMT2	10979	hgsc.bcm.edu	hg19	14	53360052	53360052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	FERMT2	NM_001135000	exon4	c.A485G	p.E162G	AGTGCCTCATCTT	.	177.0	72.0	192.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
CRAMP1L	57585	hgsc.bcm.edu	hg19	16	1718163	1718163	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CRAMP1L	NM_020825	exon17	c.C3303T	p.I1101I	CTCCATCATTGAG	.	129.0	36.0	102.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
RPGRIP1L	23322	hgsc.bcm.edu	hg19	16	53636027	53636027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RPGRIP1L	NM_015272	exon27	c.G3909T	p.Q1303H	GACAGACTGGAGG	.	107.0	72.0	89.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
ELMO3	79767	hgsc.bcm.edu	hg19	16	67236330	67236330	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ELMO3	NM_024712	exon14	c.T1451G	p.M484R	CACCCATGTTCTT	.	239.0	22.0	203.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
CDK5RAP3	80279	hgsc.bcm.edu	hg19	17	46051766	46051766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CDK5RAP3	NM_176096	exon5	c.G286A	p.D96N	ACTCAGGATTGGC	.	144.0	15.0	143.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
APPBP2	10513	hgsc.bcm.edu	hg19	17	58525181	58525181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	APPBP2	NM_006380	exon13	c.G1519T	p.G507C	CCTCACCAAAAAG	.	149.0	62.0	145.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
TRAPPC8	22878	hgsc.bcm.edu	hg19	18	29488737	29488737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TRAPPC8	NM_014939	exon7	c.A1102C	p.I368L	GCCTAATTGTTTT	.	73.0	31.0	84.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
CNDP2	55748	hgsc.bcm.edu	hg19	18	72179734	72179734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CNDP2	NM_018235	exon7	c.C709A	p.H237N	TCGGTGCATGAGG	.	108.0	39.0	131.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF236	7776	hgsc.bcm.edu	hg19	18	74561610	74561610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZNF236	NM_007345	exon2	c.G178A	p.E60K	GATCACGAGCGAA	.	88.0	38.0	94.0	0.0	.	325	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1F	4542	hgsc.bcm.edu	hg19	19	8609279	8609279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MYO1F	NM_012335	exon14	c.G1426T	p.D476Y	TCTGGTCTGCTCC	.	49.0	24.0	55.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	hg19	19	13397703	13397703	+	Missense_Mutation	SNP	C	C	T	rs200850308	bycluster	TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CACNA1A	NM_001127221	exon20	c.G3170A	p.R1057H	TCTTGGCGGCCCA	.	54.0	8.0	69.0	0.0	.	715	.	.	.	weak	.	.	PASS	Atlas-SNP
ZNF780B	163131	hgsc.bcm.edu	hg19	19	40541550	40541550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZNF780B	NM_001005851	exon5	c.C1216A	p.Q406K	GGTGTTGAATAAG	.	176.0	79.0	190.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF320	162967	hgsc.bcm.edu	hg19	19	53384942	53384942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZNF320	NM_207333	exon4	c.T437C	p.L146S	AAATGCAAATGAA	.	185.0	80.0	218.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
NCAM2	4685	hgsc.bcm.edu	hg19	21	22656582	22656582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	NCAM2	NM_004540	exon3	c.G199T	p.V67L	CAGAGGGTAGTAG	.	70.0	24.0	71.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
BCL2L13	23786	hgsc.bcm.edu	hg19	22	18138590	18138590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	BCL2L13,NS,carcinoma,0,1	BCL2L13	NM_001270732	exon2	c.C113T	p.S38L	TTTCCTCACCCCA	.	34.0	33.0	82.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	hg19	X	123519705	123519705	+	Silent	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	NM_001163278	exon29	c.C5898A	p.T1966T	ATGCAGGGTCTGT	.	124.0	21.0	154.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZDHHC9	51114	hgsc.bcm.edu	hg19	X	128963040	128963040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZDHHC9	NM_001008222	exon3	c.C245A	p.T82K	AACAGTGTAGCCA	.	84.0	82.0	85.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
ATP6	0	hgsc.bcm.edu	hg19	MT	9084	9084	+	Silent	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	ENST00000361899	exon1	c.T558C	p.L186L	TAACCTTCCCTCT	.	8.0	6.0	7.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
AMBP	259	hgsc.bcm.edu	hg19	9	116837296	116837296	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	AMBP	NM_001633	exon3	c.282delG	p.T94fs	.	.	99.0	46.0	98.0	0.0	.	33	.	0.464646	0	none	.	.	PASS	Atlas-INDEL
RABGAP1	23637	hgsc.bcm.edu	hg19	9	125772734	125772738	+	Frame_Shift_Del	DEL	TTCAG	TTCAG	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	TTCAG	TTCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RABGAP1	NM_012197	exon11	c.1475_1479del	p.492_493del	.	.	71.0	25.0	73.0	0.0	.	164	.	0.352113	0	none	.	.	PASS	Atlas-INDEL
DHX57	90957	hgsc.bcm.edu	hg19	2	39030017	39030017	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	DHX57	NM_198963	exon23	c.3858delG	p.K1286fs	.	.	195.0	83.0	237.0	0.0	.	127	.	0.425641	0	none	.	.	PASS	Atlas-INDEL
ZC3H13	23091	hgsc.bcm.edu	hg19	13	46543501	46543502	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZC3H13	NM_015070	exon14	c.3178_3179insA	p.E1060fs	.	.	207.0	22.0	169.0	0.0	.	197	.	0.10628	0	none	.	.	PASS	Atlas-INDEL
MBIP	51562	hgsc.bcm.edu	hg19	14	36770005	36770006	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MBIP	NM_016586	exon8	c.913_914insA	p.V305fs	.	.	21.0	11.0	36.0	0.0	.	25	.	0.52381	0	none	.	.	PASS	Atlas-INDEL
STMN4	81551	hgsc.bcm.edu	hg19	8	27097566	27097566	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	STMN4	NM_030795	exon6	c.514delC	p.L172fs	.	.	173.0	76.0	186.0	0.0	.	28	.	0.439306	0	none	.	.	PASS	Atlas-INDEL
GBAS	2631	hgsc.bcm.edu	hg19	7	56045954	56045955	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	GBAS	NM_001483	exon2	c.227_228del	p.76_76del	.	.	148.0	80.0	187.0	0.0	.	16	.	0.540541	0	none	.	.	PASS	Atlas-INDEL
KIAA0825	285600	hgsc.bcm.edu	hg19	5	93856355	93856362	+	Frame_Shift_Del	DEL	AAATTTTT	AAATTTTT	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AAATTTTT	AAATTTTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	KIAA0825	NM_001145678	exon5	c.562_569del	p.188_190del	.	.	170.0	25.0	112.0	0.0	.	172	.	0.147059	0	none	.	.	PASS	Atlas-INDEL
ZER1	10444	hgsc.bcm.edu	hg19	9	131515779	131515779	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZER1	NM_006336	exon4	c.411delC	p.F137fs	.	.	57.0	26.0	77.0	0.0	.	49	.	0.45614	0	none	.	.	PASS	Atlas-INDEL
MRPL22	29093	hgsc.bcm.edu	hg19	5	154330411	154330411	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MRPL22	NM_014180	exon3	c.107delG	p.S36fs	.	.	184.0	125.0	128.0	0.0	.	18	.	0.679348	0	none	.	.	PASS	Atlas-INDEL
NF2	4771	hgsc.bcm.edu	hg19	22	30067890	30067905	+	Frame_Shift_Del	DEL	AGGCTGCTGCAGATGA	AGGCTGCTGCAGATGA	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AGGCTGCTGCAGATGA	AGGCTGCTGCAGATGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	NF2	NM_181832	exon11	c.1074_1089del	p.358_363del	.	.	38.0	22.0	87.0	0.0	.	1312	.	0.578947	0	none	.	.	PASS	Atlas-INDEL
CASP10	843	hgsc.bcm.edu	hg19	2	202073930	202073931	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CASP10	NM_032977	exon9	c.1059_1060del	p.353_354del	.	.	186.0	90.0	218.0	0.0	.	95	.	0.483871	0	none	.	.	PASS	Atlas-INDEL
CNTNAP4	85445	hgsc.bcm.edu	hg19	16	76587277	76587278	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CNTNAP4	NM_138994	exon21	c.3321_3322insGC	p.K1107fs	.	.	43.0	25.0	21.0	0.0	.	600	.	0.581395	0	none	.	.	PASS	Atlas-INDEL
RLF	6018	hgsc.bcm.edu	hg19	1	40705390	40705391	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RLF	NM_012421	exon8	c.5016_5017insT	p.L1672fs	.	.	103.0	54.0	130.0	0.0	.	152	.	0.524272	0	none	.	.	PASS	Atlas-INDEL
XIRP2	129446	hgsc.bcm.edu	hg19	2	168115244	168115247	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	TTTC	TTTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	XIRP2	NM_001199143	exon11	c.2286_2289del	p.762_763del	.	.	92.0	51.0	110.0	0.0	.	914	.	0.554348	0	none	.	.	PASS	Atlas-INDEL
SNX10	29887	hgsc.bcm.edu	hg19	7	26412183	26412200	+	Frame_Shift_Del	DEL	GGAATCCTGAAAAATAAT	GGAATCCTGAAAAATAAT	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	GGAATCCTGAAAAATAAT	GGAATCCTGAAAAATAAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	SNX10	NM_013322	exon7	c.596_821del	p.199_202del	.	.	154.0	45.0	190.0	0.0	.	19	.	0.292208	0	none	.	.	PASS	Atlas-INDEL
