Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
NCDN	23154	hgsc.bcm.edu	hg19	1	36029001	36029001	+	Silent	SNP	C	C	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	NCDN	NM_014284	exon5	c.C1584T	p.L528L	CAACCTCGTGGTC	.	52.0	22.0	51.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
KCNC4	3749	hgsc.bcm.edu	hg19	1	110768794	110768794	+	Missense_Mutation	SNP	C	C	T	rs200184574		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	KCNC4	NM_001039574	exon3	c.C1813T	p.R605W	AGTGTCCGGAAAG	.	77.0	36.0	66.0	0.0	.	113	.	.	.	weak	C|0.999;T|0.001	0.001	PASS	Atlas-SNP
AVPR1B	553	hgsc.bcm.edu	hg19	1	206225073	206225073	+	Silent	SNP	G	G	T	rs150659663	alternate_allele	TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	AVPR1B	NM_000707	exon1	c.G633T	p.P211P	TCTGCCGGTGACC	.	93.0	4.0	71.0	0.0	.	47	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
GRHL1	29841	hgsc.bcm.edu	hg19	2	10126281	10126281	+	Silent	SNP	A	A	G	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	GRHL1	NM_198182	exon9	c.A1140G	p.T380T	AAGCACAGATTTC	.	113.0	28.0	67.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
MATN3	4148	hgsc.bcm.edu	hg19	2	20212199	20212199	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	MATN3	NM_002381	exon1	c.C194G	p.T65S	TCGCTGGTCCCGG	.	107.0	26.0	162.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
PTCD3	55037	hgsc.bcm.edu	hg19	2	86348656	86348656	+	Missense_Mutation	SNP	A	A	G	rs200261667		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	PTCD3	NM_017952	exon8	c.A593G	p.Y198C	GTTACTATGGTGA	.	87.0	30.0	86.0	0.0	.	51	.	.	.	weak	.	.	PASS	Atlas-SNP
FAM178B	51252	hgsc.bcm.edu	hg19	2	97559675	97559675	+	Silent	SNP	C	C	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	FAM178B	NM_001122646	exon14	c.G1764A	p.E588E	GTCTAGCTCGGCA	.	40.0	6.0	37.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
CBLB	868	hgsc.bcm.edu	hg19	3	105459395	105459395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	CBLB	NM_170662	exon7	c.C926A	p.T309N	GGTATGGTCTGTA	.	72.0	17.0	67.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
HNRPDL	9987	hgsc.bcm.edu	hg19	4	83350691	83350691	+	Silent	SNP	C	C	T	rs370944367		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	HNRPDL	NM_031372	exon1	c.G153A	p.R51R	CCCCTGCCGGGCG	.	55.0	8.0	71.0	0.0	.	35	.	.	.	weak	.	.	PASS	Atlas-SNP
TRIML2	205860	hgsc.bcm.edu	hg19	4	189020257	189020257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	TRIML2	NM_173553	exon4	c.C403T	p.R135C	GGCTGCGGACCTG	.	73.0	26.0	89.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGA5	56110	hgsc.bcm.edu	hg19	5	140745680	140745680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	PCDHGA5	NM_032054	exon1	c.G1783A	p.D595N	GCGGTGGACAAAG	.	103.0	36.0	104.0	0.0	.	215	.	.	.	none	.	.	PASS	Atlas-SNP
DNPH1	10591	hgsc.bcm.edu	hg19	6	43193850	43193850	+	Silent	SNP	C	C	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	.	NM_006443	exon3	c.G297A	p.L99L	TACACCCAAGGAT	.	41.0	16.0	33.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CDC5L	988	hgsc.bcm.edu	hg19	6	44355567	44355567	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	CDC5L	NM_001253	exon1	c.C7T	p.R3X	ATGCCTCGAATTA	.	45.0	10.0	50.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
MAP3K4	4216	hgsc.bcm.edu	hg19	6	161512563	161512563	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	MAP3K4	NM_006724	exon12	c.T3126G	p.F1042L	CAATTTTGGATTT	.	140.0	6.0	151.0	0.0	.	364	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R9A	55607	hgsc.bcm.edu	hg19	7	94540403	94540403	+	Silent	SNP	T	T	G	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	PPP1R9A	NM_017650	exon2	c.T978G	p.A326A	TTGTGCTGAAAGT	.	188.0	57.0	121.0	0.0	.	264	.	.	.	none	.	.	PASS	Atlas-SNP
LAMB4	22798	hgsc.bcm.edu	hg19	7	107743597	107743597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	LAMB4	NM_007356	exon10	c.G1072A	p.V358M	CACACACGCCCCC	.	67.0	29.0	56.0	0.0	.	253	.	.	.	none	.	.	PASS	Atlas-SNP
CNOT4	4850	hgsc.bcm.edu	hg19	7	135095338	135095338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	CNOT4	NM_001190850	exon7	c.A748G	p.N250D	GAAAATTGGGATT	.	94.0	32.0	52.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	133899367	133899367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	TG	NM_003235	exon9	c.G1750T	p.A584S	CAACATGCTATCT	.	165.0	42.0	132.0	0.0	.	416	.	.	.	none	.	.	PASS	Atlas-SNP
TRAPPC9	83696	hgsc.bcm.edu	hg19	8	140743457	140743457	+	Silent	SNP	G	G	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	TRAPPC9	NM_031466	exon23	c.C3588A	p.G1196G	CGACTGGCCGGAC	.	111.0	22.0	68.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
UHRF2	115426	hgsc.bcm.edu	hg19	9	6420922	6420922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	UHRF2	NM_152896	exon2	c.G164T	p.G55V	AAAATGGATATAC	.	57.0	4.0	65.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
DDX31	64794	hgsc.bcm.edu	hg19	9	135545507	135545507	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	DDX31	NM_022779	exon1	c.A130T	p.S44C	CAAGACTACCGCG	.	69.0	31.0	62.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
PNPLA7	375775	hgsc.bcm.edu	hg19	9	140356049	140356049	+	Silent	SNP	G	G	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	PNPLA7	NM_001098537	exon33	c.C3780A	p.S1260S	CGTGAAGGAGGCG	.	41.0	15.0	50.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
LCOR	84458	hgsc.bcm.edu	hg19	10	98715228	98715228	+	Missense_Mutation	SNP	C	C	T	rs145573126		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	LCOR	NM_001170766	exon8	c.C851T	p.T284M	CACAAACGGAGAG	.	216.0	12.0	138.0	0.0	.	32	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1093105	1093105	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	MUC2	NM_002457	exon30	c.C4924G	p.P1642A	CCAACCCCAACAC	.	19.0	4.0	20.0	0.0	.	614	.	.	.	none	.	.	PASS	Atlas-SNP
CAND1	55832	hgsc.bcm.edu	hg19	12	67675700	67675700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	CAND1	NM_018448	exon2	c.A79G	p.T27A	ATGGCTACAAATG	.	69.0	20.0	51.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
PHLDA1	22822	hgsc.bcm.edu	hg19	12	76424606	76424606	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	PHLDA1	NM_007350	exon1	c.C916T	p.Q306X	GGGGCTGCTGCTG	.	37.0	11.0	25.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112601434	112601434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	.	NM_001109662	exon74	c.T12407C	p.I4136T	AGGGGGATGATGG	.	83.0	5.0	61.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
EP400	57634	hgsc.bcm.edu	hg19	12	132547084	132547084	+	Silent	SNP	G	G	A	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	EP400	NM_015409	exon47	c.G8172A	p.Q2724Q	GCAGCAGCAGCAA	.	110.0	8.0	78.0	0.0	.	370	.	.	.	none	.	.	PASS	Atlas-SNP
IPO4	79711	hgsc.bcm.edu	hg19	14	24653966	24653966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	IPO4	NM_024658	exon16	c.C1526T	p.T509M	GCAGCCGTAGCTG	.	130.0	42.0	105.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
FLVCR2	55640	hgsc.bcm.edu	hg19	14	76107632	76107632	+	Silent	SNP	C	C	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	FLVCR2	NM_017791	exon8	c.C1449T	p.L483L	AGCCCTCACTGGT	.	78.0	20.0	54.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	hg19	14	96752216	96752216	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	ATG2B	NM_018036	exon42	c.C6113G	p.A2038G	ACCACTGCCGGAG	.	82.0	25.0	84.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
FRMD5	84978	hgsc.bcm.edu	hg19	15	44166102	44166102	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	FRMD5	NM_032892	exon14	c.G1694C	p.S565T	AGCAGGCTCACCA	.	103.0	41.0	86.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
MAN2C1	4123	hgsc.bcm.edu	hg19	15	75653705	75653705	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	MAN2C1	NM_001256494	exon11	c.G1236A	p.W412X	GCCCTCCCAGAAA	.	80.0	34.0	80.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
KRT27	342574	hgsc.bcm.edu	hg19	17	38935785	38935785	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	KRT27	NM_181537	exon5	c.T941A	p.L314H	ATCTCAAGGGTTT	.	182.0	37.0	123.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP17-1	83902	hgsc.bcm.edu	hg19	17	39471774	39471774	+	Silent	SNP	G	G	A	rs368577794		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	KRTAP17-1,colon,carcinoma,0,3	KRTAP17-1	NM_031964	exon1	c.C129T	p.C43C	GCCCCCGCAGCCA	.	70.0	8.0	34.0	0.0	.	14	.	.	.	weak	.	.	PASS	Atlas-SNP
CDR2L	30850	hgsc.bcm.edu	hg19	17	72998179	72998179	+	Missense_Mutation	SNP	G	G	A	rs139957978		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	.	NM_014603	exon4	c.G362A	p.R121H	TTGAGCGCCTCCA	.	139.0	30.0	95.0	0.0	.	.	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
TLE6	79816	hgsc.bcm.edu	hg19	19	2987356	2987356	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	TLE6	NM_001143986	exon8	c.C544T	p.Q182X	ACAGAGCAGGCAC	.	41.0	13.0	56.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
ELOF1	84337	hgsc.bcm.edu	hg19	19	11664884	11664884	+	Silent	SNP	G	G	A	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	ELOF1	NM_032377	exon3	c.C129T	p.R43R	GGTGTTGCGGGCA	.	120.0	44.0	132.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
BPIFB3	359710	hgsc.bcm.edu	hg19	20	31644491	31644491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	.	NM_182658	exon2	c.G268A	p.E90K	GTTGTCGAGGAGC	.	48.0	17.0	37.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CCT8L2	150160	hgsc.bcm.edu	hg19	22	17072541	17072541	+	Silent	SNP	G	G	A	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	CCT8L2,right_upper_lobe,carcinoma,0,1	CCT8L2	NM_014406	exon1	c.C900T	p.D300D	CTCCTCGTCGACC	.	78.0	40.0	157.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53616526	53616526	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	HUWE1	NM_031407	exon36	c.T4442A	p.L1481Q	TGCTTCAGAATCA	.	61.0	21.0	65.0	0.0	.	724	.	.	.	none	.	.	PASS	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66766365	66766365	+	Silent	SNP	C	C	T	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	AR	NM_000044	exon1	c.C1377T	p.G459G	CGGCGGCGGCGGC	.	181.0	20.0	256.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
PGAM4	441531	hgsc.bcm.edu	hg19	X	77225038	77225038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	PGAM4	NM_001029891	exon1	c.C98T	p.A33V	TGGCCCGCCGGGC	.	154.0	51.0	158.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
NRK	203447	hgsc.bcm.edu	hg19	X	105153848	105153848	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	NRK	NM_198465	exon13	c.G2215C	p.E739Q	CAGCATGAGGAAG	.	386.0	119.0	390.0	0.0	.	321	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP29	9411	hgsc.bcm.edu	hg19	1	94668545	94668554	+	Frame_Shift_Del	DEL	CAAGTAGAGG	CAAGTAGAGG	-	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	CAAGTAGAGG	CAAGTAGAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	ARHGAP29	NM_004815	exon10	c.875_884del	p.292_295del	.	.	77.0	11.0	71.0	0.0	.	132	.	0.142857	0	none	.	.	PASS	Atlas-INDEL
IVNS1ABP	10625	hgsc.bcm.edu	hg19	1	185267408	185267411	+	Frame_Shift_Del	DEL	ACAA	ACAA	-	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	ACAA	ACAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	IVNS1ABP	NM_006469	exon15	c.1686_1689del	p.562_563del	.	.	104.0	30.0	88.0	0.0	.	80	.	0.288462	0	none	.	.	PASS	Atlas-Indel,Pindel
BICC1	80114	hgsc.bcm.edu	hg19	10	60566346	60566347	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	BICC1	NM_001080512	exon16	c.2184_2185insTT	p.A728fs	.	.	196.0	43.0	148.0	0.0	.	121	.	0.219388	0	none	.	.	PASS	Atlas-Indel,Pindel
ATP2B3	492	hgsc.bcm.edu	hg19	X	152826209	152826211	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-F9-A8NY-01A-11D-A35Z-10	TCGA-F9-A8NY-10A-01D-A35Z-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af2f02ad-e74d-4e56-98c2-b25edf27b998	49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd	.	ATP2B3	NM_001001344	exon17	c.2914_2916del	p.972_972del	.	.	129.0	50.0	143.0	0.0	.	552	.	0.387597	0	none	.	.	PASS	Atlas-Indel,Pindel
