Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ZSCAN20	7579	hgsc.bcm.edu	hg19	1	33960785	33960785	+	Silent	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZSCAN20	NM_145238	exon8	c.C2841T	p.I947I	GCTCATCACACAC	.	39.0	36.0	108.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
URB2	9816	hgsc.bcm.edu	hg19	1	229770863	229770863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	URB2	NM_014777	exon4	c.A503G	p.Q168R	TAGCCCAGTTGTT	.	26.0	21.0	105.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
OR2T3	343173	hgsc.bcm.edu	hg19	1	248637423	248637423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	OR2T3	NM_001005495	exon1	c.G772T	p.G258C	CTCTTCGGTGCTT	.	392.0	20.0	647.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
ROCK2	9475	hgsc.bcm.edu	hg19	2	11361482	11361482	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	ROCK2_ENST00000315872,NS,carcinoma,0,2	ROCK2	NM_004850	exon9	c.G1101T	p.T367T	AGCTGCCGCTATT	.	145.0	7.0	137.0	0.0	.	224	.	.	.	none	.	.	PASS	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21229324	21229324	+	Silent	SNP	G	G	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	APOB,NS,carcinoma,0,1	APOB	NM_000384	exon26	c.C10416A	p.T3472T	TTTAGCGGTAGAG	.	135.0	12.0	166.0	0.0	.	761	.	.	.	none	.	.	PASS	Atlas-SNP
GFPT1	2673	hgsc.bcm.edu	hg19	2	69553334	69553334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GFPT1	NM_001244710	exon20	c.T2087A	p.V696E	ACAGTCACAGATT	.	60.0	22.0	46.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	hg19	2	133541732	133541732	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	NCKAP5	NM_207363	exon14	c.G2652C	p.W884C	CTGGACCCAGTCC	.	85.0	52.0	174.0	0.0	.	322	.	.	.	none	.	.	PASS	Atlas-SNP
ITM2C	81618	hgsc.bcm.edu	hg19	2	231741583	231741583	+	Silent	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ITM2C	NM_030926	exon4	c.G462C	p.A154A	GACTGCGTACCAT	.	107.0	50.0	169.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
CCR2	729230	hgsc.bcm.edu	hg19	3	46399085	46399085	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	CCR2	NM_001123041	exon2	c.T67A	p.F23I	ACCACCTTTTTTG	.	280.0	136.0	280.0	1.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
SLC26A6	65010	hgsc.bcm.edu	hg19	3	48668741	48668741	+	Splice_Site	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SLC26A6	NM_001040454	exon8	c.841-2A>G	.	ATGAGCTGTGGGA	.	13.0	8.0	24.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
ZMYND10	51364	hgsc.bcm.edu	hg19	3	50379017	50379017	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZMYND10	NM_015896	exon11	c.G1235A	p.W412X	CAATACCACTCAT	.	78.0	30.0	126.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
FAM208A	23272	hgsc.bcm.edu	hg19	3	56658883	56658883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FAM208A	NM_001112736	exon22	c.C4291G	p.Q1431E	GTTGCTGTATGTT	.	147.0	58.0	121.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
ACOX2	8309	hgsc.bcm.edu	hg19	3	58517532	58517532	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ACOX2	NM_003500	exon6	c.G591T	p.R197R	GGCTGACCGTCCC	.	34.0	18.0	79.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	hg19	3	89521663	89521663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	EPHA3	NM_005233	exon16	c.C2740A	p.R914S	ACCTTCCGCACAA	.	249.0	16.0	250.0	0.0	.	501	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB11	27107	hgsc.bcm.edu	hg19	3	101370105	101370105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZBTB11	NM_014415	exon11	c.G3067A	p.V1023I	CTAATACATAATT	.	168.0	70.0	181.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113376409	113376409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	KIAA2018	NM_001009899	exon7	c.A4120G	p.M1374V	TGACCATCATTTG	.	96.0	38.0	112.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
FSTL1	11167	hgsc.bcm.edu	hg19	3	120122159	120122159	+	Silent	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FSTL1	NM_007085	exon8	c.T624C	p.N208N	ATCAGCATTTTCA	.	156.0	65.0	132.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
ETV5	2119	hgsc.bcm.edu	hg19	3	185766603	185766603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ETV5	NM_004454	exon13	c.C1358T	p.A453V	AAGAGGGCATCTG	.	43.0	25.0	73.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A4	8671	hgsc.bcm.edu	hg19	4	72332250	72332250	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SLC4A4	NM_001098484	exon13	c.C1587A	p.T529T	CAGCACCGGACCT	.	178.0	11.0	183.0	0.0	.	269	.	.	.	none	.	.	PASS	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114177035	114177035	+	Missense_Mutation	SNP	C	C	A	rs143043717	bycluster;alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	ANK2,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	ANK2	NM_001148	exon11	c.C1135A	p.R379S	CACTACCGTGTAA	.	198.0	13.0	291.0	0.0	.	576	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126369689	126369689	+	Silent	SNP	G	G	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	FAT4_ENST00000394329,NS,carcinoma,0,2	FAT4	NM_024582	exon9	c.G7518T	p.S2506S	TCTTTCGGGTAGA	.	165.0	8.0	123.0	0.0	.	1752	.	.	.	none	.	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187539870	187539870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FAT1	NM_005245	exon10	c.G7870T	p.D2624Y	CCTCATCGGCATC	.	84.0	37.0	79.0	0.0	.	500	.	.	.	none	.	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187630250	187630250	+	Silent	SNP	C	C	A	rs374978739	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FAT1	NM_005245	exon2	c.G732T	p.T244T	GTGCACCGTTAGC	.	226.0	11.0	277.0	0.0	.	500	.	.	.	alt	.	.	PASS	Atlas-SNP
PCDHB4	56131	hgsc.bcm.edu	hg19	5	140502471	140502471	+	Silent	SNP	G	G	T	rs375984500	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PCDHB4	NM_018938	exon1	c.G891T	p.T297T	AGTCACGGGAGAA	.	275.0	14.0	239.0	0.0	.	177	.	.	.	alt	.	.	PASS	Atlas-SNP
ECT2L	345930	hgsc.bcm.edu	hg19	6	139167797	139167797	+	Silent	SNP	C	C	A	rs376022291	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ECT2L	NM_001195037	exon7	c.C886A	p.R296R	TCATCCCGGATTC	.	497.0	20.0	395.0	0.0	.	75	.	.	.	alt	.	.	PASS	Atlas-SNP
AKAP12	9590	hgsc.bcm.edu	hg19	6	151626981	151626981	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	AKAP12	NM_005100	exon3	c.C262G	p.L88V	GGAGCCCTGAACG	.	34.0	13.0	48.0	0.0	.	170	.	.	.	none	.	.	PASS	Atlas-SNP
PGAM2	5224	hgsc.bcm.edu	hg19	7	44105125	44105125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PGAM2	NM_000290	exon1	c.G4T	p.A2S	GAGTGGCCATGGT	.	107.0	38.0	136.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
TMED4	222068	hgsc.bcm.edu	hg19	7	44621125	44621125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	TMED4	NM_182547	exon3	c.T310C	p.S104P	TGTGGGAGGTGAA	.	76.0	41.0	85.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
ADAM28	10863	hgsc.bcm.edu	hg19	8	24209520	24209520	+	Silent	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ADAM28	NM_014265	exon21	c.T2199C	p.H733H	GCCCCATGTGTAT	.	135.0	56.0	116.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
TTI2	80185	hgsc.bcm.edu	hg19	8	33369626	33369626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	.	NM_001265581	exon2	c.G506T	p.R169L	ACTTCCCGAGATC	.	173.0	12.0	260.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
XKR4	114786	hgsc.bcm.edu	hg19	8	56435874	56435874	+	Silent	SNP	C	C	G	rs4263738	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	XKR4	NM_052898	exon3	c.C1041G	p.A347A	CCTGGCCTGGGCC	.	39.0	19.0	78.0	0.0	.	104	.	.	.	alt	.	.	PASS	Atlas-SNP
HNF4G	3174	hgsc.bcm.edu	hg19	8	76465335	76465335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	HNF4G	NM_004133	exon5	c.T518C	p.I173T	CAAGTATTGGTGA	.	120.0	58.0	83.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
PTK2	5747	hgsc.bcm.edu	hg19	8	141745382	141745382	+	Silent	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PTK2	NM_005607	exon22	c.G2064A	p.R688R	CCTGGGCCGCCTG	.	29.0	15.0	41.0	0.0	.	311	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D13	54662	hgsc.bcm.edu	hg19	9	131565636	131565636	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	TBC1D13	NM_018201	exon8	c.C651G	p.I217M	GTTCATCTACGCC	.	65.0	34.0	109.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
MCM10	55388	hgsc.bcm.edu	hg19	10	13222572	13222572	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	MCM10	NM_182751	exon7	c.A898C	p.I300L	GGGGTTATATTGA	.	192.0	88.0	182.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
C10orf68	79741	hgsc.bcm.edu	hg19	10	33134884	33134884	+	Silent	SNP	C	C	A	rs201575874	by1000genomes;alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	C10orf68	NM_024688	exon16	c.C1330A	p.R444R	AGTCACCGAGGTA	.	297.0	14.0	219.0	0.0	.	75	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
BMS1	9790	hgsc.bcm.edu	hg19	10	43315762	43315762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	BMS1,colon,carcinoma,-1,1	BMS1	NM_014753	exon16	c.C2659A	p.R887S	TACGTCCGCATTG	.	130.0	7.0	158.0	0.0	.	132	.	.	.	none	.	.	PASS	Atlas-SNP
PCBD1	5092	hgsc.bcm.edu	hg19	10	72643783	72643783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PCBD1	NM_000281	exon4	c.A239G	p.H80R	CACTCATGGGTGC	.	61.0	20.0	62.0	0.0	.	8	.	.	.	none	.	.	PASS	Atlas-SNP
TSG101	7251	hgsc.bcm.edu	hg19	11	18505434	18505434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	TSG101,NS,carcinoma,0,1	TSG101	NM_006292	exon8	c.C826A	p.R276S	CTAAACGGGTAAC	.	291.0	12.0	321.0	1.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
OR4C13	283092	hgsc.bcm.edu	hg19	11	49974076	49974076	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	OR4C13	NM_001001955	exon1	c.C102A	p.I34I	CTACATCAACGCC	.	307.0	35.0	299.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92086947	92086947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	FAT3_ENST00000409404,right_upper_lobe,carcinoma,0,2	FAT3	NM_001008781	exon1	c.C1669A	p.R557S	CCATACCGCCATG	.	149.0	7.0	153.0	0.0	.	1822	.	.	.	none	.	.	PASS	Atlas-SNP
HEBP1	50865	hgsc.bcm.edu	hg19	12	13140120	13140120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	HEBP1	NM_015987	exon3	c.A364G	p.I122V	CCTCAATCTTAAC	.	187.0	75.0	211.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
PPFIBP1	8496	hgsc.bcm.edu	hg19	12	27809595	27809595	+	Missense_Mutation	SNP	A	A	C	rs369414467	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PPFIBP1	NM_177444	exon10	c.A836C	p.E279A	AATCTGAAGTAAA	.	176.0	79.0	113.0	0.0	.	153	.	.	.	alt	.	.	PASS	Atlas-SNP
GPD1	2819	hgsc.bcm.edu	hg19	12	50503242	50503242	+	Nonsense_Mutation	SNP	C	C	G	rs116736822	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GPD1	NM_005276	exon8	c.C990G	p.Y330X	GTGCTACGAGGGC	.	87.0	26.0	135.0	0.0	.	23	.	.	.	alt	C|0.998;T|0.002	.	PASS	Atlas-SNP
LRIG3	121227	hgsc.bcm.edu	hg19	12	59271290	59271290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	LRIG3	NM_153377	exon15	c.G2428T	p.V810F	TCACGACACCCAC	.	61.0	39.0	98.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
PLXNC1	10154	hgsc.bcm.edu	hg19	12	94613897	94613897	+	Silent	SNP	C	C	A	rs146510015	bycluster;alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	PLXNC1,NS,carcinoma,0,1	PLXNC1	NM_005761	exon6	c.C1660A	p.R554R	CCCAACCGGACCT	.	197.0	15.0	338.0	0.0	.	135	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
ANKRD13A	88455	hgsc.bcm.edu	hg19	12	110457067	110457067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ANKRD13A	NM_033121	exon6	c.T668C	p.V223A	GGGAAGTTGAGCG	.	92.0	39.0	114.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
SBNO1	55206	hgsc.bcm.edu	hg19	12	123780521	123780521	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SBNO1	NM_001167856	exon31	c.G4116T	p.A1372A	TTGGACCGCAAGC	.	297.0	15.0	367.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM260	0	hgsc.bcm.edu	hg19	14	57075923	57075923	+	Silent	SNP	C	C	A	rs140983222	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	.	NM_017799	exon6	c.C736A	p.R246R	CACGCCCGGTGGA	.	311.0	14.0	497.0	0.0	.	.	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
SIX4	51804	hgsc.bcm.edu	hg19	14	61190290	61190290	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SIX4	NM_017420	exon1	c.T503G	p.I168S	TCGAGGATGCTGT	.	20.0	9.0	26.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
IREB2	3658	hgsc.bcm.edu	hg19	15	78765688	78765688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	IREB2	NM_004136	exon8	c.G988A	p.V330I	CCTTTTGTTACAT	.	106.0	48.0	115.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
STX4	6810	hgsc.bcm.edu	hg19	16	31046334	31046334	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	STX4	NM_004604	exon5	c.C351A	p.S117S	TAACTCCGTCAAC	.	220.0	9.0	169.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
CES3	23491	hgsc.bcm.edu	hg19	16	67000741	67000741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	CES3	NM_024922	exon8	c.C1035A	p.N345K	CAACAACCATGAG	.	223.0	85.0	248.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
FAM65A	79567	hgsc.bcm.edu	hg19	16	67576026	67576026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FAM65A	NM_001193523	exon13	c.G1397A	p.R466Q	ACAGTCGGACTCT	.	155.0	35.0	139.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
CHMP1A	5119	hgsc.bcm.edu	hg19	16	89717999	89717999	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	CHMP1A	NM_002768	exon3	c.C83G	p.A28G	TGCTCCGCCTTGG	.	75.0	43.0	89.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	hg19	16	89874755	89874755	+	Silent	SNP	C	C	A	rs143314367	byfrequency;alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FANCA	NM_000135	exon6	c.G543T	p.A181A	CCACACCGCTTCA	.	368.0	15.0	206.0	0.0	.	99	.	.	.	alt	C|0.999;T|0.001	.	PASS	Atlas-SNP
SPAG5	10615	hgsc.bcm.edu	hg19	17	26911492	26911492	+	Missense_Mutation	SNP	C	C	A	rs140086700	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SPAG5	NM_006461	exon12	c.G2168T	p.R723L	TGAGCCCGGAGAT	.	220.0	10.0	231.0	0.0	.	92	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
ZNF207	7756	hgsc.bcm.edu	hg19	17	30696350	30696350	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZNF207	NM_001098507	exon11	c.A1201T	p.N401Y	CAACGTAATCTTC	.	96.0	48.0	117.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
PPM1D	8493	hgsc.bcm.edu	hg19	17	58740837	58740837	+	Missense_Mutation	SNP	G	G	A	rs200809297		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PPM1D	NM_003620	exon6	c.G1742A	p.R581Q	CCATGCGACGCAG	.	104.0	52.0	109.0	0.0	.	50	.	.	.	weak	G|0.999;A|0.001	0.001	PASS	Atlas-SNP
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9275635	9275635	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	ANKRD12,NS,carcinoma,0,1	ANKRD12	NM_015208	exon11	c.C5877A	p.A1959A	GGATGCCGAAGTA	.	247.0	12.0	146.0	2.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
SMAD7	4092	hgsc.bcm.edu	hg19	18	46447887	46447887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SMAD7	NM_005904	exon4	c.G1136A	p.R379Q	TTGGGCCGCTGCA	.	66.0	25.0	91.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
SALL3	27164	hgsc.bcm.edu	hg19	18	76755171	76755171	+	Missense_Mutation	SNP	G	G	C	rs371088522	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SALL3	NM_171999	exon2	c.G3180C	p.M1060I	CACCATGATCAAA	.	100.0	4.0	119.0	0.0	.	162	.	.	.	alt	.	.	PASS	Atlas-SNP
KCNN1	3780	hgsc.bcm.edu	hg19	19	18100536	18100536	+	Silent	SNP	C	C	A	rs377567043	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	KCNN1	NM_002248	exon8	c.C1182A	p.A394A	AAACGCCGCTGCT	.	247.0	10.0	289.0	0.0	.	74	.	.	.	alt	.	.	PASS	Atlas-SNP
GATAD2A	54815	hgsc.bcm.edu	hg19	19	19613195	19613195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GATAD2A	NM_017660	exon11	c.C1631T	p.T544M	TGCACACGTTCAG	.	93.0	36.0	182.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF573	126231	hgsc.bcm.edu	hg19	19	38230139	38230139	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZNF573	NM_001172690	exon5	c.G1252T	p.E418X	CGCATTCCTTGCA	.	300.0	132.0	275.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF573	126231	hgsc.bcm.edu	hg19	19	38230140	38230140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZNF573	NM_001172690	exon5	c.G1251T	p.K417N	GCATTCCTTGCAT	.	296.0	132.0	274.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
PRR12	57479	hgsc.bcm.edu	hg19	19	50097991	50097991	+	Silent	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PRR12	NM_020719	exon4	c.G399C	p.S133S	CATCTCGGGTGCC	.	30.0	15.0	72.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
NSFL1C	55968	hgsc.bcm.edu	hg19	20	1433207	1433207	+	Missense_Mutation	SNP	C	C	A	rs371393612	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	NSFL1C,caecum,carcinoma,0,1	NSFL1C	NM_016143	exon7	c.G716T	p.R239L	TCGTCCCGATGGT	.	345.0	19.0	285.0	2.0	.	38	.	.	.	alt	.	.	PASS	Atlas-SNP
PCED1A	64773	hgsc.bcm.edu	hg19	20	2819363	2819363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	FAM113A,colon,carcinoma,0,1	.	NM_022760	exon5	c.G473T	p.R158L	TTCTCCCGGTAGC	.	236.0	10.0	322.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
NF2	4771	hgsc.bcm.edu	hg19	22	30051666	30051666	+	Splice_Site	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	NF2_ENST00000403999,NS,carcinoma,0,5	NF2	NM_016418	exon6	c.599+1G>A	.	AGCCAGGTGAGGC	.	42.0	37.0	91.0	0.0	.	1312	.	.	.	none	.	.	PASS	Atlas-SNP
NXF3	56000	hgsc.bcm.edu	hg19	X	102337711	102337711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	NXF3	NM_022052	exon8	c.G757A	p.V253I	CATGGACGTCCAG	.	91.0	87.0	155.0	1.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
DOCK11	139818	hgsc.bcm.edu	hg19	X	117731503	117731503	+	Silent	SNP	A	A	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	DOCK11	NM_144658	exon21	c.A2373T	p.A791A	TGATGCAGAATCA	.	91.0	87.0	90.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1210	57481	hgsc.bcm.edu	hg19	X	118223094	118223094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	KIAA1210	NM_020721	exon11	c.T2099C	p.I700T	AACTGGATATGAG	.	58.0	50.0	57.0	0.0	.	171	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHG1	57480	hgsc.bcm.edu	hg19	6	151152656	151152656	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PLEKHG1	NM_001029884	exon16	c.2408delC	p.T803fs	.	.	127.0	60.0	158.0	0.0	.	97	.	0.472441	0	none	.	.	PASS	Atlas-INDEL
BHMT	635	hgsc.bcm.edu	hg19	5	78426827	78426828	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	BHMT	NM_001713	exon8	c.1109_1110insA	p.P370fs	.	.	276.0	105.0	276.0	0.0	.	53	.	0.380435	0	none	.	.	PASS	Atlas-INDEL
PSME4	23198	hgsc.bcm.edu	hg19	2	54147352	54147352	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PSME4	NM_014614	exon19	c.2399delA	p.D800fs	.	.	468.0	189.0	456.0	0.0	.	247	.	0.403846	0	none	.	.	PASS	Atlas-INDEL
KRT76	51350	hgsc.bcm.edu	hg19	12	53170736	53170736	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	KRT76	NM_015848	exon1	c.341delG	p.S114fs	.	.	54.0	24.0	72.0	0.0	.	72	.	0.444444	0	none	.	.	PASS	Atlas-INDEL
RGS7BP	401190	hgsc.bcm.edu	hg19	5	63905047	63905047	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	RGS7BP	NM_001029875	exon6	c.741delG	p.R247fs	.	.	101.0	38.0	121.0	0.0	.	32	.	0.376238	0	none	.	.	PASS	Atlas-INDEL
