Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
LMNA	4000	hgsc.bcm.edu	hg19	1	156084843	156084843	+	Missense_Mutation	SNP	A	A	G	rs58436778		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	LMNA	NM_170707	exon1	c.A134G	p.Y45C	CGGTCTACATCGA	.	316.0	93.0	231.0	0.0	.	31	.	.	.	weak	.	.	PASS	Atlas-SNP
XPR1	9213	hgsc.bcm.edu	hg19	1	180843054	180843054	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	XPR1	NM_004736	exon13	c.T1784G	p.V595G	CTACTGTCTTTGC	.	117.0	42.0	82.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228560567	228560567	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	OBSCN	NM_001271223	exon105	c.C24959G	p.A8320G	CCCACGCAGGCCT	.	175.0	58.0	120.0	0.0	.	2142	.	.	.	none	.	.	PASS	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61522309	61522309	+	Silent	SNP	C	C	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	USP34	NM_014709	exon31	c.G4371A	p.E1457E	CGTAGACTCCCTC	.	175.0	9.0	192.0	0.0	.	334	.	.	.	none	.	.	PASS	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125405341	125405341	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	CNTNAP5	NM_130773	exon13	c.A1880T	p.K627M	AGGACAAGATCTG	.	202.0	87.0	220.0	0.0	.	405	.	.	.	none	.	.	PASS	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	hg19	2	133540804	133540804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	NCKAP5	NM_207363	exon14	c.A3580G	p.K1194E	GATTCTTGGAGTC	.	114.0	22.0	93.0	0.0	.	322	.	.	.	none	.	.	PASS	Atlas-SNP
R3HDM1	23518	hgsc.bcm.edu	hg19	2	136399272	136399272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	R3HDM1	NM_015361	exon15	c.A1386T	p.Q462H	TGGGCAAGTCGCA	.	87.0	19.0	73.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
KIF5C	3800	hgsc.bcm.edu	hg19	2	149853801	149853801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	KIF5C	NM_004522	exon18	c.C2047A	p.Q683K	AGCTTCCAGGATA	.	337.0	152.0	293.0	0.0	.	166	.	.	.	none	.	.	PASS	Atlas-SNP
NCL	4691	hgsc.bcm.edu	hg19	2	232325488	232325488	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	NCL	NM_005381	exon4	c.G703C	p.D235H	CTTCATCCTCAGC	.	72.0	9.0	75.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
PER2	8864	hgsc.bcm.edu	hg19	2	239164455	239164455	+	Silent	SNP	C	C	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	PER2	NM_022817	exon18	c.G2163A	p.K721K	CAGCTTCTTGAAG	.	117.0	48.0	151.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
HACL1	26061	hgsc.bcm.edu	hg19	3	15616583	15616583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	HACL1	NM_012260	exon10	c.G810T	p.L270F	AAATTGCAAAGCC	.	472.0	196.0	457.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
COPB2	9276	hgsc.bcm.edu	hg19	3	139092573	139092573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	COPB2,NS,carcinoma,0,1	COPB2	NM_004766	exon8	c.G829A	p.V277M	TGGCCACGCACCA	.	138.0	43.0	98.0	1.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
FSTL4	23105	hgsc.bcm.edu	hg19	5	132556553	132556553	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	FSTL4	NM_015082	exon12	c.A1345C	p.S449R	CCACGCTGAGGCC	.	109.0	43.0	120.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHA9	9752	hgsc.bcm.edu	hg19	5	140229249	140229249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	PCDHA9	NM_031857	exon1	c.C1169T	p.T390M	CCCTGACGCCCCA	.	194.0	84.0	177.0	0.0	.	373	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF184	7738	hgsc.bcm.edu	hg19	6	27419747	27419747	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	ZNF184	NM_007149	exon6	c.G1591C	p.E531Q	TACATTCATAAGC	.	54.0	12.0	46.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
TAF8	129685	hgsc.bcm.edu	hg19	6	42025251	42025251	+	Silent	SNP	G	G	A	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	TAF8	NM_138572	exon5	c.G489A	p.P163P	AACTCCGGTGAGT	.	78.0	67.0	112.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
SERAC1	84947	hgsc.bcm.edu	hg19	6	158565380	158565380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	SERAC1	NM_032861	exon7	c.G560A	p.S187N	AGATCACTCTCTT	.	229.0	101.0	249.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
DPY19L1	23333	hgsc.bcm.edu	hg19	7	34979806	34979806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	DPY19L1	NM_015283	exon19	c.A1604G	p.Q535R	TCTTCTTGGGGCA	.	47.0	15.0	52.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF713	349075	hgsc.bcm.edu	hg19	7	56007671	56007671	+	Missense_Mutation	SNP	G	G	A	rs371670199		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	ZNF713	NM_182633	exon4	c.G1265A	p.R422H	CTGTTCGCCACAG	.	90.0	23.0	77.0	0.0	.	47	.	.	.	weak	.	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100679220	100679220	+	Missense_Mutation	SNP	C	C	T	rs374713003		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	MUC17	NM_001040105	exon3	c.C4523T	p.T1508M	TCTCAACGCCTAG	.	80.0	44.0	93.0	0.0	.	804	.	.	.	weak	.	.	PASS	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	hg19	7	142562074	142562074	+	Silent	SNP	C	C	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	EPHB6	NM_004445	exon7	c.C516T	p.S172S	CTCCTCCTCTTCT	.	89.0	5.0	87.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
DPP6	1804	hgsc.bcm.edu	hg19	7	154598747	154598747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	DPP6	NM_130797	exon16	c.G1591T	p.D531Y	TCCTGTGACCTGG	.	60.0	11.0	50.0	0.0	.	383	.	.	.	none	.	.	PASS	Atlas-SNP
RIMS2	9699	hgsc.bcm.edu	hg19	8	104924348	104924348	+	Missense_Mutation	SNP	G	G	A	rs375138135		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	RIMS2_ENST00000507740,NS,carcinoma,0,13	RIMS2	NM_001100117	exon6	c.G1760A	p.R587H	ATAAGCGTCTAAA	.	138.0	35.0	130.0	0.0	.	1357	.	.	.	weak	.	.	PASS	Atlas-SNP
WDR67	93594	hgsc.bcm.edu	hg19	8	124109586	124109586	+	Silent	SNP	A	A	C	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	WDR67	NM_001145088	exon6	c.A736C	p.R246R	GAAGCTAGGCAGC	.	121.0	38.0	97.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
MAMDC2	256691	hgsc.bcm.edu	hg19	9	72728040	72728040	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	MAMDC2	NM_153267	exon5	c.G635C	p.S212T	TCAAGAGTGAACT	.	87.0	33.0	106.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
NOL8	55035	hgsc.bcm.edu	hg19	9	95077665	95077665	+	Silent	SNP	A	A	G	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	NOL8	NM_017948	exon7	c.T1242C	p.N414N	TTCTCTATTTTTG	.	68.0	39.0	83.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1462	57608	hgsc.bcm.edu	hg19	10	30317816	30317816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	KIAA1462	NM_020848	exon3	c.G1261A	p.V421I	ACTGAACGAAGCC	.	104.0	9.0	107.0	0.0	.	162	.	.	.	none	.	.	PASS	Atlas-SNP
PARD3	56288	hgsc.bcm.edu	hg19	10	34673133	34673133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	PARD3	NM_001184788	exon8	c.C940T	p.H314Y	TTTCATGTTCAGC	.	85.0	12.0	78.0	0.0	.	131	.	.	.	none	.	.	PASS	Atlas-SNP
PDZD7	79955	hgsc.bcm.edu	hg19	10	102770293	102770293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	PDZD7	NM_001195263	exon15	c.A2353C	p.S785R	CCCGGCTGCTGCG	.	400.0	18.0	452.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
FGF4	2249	hgsc.bcm.edu	hg19	11	69588117	69588117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	FGF4,NS,lymphoid_neoplasm,0,1	FGF4	NM_002007	exon3	c.C581T	p.S194L	GTGGGCGACACTC	.	174.0	82.0	221.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	hg19	11	95825257	95825257	+	Silent	SNP	T	T	C	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	MAML2,colon,carcinoma,0,1	MAML2	NM_032427	exon2	c.A1938G	p.Q646Q	CTGCTGTTGTTGC	.	53.0	3.0	70.0	1.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
AVPR1A	552	hgsc.bcm.edu	hg19	12	63544413	63544413	+	Silent	SNP	G	G	C	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	AVPR1A	NM_000706	exon1	c.C204G	p.G68G	GCTGTTGCCCAGC	.	115.0	21.0	76.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
SPERT	220082	hgsc.bcm.edu	hg19	13	46287523	46287523	+	Silent	SNP	G	G	A	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	SPERT	NM_152719	exon3	c.G363A	p.V121V	GCGGGTGCAGCTC	.	76.0	62.0	144.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	hg19	17	21318791	21318791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	.	NM_001194958	exon3	c.T137A	p.F46Y	ACCGCTTCGTCAA	.	125.0	14.0	108.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MYO9B	4650	hgsc.bcm.edu	hg19	19	17305947	17305947	+	Silent	SNP	G	G	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	MYO9B	NM_001130065	exon22	c.G3711T	p.T1237T	GAAGACGCTGCCC	.	116.0	5.0	162.0	0.0	.	264	.	.	.	none	.	.	PASS	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	hg19	19	36004269	36004269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	DMKN	NM_001190347	exon1	c.G109A	p.E37K	GGGCCTCCCCAAT	.	44.0	9.0	39.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
PRMT1	3276	hgsc.bcm.edu	hg19	19	50185321	50185321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	PRMT1	NM_001536	exon4	c.G347A	p.G116E	TCATCGGGGTGAG	.	85.0	40.0	89.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF816	125893	hgsc.bcm.edu	hg19	19	53453491	53453491	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	ZNF816	NM_001202457	exon4	c.G1537C	p.E513Q	CACATTCTTCACA	.	68.0	7.0	74.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
RFPL4A	342931	hgsc.bcm.edu	hg19	19	56274128	56274128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	RFPL4A	NM_001145014	exon3	c.C451A	p.H151N	GGCCGCCATTACT	.	392.0	85.0	391.0	0.0	.	8	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP4	147945	hgsc.bcm.edu	hg19	19	56388499	56388499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	NLRP4	NM_134444	exon8	c.T2663C	p.L888P	GGGCTCTGACGCA	.	116.0	37.0	159.0	0.0	.	331	.	.	.	none	.	.	PASS	Atlas-SNP
LRRN4	164312	hgsc.bcm.edu	hg19	20	6031523	6031523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	LRRN4	NM_152611	exon3	c.C762A	p.N254K	CTGCAGGTTGGGG	.	165.0	101.0	191.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
CD93	22918	hgsc.bcm.edu	hg19	20	23065706	23065706	+	Missense_Mutation	SNP	G	G	A	rs139005135		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	CD93	NM_012072	exon1	c.C1124T	p.P375L	CCGCCCGGCTCAT	.	154.0	67.0	170.0	0.0	.	84	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
SIM2	6493	hgsc.bcm.edu	hg19	21	38115795	38115795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	SIM2	NM_005069	exon9	c.T1106C	p.L369S	GGAAATTAGTGAA	.	230.0	96.0	234.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	hg19	21	47831608	47831608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	PCNT	NM_006031	exon28	c.A5621G	p.N1874S	AGAGAAATTTAGA	.	125.0	56.0	130.0	0.0	.	283	.	.	.	none	.	.	PASS	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765164	66765164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	AR	NM_000044	exon1	c.A176T	p.Q59L	TGCAGCAGCAGCA	.	119.0	16.0	72.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765222	66765222	+	Silent	SNP	G	G	A	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	AR	NM_000044	exon1	c.G234A	p.Q78Q	GCAGCAGCAGCAA	.	150.0	12.0	92.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765223	66765223	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	AR	NM_000044	exon1	c.C235G	p.Q79E	CAGCAGCAGCAAG	.	152.0	12.0	94.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA1	6594	hgsc.bcm.edu	hg19	X	128652406	128652406	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	SMARCA1	NM_139035	exon2	c.C193T	p.Q65X	TGAGTTGAAATGA	.	213.0	193.0	253.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	10809	10809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	.	ENST00000361381	exon1	c.T50C	p.L17P	CATGACTTTCCAA	.	37.0	5.0	20.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114257900	114257915	+	Frame_Shift_Del	DEL	AGATGCACCAACCTTA	AGATGCACCAACCTTA	-	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	AGATGCACCAACCTTA	AGATGCACCAACCTTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	ANK2	NM_001148	exon31	c.3758_3773del	p.1253_1258del	.	.	66.0	41.0	158.0	0.0	.	576	.	0.621212	0	none	.	.	PASS	Atlas-Indel,Pindel
BAP1	8314	hgsc.bcm.edu	hg19	3	52437709	52437709	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	BAP1	NM_004656	exon13	c.1453delT	p.S485fs	.	.	44.0	36.0	74.0	0.0	.	371	.	0.818182	0	none	.	.	PASS	Atlas-Indel,Pindel
CCDC104	112942	hgsc.bcm.edu	hg19	2	55772097	55772138	+	In_Frame_Del	DEL	AGGAGATTGCTTGCAGAGAAACTCAAAGAAGAAGTTATTAAT	AGGAGATTGCTTGCAGAGAAACTCAAAGAAGAAGTTATTAAT	-	novel		TCGA-G7-A8LD-01A-11D-A35Z-10	TCGA-G7-A8LD-10A-01D-A35Z-10	AGGAGATTGCTTGCAGAGAAACTCAAAGAAGAAGTTATTAAT	AGGAGATTGCTTGCAGAGAAACTCAAAGAAGAAGTTATTAAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	755a9884-f632-4260-bf9d-a84b5d86aa87	632fa524-d179-4f7e-9cbc-b57a32d1fb38	.	CCDC104	NM_080667	exon10	c.981_1022del	p.327_341del	.	.	541.0	78.0	750.0	0.0	.	35	.	0.144177	0	none	.	.	PASS	Atlas-Indel,Pindel
