Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
RPL22	6146	hgsc.bcm.edu	hg19	1	6246873	6246873	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RPL22	NM_000983	exon4	c.T246A	p.Y82X	TTTCAAATACCTG	.	81.0	17.0	69.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
ARID1A	8289	hgsc.bcm.edu	hg19	1	27094329	27094329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ARID1A	NM_006015	exon11	c.G3037A	p.E1013K	TTGTATGAGCTGG	.	142.0	32.0	159.0	0.0	.	842	.	.	.	none	.	.	PASS	Atlas-SNP
ADAR	103	hgsc.bcm.edu	hg19	1	154574720	154574720	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ADAR	NM_015840	exon2	c.T398A	p.L133Q	ATACTCAGTTCCT	.	102.0	25.0	150.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
FCRL4	83417	hgsc.bcm.edu	hg19	1	157559028	157559028	+	Silent	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	FCRL4	NM_031282	exon3	c.A273G	p.P91P	ACTTCGTGGGGAG	.	165.0	32.0	154.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
MPZL1	9019	hgsc.bcm.edu	hg19	1	167745333	167745333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	MPZL1	NM_003953	exon5	c.A638C	p.K213T	CAGTTAAGCAGGC	.	93.0	12.0	99.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
CACYBP	27101	hgsc.bcm.edu	hg19	1	174979129	174979129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	CACYBP,NS,carcinoma,0,1	CACYBP	NM_014412	exon6	c.G601T	p.D201Y	TATGAAGATGGAG	.	68.0	17.0	60.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
NAV1	89796	hgsc.bcm.edu	hg19	1	201762968	201762968	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	NAV1	NM_020443	exon14	c.C3370G	p.R1124G	ACATCCCGCCTGC	.	99.0	5.0	88.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
XDH	7498	hgsc.bcm.edu	hg19	2	31595113	31595113	+	Silent	SNP	G	G	T	rs201668777	by1000genomes;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	XDH	NM_000379	exon17	c.C1837A	p.R613R	GGGCCCGGGTGCT	.	252.0	11.0	266.0	0.0	.	191	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215865500	215865500	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ABCA12	NM_173076	exon22	c.A3108C	p.Q1036H	TCCAGTTTGCAAT	.	183.0	41.0	166.0	0.0	.	368	.	.	.	none	.	.	PASS	Atlas-SNP
C2orf62	375307	hgsc.bcm.edu	hg19	2	219222364	219222364	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	C2orf62	NM_198559	exon3	c.C226T	p.Q76X	AAATACCAGGAAA	.	93.0	16.0	103.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A38	54977	hgsc.bcm.edu	hg19	3	39431018	39431018	+	Silent	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	SLC25A38,colon,carcinoma,0,1	SLC25A38	NM_017875	exon2	c.C102T	p.G34G	GTGTGGCTCCATC	.	116.0	27.0	126.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
TNFSF10	8743	hgsc.bcm.edu	hg19	3	172232704	172232704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	TNFSF10	NM_003810	exon2	c.A217G	p.M73V	TGTTCATACTCTC	.	176.0	41.0	130.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
ACOX3	8310	hgsc.bcm.edu	hg19	4	8372681	8372681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ACOX3	NM_003501	exon17	c.C1937T	p.P646L	TCAGGAGGAGCGA	.	59.0	12.0	68.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
CENPC1	1060	hgsc.bcm.edu	hg19	4	68385012	68385012	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	CENPC1	NM_001812	exon6	c.G540C	p.K180N	CTCTCTCTTTTGG	.	138.0	36.0	106.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
GC	2638	hgsc.bcm.edu	hg19	4	72629625	72629625	+	Nonsense_Mutation	SNP	C	C	A	rs371509305	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	GC	NM_001204307	exon6	c.G559T	p.G187X	CTTGTCCGTAATT	.	134.0	6.0	131.0	0.0	.	132	.	.	.	alt	.	.	PASS	Atlas-SNP
RNF150	57484	hgsc.bcm.edu	hg19	4	141832440	141832440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RNF150	NM_020724	exon6	c.C1056G	p.N352K	GATCTGGTTGGTG	.	111.0	14.0	105.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
SCAND3	114821	hgsc.bcm.edu	hg19	6	28554157	28554157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	SCAND3,NS,carcinoma,0,1	SCAND3	NM_052923	exon1	c.G338T	p.R113L	TGCTCCCGCACCC	.	236.0	11.0	267.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
LMBRD1	55788	hgsc.bcm.edu	hg19	6	70462182	70462182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	LMBRD1	NM_018368	exon4	c.A374G	p.E125G	TCCTTTTCTTCAT	.	77.0	16.0	71.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152673335	152673335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SYNE1	NM_182961	exon70	c.A11407G	p.T3803A	GGACAGTGCTGGT	.	261.0	44.0	217.0	0.0	.	3227	.	.	.	none	.	.	PASS	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47898372	47898372	+	Missense_Mutation	SNP	C	C	A	rs146609164	byfrequency;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	PKD1L1	NM_138295	exon27	c.G4261T	p.G1421C	TGAGACCGATGAG	.	121.0	7.0	98.0	0.0	.	328	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
TMEM248	55069	hgsc.bcm.edu	hg19	7	66410208	66410208	+	Silent	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	.	NM_017994	exon3	c.T405C	p.H135H	CACCCATCTGTAC	.	247.0	43.0	244.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ING3	54556	hgsc.bcm.edu	hg19	7	120595620	120595620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ING3	NM_019071	exon4	c.A209G	p.Y70C	ACTACTATAAAGC	.	36.0	5.0	30.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
HIPK2	28996	hgsc.bcm.edu	hg19	7	139416356	139416356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	HIPK2	NM_022740	exon2	c.G478T	p.G160W	TGGCCCCGCTTGC	.	194.0	8.0	192.0	0.0	.	192	.	.	.	none	.	.	PASS	Atlas-SNP
MCPH1	79648	hgsc.bcm.edu	hg19	8	6302006	6302006	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	MCPH1	NM_001172574	exon8	c.A763T	p.I255F	GGATCCATTAATG	.	89.0	23.0	89.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
IKBKB	3551	hgsc.bcm.edu	hg19	8	42173753	42173753	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	IKBKB	NM_001556	exon10	c.T826A	p.W276R	GAGAAGTGGCTGC	.	48.0	10.0	68.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
CYP7A1	1581	hgsc.bcm.edu	hg19	8	59409487	59409487	+	Missense_Mutation	SNP	C	C	A	rs201046553	by1000genomes;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	CYP7A1	NM_000780	exon3	c.G584T	p.R195L	GTGTCCCGCCTTG	.	176.0	9.0	163.0	0.0	.	76	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
FBXL6	26233	hgsc.bcm.edu	hg19	8	145579793	145579793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	FBXL6	NM_012162	exon8	c.A1307G	p.Q436R	CACTTCTGGGTCA	.	156.0	30.0	181.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
KIN	22944	hgsc.bcm.edu	hg19	10	7825098	7825098	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	KIN	NM_012311	exon2	c.G155C	p.R52T	AGTTGTCTCTGAT	.	61.0	8.0	49.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
PLCE1	51196	hgsc.bcm.edu	hg19	10	95849076	95849076	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	PLCE1	NM_001165979	exon1	c.A225G	p.V75V	TGAGGTACCCAAT	.	169.0	66.0	198.0	0.0	.	543	.	.	.	none	.	.	PASS	Atlas-SNP
BEST1	7439	hgsc.bcm.edu	hg19	11	61730354	61730354	+	Silent	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	BEST1	NM_004183	exon10	c.C1728T	p.A576A	TTGGGCCTTGGAA	.	91.0	13.0	103.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
PARP11	57097	hgsc.bcm.edu	hg19	12	3921402	3921402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	PARP11,NS,malignant_melanoma,0,1	PARP11	NM_020367	exon8	c.G904T	p.G302W	AGCTCCCGTCTTT	.	151.0	9.0	118.0	2.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
ABCC9	10060	hgsc.bcm.edu	hg19	12	21962862	21962862	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ABCC9	NM_005691	exon35	c.C4239T	p.C1413C	ATCTGTGCATTTG	.	127.0	24.0	94.0	0.0	.	411	.	.	.	none	.	.	PASS	Atlas-SNP
C2CD5	9847	hgsc.bcm.edu	hg19	12	22666235	22666235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	.	NM_014802	exon9	c.A1031G	p.E344G	CTCTGTTCCAACG	.	187.0	31.0	163.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CAPRIN2	65981	hgsc.bcm.edu	hg19	12	30886574	30886574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	CAPRIN2	NM_023925	exon5	c.T881C	p.V294A	GTTCCTACCACTG	.	219.0	13.0	200.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46246367	46246367	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ARID2	NM_152641	exon15	c.C4461A	p.P1487P	AGTTCCCGACTCA	.	172.0	8.0	171.0	0.0	.	311	.	.	.	none	.	.	PASS	Atlas-SNP
KRT85	3891	hgsc.bcm.edu	hg19	12	52761009	52761009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	KRT85	NM_002283	exon1	c.T181C	p.S61P	CGCAGGAGCCCAG	.	58.0	11.0	79.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
SYCP3	50511	hgsc.bcm.edu	hg19	12	102127436	102127436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SYCP3	NM_001177949	exon6	c.G370C	p.E124Q	AATATTCTTGGTT	.	89.0	12.0	73.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
USPL1	10208	hgsc.bcm.edu	hg19	13	31233386	31233386	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	USPL1	NM_005800	exon9	c.A3172C	p.K1058Q	CCGATGAAGACTG	.	110.0	20.0	92.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
ITM2B	9445	hgsc.bcm.edu	hg19	13	48833064	48833064	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ITM2B	NM_021999	exon5	c.A696G	p.Q232Q	ACTGCAACGCAGA	.	83.0	13.0	54.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
BTBD7	55727	hgsc.bcm.edu	hg19	14	93708871	93708871	+	Silent	SNP	G	G	T	rs145129249	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	BTBD7	NM_001002860	exon11	c.C3147A	p.T1049T	TGGACCGGTACTA	.	176.0	8.0	251.0	0.0	.	112	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
EDC4	23644	hgsc.bcm.edu	hg19	16	67910484	67910484	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	EDC4	NM_014329	exon3	c.G333A	p.K111K	AAGCAAGGCCCGG	.	78.0	15.0	71.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
GAN	8139	hgsc.bcm.edu	hg19	16	81388211	81388211	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	GAN	NM_022041	exon3	c.C484A	p.R162R	CATTTCCGAGACG	.	192.0	8.0	165.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
GLP2R	9340	hgsc.bcm.edu	hg19	17	9764494	9764494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	GLP2R	NM_004246	exon8	c.C964A	p.R322S	TTCGCCCGTGCAC	.	245.0	10.0	227.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
BRCA1	672	hgsc.bcm.edu	hg19	17	41244817	41244817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	BRCA1	NM_007300	exon10	c.G2731A	p.G911R	TCTTTCCTTGATT	.	146.0	24.0	145.0	0.0	.	304	.	.	.	none	.	.	PASS	Atlas-SNP
ABCC3	8714	hgsc.bcm.edu	hg19	17	48735832	48735832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	ABCC3_ENST00000427699,rectum,carcinoma,0,2	ABCC3	NM_003786	exon6	c.C649A	p.R217S	CTCTCCCGCCTGT	.	282.0	13.0	223.0	2.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
MSI2	124540	hgsc.bcm.edu	hg19	17	55754379	55754379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	MSI2	NM_138962	exon13	c.G977A	p.G326E	CAAATGGATACCA	.	252.0	80.0	173.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
EXOC7	23265	hgsc.bcm.edu	hg19	17	74081426	74081426	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	EXOC7	NM_001145297	exon16	c.A1834T	p.I612F	GCTCAATGTGCTC	.	40.0	14.0	30.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
APCDD1	147495	hgsc.bcm.edu	hg19	18	10487626	10487626	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	APCDD1	NM_153000	exon5	c.C1136G	p.A379G	CCACAGCCTCACT	.	95.0	15.0	135.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
ST8SIA5	29906	hgsc.bcm.edu	hg19	18	44284579	44284579	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ST8SIA5	NM_013305	exon2	c.C180A	p.C60X	CTCCAGGCATCTT	.	317.0	13.0	286.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
VAV1	7409	hgsc.bcm.edu	hg19	19	6833546	6833546	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	VAV1	NM_005428	exon17	c.T1618G	p.F540V	GGTACCTTCTATC	.	203.0	25.0	167.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF132	7691	hgsc.bcm.edu	hg19	19	58945194	58945194	+	Silent	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ZNF132	NM_003433	exon3	c.A1617T	p.G539G	CTTTTCTCCAGTG	.	112.0	22.0	107.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
SEC23B	10483	hgsc.bcm.edu	hg19	20	18496315	18496315	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SEC23B	NM_032985	exon4	c.A301T	p.I101L	GGAGGCATATCTG	.	102.0	14.0	103.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
TRAF5	7188	hgsc.bcm.edu	hg19	1	211545951	211545952	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	TRAF5	NM_145759	exon11	c.1581_1582insC	p.H527fs	.	.	118.0	20.0	118.0	0.0	.	64	.	0.169492	0	none	.	.	PASS	Atlas-INDEL
SP100	6672	hgsc.bcm.edu	hg19	2	231338157	231338157	+	Splice_Site	DEL	T	T	-	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SP100	NM_003113	exon16	c.1546+1T>-	.	.	.	135.0	23.0	126.0	0.0	.	167	.	0.17037	0	none	.	.	PASS	Atlas-INDEL
TEKT1	83659	hgsc.bcm.edu	hg19	17	6718552	6718553	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	TEKT1	NM_053285	exon5	c.559_560insT	p.I187fs	.	.	263.0	37.0	209.0	0.0	.	49	.	0.140684	0	none	.	.	PASS	Atlas-INDEL
