Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TRIM63	84676	hgsc.bcm.edu	hg19	1	26392820	26392820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	TRIM63	NM_032588	exon2	c.G271A	p.G91S	GCAGGCCGTACAC	.	48.0	23.0	82.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
ATXN7L2	127002	hgsc.bcm.edu	hg19	1	110031587	110031587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ATXN7L2	NM_153340	exon7	c.G902A	p.G301E	GCCCAGGGCGCAA	.	74.0	42.0	77.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
PRRC2C	23215	hgsc.bcm.edu	hg19	1	171501480	171501480	+	Splice_Site	SNP	A	A	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	.	NM_015172	exon12	c.1249-2A>G	.	TGTTTCAGCATCC	.	75.0	36.0	110.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CFHR2	3080	hgsc.bcm.edu	hg19	1	196927093	196927093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	CFHR2	NM_005666	exon4	c.A503G	p.Y168C	CAGTATATGCTCC	.	183.0	85.0	264.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB18	10472	hgsc.bcm.edu	hg19	1	244218407	244218407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	.	NM_205768	exon2	c.A1331G	p.E444G	CGGGGGAGAAGCC	.	114.0	5.0	147.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
RMND5A	64795	hgsc.bcm.edu	hg19	2	86968117	86968117	+	Silent	SNP	T	T	C	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	RMND5A,NS,carcinoma,0,1	RMND5A	NM_022780	exon2	c.T210C	p.D70D	AAAGGATACTGTT	.	971.0	225.0	1255.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160295123	160295123	+	Silent	SNP	T	T	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	BAZ2B	NM_013450	exon8	c.A984T	p.P328P	AGGTAATGGCTGG	.	56.0	31.0	62.0	0.0	.	196	.	.	.	none	.	.	PASS	Atlas-SNP
TTC21B	79809	hgsc.bcm.edu	hg19	2	166785751	166785751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	TTC21B	NM_024753	exon11	c.T1280G	p.F427C	TGTGAAAAGTGAG	.	316.0	137.0	355.0	0.0	.	130	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179476842	179476842	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	TTN	NM_001267550	exon267	c.C50296T	p.R16766X	CATGTCGTTTTGT	.	99.0	44.0	109.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
PID1	55022	hgsc.bcm.edu	hg19	2	230127427	230127427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	PID1	NM_017933	exon2	c.T95C	p.L32S	AAATGTAAAGGTT	.	49.0	18.0	86.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
SLC26A6	65010	hgsc.bcm.edu	hg19	3	48664425	48664425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	SLC26A6	NM_022911	exon18	c.C1957A	p.P653T	CATCTGGGGCCTT	.	94.0	59.0	87.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
SEMA3F	6405	hgsc.bcm.edu	hg19	3	50214250	50214250	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	SEMA3F	NM_004186	exon7	c.A599T	p.K200M	AGGGCAAGTGTCC	.	57.0	15.0	63.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA2D3	55799	hgsc.bcm.edu	hg19	3	55018690	55018690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	CACNA2D3	NM_018398	exon30	c.A2612G	p.Y871C	AAGACTACACACA	.	93.0	70.0	83.0	0.0	.	159	.	.	.	none	.	.	PASS	Atlas-SNP
GTPBP8	29083	hgsc.bcm.edu	hg19	3	112709865	112709865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	GTPBP8	NM_138485	exon1	c.C19T	p.R7W	GGGCTGCGGCTGG	.	55.0	25.0	77.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
ALDH1L1	10840	hgsc.bcm.edu	hg19	3	125844500	125844500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ALDH1L1	NM_001270364	exon15	c.T1789C	p.C597R	CCAGGCAGGCAGC	.	144.0	102.0	154.0	1.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
SENP2	59343	hgsc.bcm.edu	hg19	3	185341841	185341841	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	SENP2	NM_021627	exon15	c.G1582T	p.E528X	CTTTTAGAGTGGA	.	55.0	18.0	53.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
JAKMIP1	152789	hgsc.bcm.edu	hg19	4	6107649	6107649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	JAKMIP1_ENST00000409021,colon,carcinoma,0,2	JAKMIP1	NM_001099433	exon3	c.G175A	p.E59K	CCTGCTCGCGCTC	.	33.0	14.0	92.0	0.0	.	250	.	.	.	none	.	.	PASS	Atlas-SNP
WDR19	57728	hgsc.bcm.edu	hg19	4	39191388	39191388	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	WDR19	NM_025132	exon4	c.G277C	p.D93H	CAGTTAGACAATG	.	93.0	50.0	114.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1211	57482	hgsc.bcm.edu	hg19	4	57182299	57182299	+	Silent	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	KIAA1211	NM_020722	exon8	c.C2631T	p.D877D	CGGAGACAGCGCG	.	62.0	31.0	79.0	0.0	.	178	.	.	.	none	.	.	PASS	Atlas-SNP
CNOT6L	246175	hgsc.bcm.edu	hg19	4	78665898	78665898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	CNOT6L	NM_144571	exon7	c.T691C	p.C231R	CGTCACAGTTAAC	.	48.0	20.0	93.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
C4orf29	80167	hgsc.bcm.edu	hg19	4	128930118	128930118	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	C4orf29	NM_001039717	exon5	c.C322G	p.P108A	TATAGACCTGTAT	.	164.0	77.0	238.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF366	167465	hgsc.bcm.edu	hg19	5	71739912	71739912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ZNF366	NM_152625	exon5	c.G1906A	p.A636T	GGGGGGCCAGGCC	.	63.0	28.0	75.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
HMGCR	3156	hgsc.bcm.edu	hg19	5	74643113	74643113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	HMGCR	NM_001130996	exon6	c.A535G	p.I179V	CTTGTGATTGGAG	.	91.0	37.0	131.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
YTHDC2	64848	hgsc.bcm.edu	hg19	5	112860848	112860848	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	YTHDC2	NM_022828	exon3	c.G449C	p.R150T	CAGAAAGAGGAAA	.	152.0	79.0	210.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
JAKMIP2	9832	hgsc.bcm.edu	hg19	5	146991868	146991868	+	Splice_Site	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	JAKMIP2	NM_001270934	exon20	c.2349+1G>A	.	CACCTACCTTTTC	.	34.0	15.0	32.0	0.0	.	154	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB12	221527	hgsc.bcm.edu	hg19	6	31868749	31868749	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ZBTB12	NM_181842	exon2	c.A334C	p.M112L	GCTCCATCTGCAG	.	63.0	37.0	100.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF318	24149	hgsc.bcm.edu	hg19	6	43305593	43305593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ZNF318	NM_014345	exon10	c.C6143T	p.S2048F	GATACAGAATTTT	.	87.0	40.0	175.0	0.0	.	175	.	.	.	none	.	.	PASS	Atlas-SNP
CAPN11	11131	hgsc.bcm.edu	hg19	6	44140108	44140108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	CAPN11	NM_007058	exon5	c.C479A	p.P160H	TGGTGCCCAGAGG	.	69.0	40.0	74.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
RNGTT	8732	hgsc.bcm.edu	hg19	6	89614664	89614664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	RNGTT	NM_003800	exon6	c.G454T	p.A152S	CAACTGCTGCTTC	.	76.0	37.0	113.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
TRAF3IP2	10758	hgsc.bcm.edu	hg19	6	111880633	111880633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	TRAF3IP2	NM_147686	exon9	c.C1673A	p.P558H	AGGGTGGGCAGAG	.	67.0	34.0	97.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	47.0	4.0	58.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871180	170871180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	TBP	NM_003194	exon3	c.C356A	p.P119Q	AGGCACCACAGCT	.	103.0	51.0	131.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
IQCE	23288	hgsc.bcm.edu	hg19	7	2625912	2625912	+	Silent	SNP	C	C	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.,1	IQCE	NM_152558	exon12	c.C895A	p.R299R	TTGTCCCGGAGTG	.	74.0	10.0	69.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
INMT	11185	hgsc.bcm.edu	hg19	7	30795228	30795228	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	INMT	NM_006774	exon3	c.T553G	p.S185A	CTTGCCTCACTGC	.	74.0	17.0	55.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
DYNC1I1	1780	hgsc.bcm.edu	hg19	7	95668656	95668656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	DYNC1I1	NM_004411	exon14	c.G1483T	p.A495S	CACATGGCAGTGG	.	140.0	89.0	127.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
ACTL6B	51412	hgsc.bcm.edu	hg19	7	100253150	100253150	+	Silent	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ACTL6B	NM_016188	exon3	c.G162A	p.L54L	CCCCTCCAGCTCC	.	65.0	22.0	51.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
MYOM2	9172	hgsc.bcm.edu	hg19	8	2026963	2026963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	MYOM2	NM_003970	exon12	c.G1411T	p.V471F	TCCAGGGTCTCTG	.	67.0	34.0	103.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
UBR5	51366	hgsc.bcm.edu	hg19	8	103273473	103273473	+	Silent	SNP	A	A	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	UBR5	NM_015902	exon56	c.T7857A	p.P2619P	ACCATTAGGAATG	.	91.0	36.0	103.0	0.0	.	285	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC14	9684	hgsc.bcm.edu	hg19	8	145745846	145745846	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	LRRC14	NM_001272036	exon4	c.T554G	p.L185R	AGGCACTCCGAAG	.	31.0	14.0	46.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
FREM1	158326	hgsc.bcm.edu	hg19	9	14776064	14776064	+	Missense_Mutation	SNP	G	G	A	rs369703203	alternate_allele	TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	FREM1	NM_144966	exon26	c.C4580T	p.P1527L	AGGTCAGGGGAAA	.	111.0	50.0	145.0	0.0	.	261	.	.	.	alt	.	.	PASS	Atlas-SNP
GPR144	347088	hgsc.bcm.edu	hg19	9	127215926	127215926	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	GPR144	NM_001161808	exon4	c.C950G	p.P317R	TGCTGCCCACTGT	.	21.0	10.0	22.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
MAMDC4	158056	hgsc.bcm.edu	hg19	9	139750216	139750216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	MAMDC4	NM_206920	exon13	c.G1504A	p.G502S	GCTGGGGGCTGGG	.	63.0	44.0	101.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	459976	459976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	DIP2C	NM_014974	exon8	c.G934A	p.V312M	TGACCACGCCCAG	.	33.0	14.0	63.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
GDF2	2658	hgsc.bcm.edu	hg19	10	48416620	48416620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	GDF2	NM_016204	exon1	c.T74C	p.L25P	CTCTGCAGTGGCT	.	59.0	31.0	78.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
HERC4	26091	hgsc.bcm.edu	hg19	10	69804160	69804160	+	Splice_Site	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	HERC4	NM_022079	exon5	c.386+1G>A	.	TTGTTACCTGGGT	.	76.0	41.0	114.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
UNC5B	219699	hgsc.bcm.edu	hg19	10	73051493	73051493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	UNC5B	NM_170744	exon10	c.G1599T	p.Q533H	CCAGCAGCTCTTG	.	47.0	20.0	61.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
BCCIP	56647	hgsc.bcm.edu	hg19	10	127512176	127512176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	BCCIP	NM_016567	exon1	c.C50T	p.P17L	CGCAGCCGCCGGA	.	73.0	39.0	128.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
MTMR2	8898	hgsc.bcm.edu	hg19	11	95657091	95657091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	MTMR2	NM_016156	exon1	c.C28T	p.L10F	AGCCAAGACTCTC	.	182.0	76.0	275.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
TMPRSS4	56649	hgsc.bcm.edu	hg19	11	117973872	117973872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	TMPRSS4	NM_019894	exon4	c.C214A	p.P72T	TTCATCCCGAGGA	.	43.0	21.0	81.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
DDX6	1656	hgsc.bcm.edu	hg19	11	118635954	118635954	+	Silent	SNP	G	G	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	DDX6	NM_004397	exon6	c.C609A	p.T203T	TAAATTGGTTCCT	.	54.0	19.0	61.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A12	6539	hgsc.bcm.edu	hg19	12	308000	308000	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	SLC6A12	NM_001122848	exon8	c.A809C	p.Y270S	TTCAAGTAGTAGA	.	221.0	125.0	225.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	hg19	12	40760813	40760813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	LRRK2	NM_198578	exon50	c.C7396A	p.L2466I	GGAAGCCTTAAAA	.	454.0	152.0	336.0	0.0	.	763	.	.	.	none	.	.	PASS	Atlas-SNP
LARP4	113251	hgsc.bcm.edu	hg19	12	50834282	50834282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	LARP4	NM_001170808	exon7	c.C700T	p.H234Y	TTTGCACACAATA	.	653.0	404.0	453.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
C12orf66	144577	hgsc.bcm.edu	hg19	12	64615868	64615868	+	Silent	SNP	G	G	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	C12orf66	NM_152440	exon1	c.C150T	p.S50S	CAGCCAGCTGCCC	.	202.0	134.0	216.0	1.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
TRHDE	29953	hgsc.bcm.edu	hg19	12	73012751	73012751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	TRHDE	NM_013381	exon13	c.C2267T	p.A756V	GGCATGCTGCCAG	.	409.0	135.0	381.0	0.0	.	194	.	.	.	none	.	.	PASS	Atlas-SNP
APPL2	55198	hgsc.bcm.edu	hg19	12	105582149	105582149	+	Silent	SNP	C	C	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	APPL2	NM_001251904	exon17	c.G1554T	p.V518V	ATAAATCACTTCA	.	115.0	68.0	105.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112620983	112620983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	.	NM_001109662	exon62	c.G10465A	p.D3489N	ATTCATCTTCACC	.	137.0	55.0	130.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TPCN1	53373	hgsc.bcm.edu	hg19	12	113704112	113704112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	TPCN1	NM_001143819	exon5	c.T581A	p.L194H	TGCTGCTCTCCCT	.	45.0	11.0	43.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
PIBF1	10464	hgsc.bcm.edu	hg19	13	73357620	73357620	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	PIBF1	NM_006346	exon2	c.A13T	p.I5F	CGAAAAATTTCAA	.	150.0	65.0	216.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
SALL2	6297	hgsc.bcm.edu	hg19	14	21991632	21991632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	SALL2	NM_005407	exon2	c.G2230A	p.G744R	CTGCCCCGGAGAC	.	38.0	15.0	61.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
PSMB11	122706	hgsc.bcm.edu	hg19	14	23511771	23511771	+	Missense_Mutation	SNP	C	C	T	rs376450654		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	PSMB11	NM_001099780	exon1	c.C337T	p.R113W	GAGCTGCGGCTTC	.	39.0	14.0	56.0	0.0	.	40	.	.	.	weak	.	.	PASS	Atlas-SNP
ZBTB42	100128927	hgsc.bcm.edu	hg19	14	105267928	105267928	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ZBTB42	NM_001137601	exon2	c.C394G	p.P132A	CCTGCCCCTGGGG	.	116.0	56.0	169.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
MAP1A	4130	hgsc.bcm.edu	hg19	15	43818609	43818609	+	Silent	SNP	G	G	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	MAP1A	NM_002373	exon4	c.G4938T	p.V1646V	GGATGTGGTCCAG	.	73.0	4.0	124.0	0.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	hg19	16	1259111	1259111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	CACNA1H	NM_021098	exon17	c.T3443C	p.L1148P	GCAGCCTGGGCCG	.	837.0	286.0	904.0	1.0	.	317	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC64B	146439	hgsc.bcm.edu	hg19	16	3080512	3080512	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	CCDC64B	NM_001103175	exon4	c.C700G	p.L234V	TCTGCAGTCTGCC	.	26.0	16.0	27.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM186	25880	hgsc.bcm.edu	hg19	16	8889985	8889985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	TMEM186	NM_015421	exon2	c.T466C	p.C156R	TGGGACAGTATGT	.	86.0	53.0	80.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
PALB2	79728	hgsc.bcm.edu	hg19	16	23646629	23646629	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	PALB2	NM_024675	exon4	c.C1238G	p.T413R	CTTCGTGTTGTTC	.	80.0	28.0	91.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
PDPR	55066	hgsc.bcm.edu	hg19	16	70190776	70190776	+	Silent	SNP	G	G	C	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	PDPR	NM_017990	exon19	c.G2634C	p.G878G	ACATGGGAAGTGA	.	93.0	36.0	66.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
ATMIN	23300	hgsc.bcm.edu	hg19	16	81077147	81077147	+	Silent	SNP	A	A	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ATMIN	NM_015251	exon4	c.A1044T	p.V348V	GTCAGTAGGAACC	.	120.0	42.0	82.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
TRPV3	162514	hgsc.bcm.edu	hg19	17	3446887	3446887	+	Missense_Mutation	SNP	T	T	C	rs372555157	alternate_allele	TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	TRPV3	NM_001258205	exon5	c.A347G	p.K116R	CGCCTCTTTTTCC	.	75.0	50.0	70.0	0.0	.	85	.	.	.	alt	.	.	PASS	Atlas-SNP
RAI1	10743	hgsc.bcm.edu	hg19	17	17697105	17697105	+	Silent	SNP	G	G	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	RAI1	NM_030665	exon3	c.G843A	p.Q281Q	GCAGCAGCAGCAG	.	87.0	4.0	73.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
DHX8	1659	hgsc.bcm.edu	hg19	17	41576230	41576230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	DHX8	NM_004941	exon10	c.A1301T	p.D434V	TTTTAGATGAGGA	.	58.0	12.0	65.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
ADAM11	4185	hgsc.bcm.edu	hg19	17	42855411	42855411	+	Missense_Mutation	SNP	C	C	T	rs149116155		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ADAM11	NM_002390	exon24	c.C2162T	p.T721M	CACCCACGGGGGA	.	62.0	13.0	79.0	0.0	.	118	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	hg19	18	43519695	43519695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	EPG5	NM_020964	exon10	c.A1970G	p.H657R	GCCCAATGGTCAC	.	133.0	51.0	128.0	0.0	.	199	.	.	.	none	.	.	PASS	Atlas-SNP
CDH19	28513	hgsc.bcm.edu	hg19	18	64235858	64235858	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	CDH19	NM_021153	exon3	c.A285C	p.R95S	ACCTGTTCTTTCA	.	104.0	69.0	66.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF236	7776	hgsc.bcm.edu	hg19	18	74617340	74617340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ZNF236	NM_007345	exon13	c.C2260A	p.L754I	ACTTCACTAAATT	.	113.0	35.0	109.0	0.0	.	325	.	.	.	none	.	.	PASS	Atlas-SNP
CLEC4G	339390	hgsc.bcm.edu	hg19	19	7794389	7794389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	CLEC4G	NM_198492	exon9	c.C745T	p.H249Y	TCCAGTGGCTACA	.	31.0	14.0	58.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11123641	11123641	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	SMARCA4	NM_003072	exon16	c.G2291C	p.W764S	TGGAGTGGCTGGT	.	83.0	34.0	142.0	0.0	.	502	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11141507	11141507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	SMARCA4_ENST00000358026,right_upper_lobe,carcinoma,0,2	SMARCA4	NM_003072	exon25	c.G3484C	p.G1162R	GGGCTCGGCCTGA	.	46.0	18.0	83.0	0.0	.	502	.	.	.	none	.	.	PASS	Atlas-SNP
LPPR2	0	hgsc.bcm.edu	hg19	19	11470232	11470232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	LPPR2	NM_022737	exon4	c.C91A	p.L31M	GTGATCCTGCTTG	.	67.0	37.0	78.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
UNC13A	23025	hgsc.bcm.edu	hg19	19	17759377	17759377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	UNC13A	NM_001080421	exon15	c.C1679T	p.T560M	GTGGCCGTCCACA	.	61.0	31.0	77.0	0.0	.	299	.	.	.	none	.	.	PASS	Atlas-SNP
RINL	126432	hgsc.bcm.edu	hg19	19	39360598	39360598	+	Silent	SNP	G	G	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	RINL	NM_001195833	exon9	c.C1327A	p.R443R	CGCCTCGAGCCAG	.	53.0	19.0	62.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
LILRB5	10990	hgsc.bcm.edu	hg19	19	54758645	54758645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	LILRB5	NM_001081442	exon6	c.C1208A	p.P403H	AGGTAGGGGTAGG	.	92.0	4.0	131.0	0.0	.	176	.	.	.	none	.	.	PASS	Atlas-SNP
TMX4	56255	hgsc.bcm.edu	hg19	20	8000101	8000101	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	TMX4	NM_021156	exon1	c.G160T	p.E54X	TCCACTCGCCCTC	.	135.0	48.0	141.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
TM9SF4	9777	hgsc.bcm.edu	hg19	20	30720849	30720849	+	Silent	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	TM9SF4	NM_014742	exon2	c.C49T	p.L17L	TTCTCCCTGATGT	.	91.0	30.0	62.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
ARFGEF2	10564	hgsc.bcm.edu	hg19	20	47585740	47585740	+	Silent	SNP	G	G	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ARFGEF2	NM_006420	exon9	c.G1116A	p.K372K	GCAGAAGGATGCC	.	183.0	8.0	150.0	0.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
ZC3H7B	23264	hgsc.bcm.edu	hg19	22	41721848	41721848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ZC3H7B	NM_017590	exon4	c.T211C	p.S71P	GCTGCCTCTGACC	.	137.0	90.0	134.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
GTSE1	51512	hgsc.bcm.edu	hg19	22	46704331	46704331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	GTSE1	NM_016426	exon4	c.G253A	p.E85K	ACATCTGAGAGTC	.	118.0	68.0	126.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
SHANK3	85358	hgsc.bcm.edu	hg19	22	51159620	51159620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	SHANK3	NM_033517	exon21	c.C3317T	p.A1106V	CTCTGGCCTCCCA	.	61.0	40.0	63.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
NRK	203447	hgsc.bcm.edu	hg19	X	105199587	105199587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	NRK	NM_198465	exon29	c.G4744A	p.V1582I	TATGATGTCTAAA	.	92.0	87.0	136.0	0.0	.	321	.	.	.	none	.	.	PASS	Atlas-SNP
RGAG1	57529	hgsc.bcm.edu	hg19	X	109694786	109694786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	RGAG1	NM_020769	exon3	c.C941T	p.S314F	TGTCATCTCCAGG	.	44.0	43.0	68.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
EXOC4	60412	hgsc.bcm.edu	hg19	7	133059613	133059615	+	In_Frame_Del	DEL	GAC	GAC	-	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	GAC	GAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	EXOC4	NM_021807	exon7	c.1038_1040del	p.346_347del	.	.	63.0	38.0	65.0	0.0	.	118	.	0.603175	0	none	.	.	PASS	Atlas-Indel,Pindel
DDX11	1663	hgsc.bcm.edu	hg19	12	31237572	31237572	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	DDX11	NM_030653	exon4	c.448delA	p.R150fs	.	.	340.0	85.0	355.0	0.0	.	188	.	0.25	0	none	.	.	PASS	Atlas-Indel,Pindel
IL21R	50615	hgsc.bcm.edu	hg19	16	27448951	27448954	+	Frame_Shift_Del	DEL	ACAG	ACAG	-	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	ACAG	ACAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	IL21R	NM_181079	exon5	c.360_363del	p.120_121del	.	.	98.0	51.0	108.0	0.0	.	95	.	0.520408	0	none	.	.	PASS	Atlas-Indel,Pindel
CDC37L1	55664	hgsc.bcm.edu	hg19	9	4701924	4701925	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	CDC37L1	NM_017913	exon6	c.808_809insT	p.V270fs	.	.	51.0	24.0	68.0	0.0	.	19	.	0.470588	0	none	.	.	PASS	Atlas-Indel,Pindel
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89371696	89371696	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ANKRD11	NM_001256182	exon5	c.145delA	p.K49fs	.	.	80.0	24.0	77.0	0.0	.	195	.	0.3	0	none	.	.	PASS	Atlas-Indel,Pindel
MUC16	94025	hgsc.bcm.edu	hg19	19	8969402	8969403	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	MUC16	NM_024690	exon79	c.42942_42943insC	p.P14314fs	.	.	48.0	22.0	73.0	0.0	.	4315	.	0.458333	0	none	.	.	PASS	Atlas-Indel,Pindel
UQCRC2	7385	hgsc.bcm.edu	hg19	16	21991981	21991981	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	UQCRC2	NM_003366	exon13	c.1237delC	p.L413fs	.	.	79.0	20.0	73.0	0.0	.	46	.	0.253165	0	none	.	.	PASS	Atlas-Indel,Pindel
MSH2	4436	hgsc.bcm.edu	hg19	2	47693891	47693892	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	MSH2	NM_000251	exon10	c.1605_1606insA	p.N535fs	.	.	314.0	152.0	464.0	0.0	.	198	.	0.484076	0	none	.	.	PASS	Atlas-Indel,Pindel
DBF4	10926	hgsc.bcm.edu	hg19	7	87516694	87516695	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	DBF4	NM_006716	exon5	c.500_501del	p.167_167del	.	.	223.0	131.0	200.0	0.0	.	67	.	0.587444	0	none	.	.	PASS	Atlas-Indel,Pindel
HSD17B8	7923	hgsc.bcm.edu	hg19	6	33173952	33173953	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	HSD17B8	NM_014234	exon7	c.692_693del	p.231_231del	.	.	82.0	42.0	149.0	0.0	.	20	.	0.512195	0	none	.	.	PASS	Atlas-Indel,Pindel
PCK1	5105	hgsc.bcm.edu	hg19	20	56138649	56138651	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	PCK1	NM_002591	exon6	c.826_828del	p.276_276del	.	.	136.0	40.0	106.0	0.0	.	95	.	0.294118	0	none	.	.	PASS	Atlas-Indel,Pindel
POLN	353497	hgsc.bcm.edu	hg19	4	2210096	2210125	+	In_Frame_Del	DEL	GAGCTGATGCTCTTCTGTTTTTGGTCAGCA	GAGCTGATGCTCTTCTGTTTTTGGTCAGCA	-	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	GAGCTGATGCTCTTCTGTTTTTGGTCAGCA	GAGCTGATGCTCTTCTGTTTTTGGTCAGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	POLN	NM_181808	exon3	c.304_333del	p.102_111del	.	.	38.0	13.0	71.0	0.0	.	82	.	0.342105	0	none	.	.	PASS	Atlas-Indel,Pindel
ACP2	53	hgsc.bcm.edu	hg19	11	47264636	47264637	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ACP2	NM_001610	exon9	c.895_896insT	p.V299fs	.	.	58.0	26.0	89.0	0.0	.	36	.	0.448276	0	none	.	.	PASS	Atlas-Indel,Pindel
NIPAL4	348938	hgsc.bcm.edu	hg19	5	156899945	156899945	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	NIPAL4	NM_001099287	exon6	c.1377delC	p.P459fs	.	.	27.0	13.0	31.0	0.0	.	48	.	0.481481	0	none	.	.	PASS	Atlas-Indel,Pindel
ATAD2B	54454	hgsc.bcm.edu	hg19	2	24086371	24086371	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	ATAD2B	NM_017552	exon12	c.1360delT	p.L454X	.	.	191.0	91.0	208.0	0.0	.	110	.	0.47644	0	none	.	.	PASS	Atlas-Indel,Pindel
KCNH3	23416	hgsc.bcm.edu	hg19	12	49942954	49942955	+	Frame_Shift_Ins	INS	-	-	CGGTGAGCCC	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	KCNH3	NM_012284	exon8	c.1466_1467insCGGTGAGCCC	p.G489fs	.	.	61.0	10.0	68.0	0.0	.	88	.	0.163934	0	none	.	.	PASS	Atlas-Indel,Pindel
PLCD1	5333	hgsc.bcm.edu	hg19	3	38070995	38071000	+	Frame_Shift_Del	DEL	TCACCG	TCACCG	-	novel		TCGA-G7-A8LB-01A-11D-A35Z-10	TCGA-G7-A8LB-10A-01D-A35Z-10	TCACCG	TCACCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f1beace3-f40d-4e2f-abff-815f257096c7	3c8d7f6b-ef32-4955-8113-91d246df62d4	.	PLCD1	NM_006225	exon1	c.34_34del	p.12_12del	.	.	118.0	25.0	125.0	0.0	.	87	.	0.211864	0	none	.	.	PASS	Atlas-Indel,Pindel
