Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MTHFR	4524	hgsc.bcm.edu	hg19	1	11854058	11854058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	MTHFR	NM_005957	exon9	c.T1436C	p.I479T	GTGAGGATGCCCT	.	57.0	50.0	38.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
GJB3	2707	hgsc.bcm.edu	hg19	1	35251060	35251060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	GJB3,NS,carcinoma,0,1	GJB3	NM_001005752	exon2	c.G697A	p.A233T	TCCTCCGCCAGCC	.	189.0	39.0	163.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
DNM3	26052	hgsc.bcm.edu	hg19	1	172017810	172017810	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	DNM3	NM_001136127	exon10	c.A1255C	p.K419Q	ATTGTAAAGTTGA	.	318.0	246.0	218.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
PNPT1	87178	hgsc.bcm.edu	hg19	2	55863466	55863466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	PNPT1	NM_033109	exon28	c.A2258G	p.Q753R	GGCGACTGAAGCA	.	71.0	28.0	34.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
LONRF2	164832	hgsc.bcm.edu	hg19	2	100916274	100916274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	LONRF2	NM_198461	exon5	c.T1172C	p.L391P	GTTGGAAGGATGC	.	126.0	41.0	62.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ZC3H6	376940	hgsc.bcm.edu	hg19	2	113074893	113074893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	ZC3H6	NM_198581	exon7	c.C960G	p.N320K	AGAGAACTGCATT	.	522.0	184.0	317.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
PAX8	7849	hgsc.bcm.edu	hg19	2	113999196	113999196	+	Missense_Mutation	SNP	C	C	T	rs199890664	alternate_allele	TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	PAX8	NM_013952	exon7	c.G709A	p.E237K	GGCACTCGAGCGG	.	53.0	15.0	52.0	0.0	.	42	.	.	.	alt	C|0.999;G|0.001	.	PASS	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	169997040	169997040	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	LRP2	NM_004525	exon72	c.T13124G	p.I4375S	AGGTTGATAGGCA	.	51.0	17.0	35.0	0.0	.	751	.	.	.	none	.	.	PASS	Atlas-SNP
HAT1	8520	hgsc.bcm.edu	hg19	2	172848147	172848147	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	HAT1	NM_003642	exon11	c.G1141T	p.E381X	CCAGAAGAACTGA	.	383.0	153.0	277.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
NEUROD1	4760	hgsc.bcm.edu	hg19	2	182543486	182543486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	NEUROD1,NS,carcinoma,0,1	NEUROD1	NM_002500	exon2	c.C102G	p.H34Q	TGCCTCGTGCTCC	.	76.0	30.0	59.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52443594	52443594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	BAP1	NM_004656	exon3	c.A98G	p.Y33C	AGGTCGTAGATCT	.	111.0	5.0	106.0	0.0	.	371	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM45A	55076	hgsc.bcm.edu	hg19	3	100295846	100295846	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	TMEM45A	NM_018004	exon6	c.C812A	p.S271X	AAGAATCAGAAGA	.	83.0	28.0	43.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
EPHB3	2049	hgsc.bcm.edu	hg19	3	184299386	184299386	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	EPHB3	NM_004443	exon16	c.C2973G	p.N991K	GATGAACCAGACG	.	129.0	53.0	106.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
LMLN	89782	hgsc.bcm.edu	hg19	3	197726166	197726166	+	Silent	SNP	G	G	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	LMLN	NM_001136049	exon11	c.G1185A	p.Q395Q	CACTCAGAATCGA	.	58.0	25.0	41.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
POU4F2	5458	hgsc.bcm.edu	hg19	4	147560466	147560466	+	Silent	SNP	C	C	T	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	POU4F2	NM_004575	exon1	c.C174T	p.G58G	CGGCGGCGGCGGC	.	109.0	7.0	49.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
POU4F2	5458	hgsc.bcm.edu	hg19	4	147560484	147560484	+	Silent	SNP	C	C	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	POU4F2	NM_004575	exon1	c.C192A	p.G64G	CGGCGGCGGCGGC	.	116.0	6.0	63.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
NEK1	4750	hgsc.bcm.edu	hg19	4	170354709	170354709	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	NEK1	NM_001199397	exon29	c.A2872C	p.T958P	CCTTTGTTTCTTT	.	215.0	74.0	121.0	0.0	.	203	.	.	.	none	.	.	PASS	Atlas-SNP
AGXT2	64902	hgsc.bcm.edu	hg19	5	35014199	35014199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	AGXT2	NM_031900	exon10	c.G989A	p.G330D	TGAGAGCCCAACC	.	183.0	73.0	163.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGA2	56113	hgsc.bcm.edu	hg19	5	140718667	140718667	+	Silent	SNP	C	C	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	PCDHGA2	NM_018915	exon1	c.C129G	p.S43S	AGGCTCCTTCGTA	.	77.0	34.0	72.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
NR3C1	2908	hgsc.bcm.edu	hg19	5	142662143	142662143	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	NR3C1_ENST00000415690,NS,carcinoma,0,2	NR3C1	NM_001024094	exon8	c.C2174G	p.S725C	TGCATAGAATCCA	.	93.0	37.0	77.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
CPEB4	80315	hgsc.bcm.edu	hg19	5	173372036	173372036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	CPEB4	NM_030627	exon5	c.A1349G	p.H450R	CTCTTCATAGTGG	.	179.0	71.0	150.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
OR2B2	81697	hgsc.bcm.edu	hg19	6	27879766	27879766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	OR2B2	NM_033057	exon1	c.A332G	p.E111G	AGACATTCTGTGG	.	134.0	54.0	107.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56489406	56489406	+	Silent	SNP	T	T	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	DST	NM_001723	exon22	c.A3240C	p.R1080R	AGTATATCGAGTC	.	44.0	16.0	30.0	0.0	.	1427	.	.	.	none	.	.	PASS	Atlas-SNP
FILIP1	27145	hgsc.bcm.edu	hg19	6	76024129	76024129	+	Silent	SNP	G	G	T	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	FILIP1	NM_015687	exon5	c.C1419A	p.V473V	ACTCTTGACCACC	.	73.0	4.0	43.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
FAM26F	441168	hgsc.bcm.edu	hg19	6	116784681	116784681	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	FAM26F	NM_001010919	exon3	c.T761A	p.I254N	CAAGCATGAAAGA	.	202.0	78.0	150.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
SLC2A12	154091	hgsc.bcm.edu	hg19	6	134349788	134349788	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	SLC2A12	NM_145176	exon2	c.A1175T	p.Y392F	GGTCCATAAATCA	.	137.0	49.0	89.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100683876	100683876	+	Missense_Mutation	SNP	T	T	G	rs145514577		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	MUC17,NS,carcinoma,0,1	MUC17	NM_001040105	exon3	c.T9179G	p.I3060S	TGGCCATTCCTGA	.	53.0	6.0	37.0	1.0	.	804	.	.	.	weak	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116423413	116423413	+	Missense_Mutation	SNP	T	T	C	rs121913247		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	MET,rectum,carcinoma,-2,1	MET	NM_001127500	exon19	c.T3742C	p.Y1248H	GACATGTATGATA	.	242.0	129.0	110.0	1.0	.	412	.	.	.	weak	.	.	PASS	Atlas-SNP
SSMEM1	0	hgsc.bcm.edu	hg19	7	129847790	129847790	+	Missense_Mutation	SNP	C	C	T	rs371191805		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	.	NM_145268	exon1	c.C40T	p.P14S	GATCCTCCCCCAA	.	228.0	127.0	103.0	0.0	.	.	.	.	.	weak	.	.	PASS	Atlas-SNP
C7orf34	135927	hgsc.bcm.edu	hg19	7	142636835	142636835	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	C7orf34	NM_178829	exon1	c.G192C	p.E64D	GACAGAGAAAACG	.	170.0	84.0	94.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
TSPYL5	85453	hgsc.bcm.edu	hg19	8	98289181	98289181	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	TSPYL5	NM_033512	exon1	c.T892G	p.F298V	GATCGAAGTAGAA	.	153.0	51.0	90.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	134024148	134024148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	TG	NM_003235	exon36	c.T6265C	p.S2089P	CTAGTGTCTCTGG	.	66.0	32.0	46.0	0.0	.	416	.	.	.	none	.	.	PASS	Atlas-SNP
CIZ1	25792	hgsc.bcm.edu	hg19	9	130939947	130939947	+	Silent	SNP	G	G	T	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	CIZ1	NM_001257975	exon10	c.C1806A	p.P602P	GTCACTGGGGCGG	.	57.0	26.0	52.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
PRKCQ	5588	hgsc.bcm.edu	hg19	10	6557092	6557092	+	Silent	SNP	C	C	T	rs201768145		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	PRKCQ	NM_006257	exon2	c.G6A	p.S2S	AAATGGCGACATG	.	80.0	22.0	52.0	0.0	.	113	.	.	.	weak	C|0.999;T|0.001	0.001	PASS	Atlas-SNP
MICU1	10367	hgsc.bcm.edu	hg19	10	74127978	74127978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	.	NM_001195518	exon12	c.G1406C	p.W469S	AAGTCCCAGGCAG	.	86.0	39.0	56.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TSPAN14	81619	hgsc.bcm.edu	hg19	10	82264502	82264502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	TSPAN14	NM_030927	exon3	c.C100A	p.L34I	GTCTTCCTTGGAG	.	128.0	51.0	108.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
TCERG1L	256536	hgsc.bcm.edu	hg19	10	132896657	132896657	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	TCERG1L	NM_174937	exon11	c.A1516C	p.K506Q	CTTCTTTTATTCT	.	23.0	7.0	26.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
PIDD	55367	hgsc.bcm.edu	hg19	11	801091	801091	+	Silent	SNP	G	G	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	PIDD	NM_145887	exon10	c.C1660T	p.L554L	ACAACAGGTGCAG	.	127.0	51.0	99.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
CDKN1C	1028	hgsc.bcm.edu	hg19	11	2906711	2906711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	CDKN1C	NM_000076	exon1	c.C9A	p.D3E	GGACGCGTCGGAC	.	158.0	62.0	145.0	0.0	.	4	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP14	338323	hgsc.bcm.edu	hg19	11	7063888	7063888	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	NLRP14	NM_176822	exon4	c.A631C	p.K211Q	AGGTTTAAGTATG	.	244.0	87.0	157.0	0.0	.	187	.	.	.	none	.	.	PASS	Atlas-SNP
SYT13	57586	hgsc.bcm.edu	hg19	11	45277403	45277403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	SYT13	NM_020826	exon2	c.G223A	p.A75T	GGAGGGCACGGGG	.	143.0	45.0	99.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
GDF3	9573	hgsc.bcm.edu	hg19	12	7842823	7842823	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	GDF3	NM_020634	exon2	c.G746C	p.R249T	GCTCTCCTTTTCC	.	151.0	61.0	122.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
OVCH1	341350	hgsc.bcm.edu	hg19	12	29608320	29608320	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	OVCH1	NM_183378	exon20	c.C2299G	p.L767V	ATACTAGTGGCCC	.	339.0	123.0	247.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
OVCH1	341350	hgsc.bcm.edu	hg19	12	29608321	29608321	+	Silent	SNP	T	T	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	OVCH1	NM_183378	exon20	c.A2298G	p.P766P	TACTAGTGGCCCA	.	335.0	121.0	243.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
IPO8	10526	hgsc.bcm.edu	hg19	12	30792659	30792659	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	IPO8	NM_006390	exon21	c.T2279G	p.L760R	ACGAAGAGTGGAA	.	87.0	41.0	55.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
SLC2A13	114134	hgsc.bcm.edu	hg19	12	40158612	40158612	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	SLC2A13	NM_052885	exon8	c.C1494G	p.Y498X	GAAATTGTAAGCC	.	136.0	40.0	91.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49434397	49434397	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	MLL2_ENST00000301067,NS,carcinoma,0,2	MLL2	NM_003482	exon31	c.C7156G	p.R2386G	GGGGCCGAGGAGT	.	199.0	73.0	147.0	0.0	.	1173	.	.	.	none	.	.	PASS	Atlas-SNP
LRIG3	121227	hgsc.bcm.edu	hg19	12	59271539	59271539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	LRIG3	NM_153377	exon15	c.A2179G	p.K727E	TCAGTTTAGGGGG	.	90.0	42.0	56.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	hg19	12	78400770	78400770	+	Silent	SNP	C	C	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	NAV3	NM_014903	exon8	c.C1452A	p.V484V	ACCAGTCAAAGAA	.	292.0	109.0	170.0	0.0	.	506	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	80982096	80982096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	PTPRQ	NM_001145026	exon23	c.T3958C	p.Y1320H	TACCTCTATGAAG	.	160.0	61.0	121.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
SALL2	6297	hgsc.bcm.edu	hg19	14	21993091	21993091	+	Silent	SNP	G	G	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	SALL2	NM_005407	exon2	c.C771T	p.S257S	GGAGGAGGAAGAT	.	99.0	4.0	67.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
RHBDL1	9028	hgsc.bcm.edu	hg19	16	726998	726998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	RHBDL1	NM_003961	exon3	c.C649T	p.R217C	GGGGCCCGCCTCA	.	99.0	46.0	84.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
GSG2	83903	hgsc.bcm.edu	hg19	17	3629517	3629517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	GSG2	NM_031965	exon1	c.A2288G	p.N763S	AATGTAACACTCC	.	172.0	100.0	99.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
DHX33	56919	hgsc.bcm.edu	hg19	17	5354241	5354241	+	Silent	SNP	C	C	T	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	DHX33	NM_020162	exon9	c.G1410A	p.A470A	AATGGCCGCCTGA	.	195.0	43.0	117.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
ALOX12	239	hgsc.bcm.edu	hg19	17	6909258	6909258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	ALOX12	NM_000697	exon10	c.C1330A	p.P444T	TGTCCTCCTGACG	.	66.0	16.0	30.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
CISD3	284106	hgsc.bcm.edu	hg19	17	36889563	36889563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	CISD3	NM_001136498	exon4	c.C239T	p.T80I	AACGCACTGGCCT	.	108.0	55.0	62.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
MPP2	4355	hgsc.bcm.edu	hg19	17	41960406	41960406	+	Silent	SNP	C	C	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	MPP2	NM_005374	exon5	c.G318C	p.T106T	GTCGTGCGTCTCC	.	122.0	13.0	59.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
SCRN2	90507	hgsc.bcm.edu	hg19	17	45915920	45915920	+	Silent	SNP	A	A	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	SCRN2	NM_138355	exon6	c.T915C	p.L305L	GGCGGTAAGAAAG	.	121.0	35.0	76.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
ESCO1	114799	hgsc.bcm.edu	hg19	18	19112541	19112541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	ESCO1	NM_052911	exon11	c.G2268T	p.W756C	GCAGCACCAGGCT	.	105.0	41.0	79.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
VAV1	7409	hgsc.bcm.edu	hg19	19	6821672	6821672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	VAV1,caecum,carcinoma,0,2	VAV1	NM_005428	exon3	c.G361A	p.A121T	CCGATCGCCCAGA	.	127.0	43.0	80.0	1.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	8961960	8961960	+	Missense_Mutation	SNP	C	C	T	rs200653636	bycluster	TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	MUC16	NM_024690	exon83	c.G43417A	p.G14473S	GGACACCGCAGAT	.	166.0	49.0	119.0	0.0	.	4315	.	.	.	weak	.	.	PASS	Atlas-SNP
DPF1	8193	hgsc.bcm.edu	hg19	19	38704380	38704380	+	Silent	SNP	T	T	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	DPF1	NM_001135155	exon10	c.A996G	p.L332L	GAATTGTAAACAC	.	152.0	58.0	127.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
CACNG8	59283	hgsc.bcm.edu	hg19	19	54485656	54485656	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	CACNG8	NM_031895	exon4	c.C831G	p.S277R	CTCTAGCTCCCGC	.	22.0	7.0	19.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF582	147948	hgsc.bcm.edu	hg19	19	56896344	56896344	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	ZNF582	NM_144690	exon5	c.G442C	p.E148Q	GCATTTCTTCATG	.	86.0	38.0	65.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
ABHD12	26090	hgsc.bcm.edu	hg19	20	25282895	25282895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	ABHD12	NM_001042472	exon12	c.A1117G	p.K373E	TGTATTTGTGCCT	.	90.0	38.0	70.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
C22orf29	79680	hgsc.bcm.edu	hg19	22	19839753	19839753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	C22orf29	NM_024627	exon3	c.C32A	p.P11H	ATGCGAGGGCCCT	.	106.0	34.0	85.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
SSTR3	6753	hgsc.bcm.edu	hg19	22	37603060	37603060	+	Silent	SNP	G	G	T	rs144127697	alternate_allele	TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	SSTR3	NM_001051	exon2	c.C783A	p.A261A	CACCACGGCCACC	.	146.0	60.0	107.0	0.0	.	42	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
HCFC1	3054	hgsc.bcm.edu	hg19	X	153216893	153216893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	HCFC1	NM_005334	exon22	c.G5425C	p.E1809Q	GGTTTTCCTTCTT	.	46.0	33.0	38.0	0.0	.	284	.	.	.	none	.	.	PASS	Atlas-SNP
CLP1	10978	hgsc.bcm.edu	hg19	11	57427119	57427121	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	CLP1	NM_001142597	exon2	c.170_172del	p.57_58del	.	.	241.0	83.0	168.0	0.0	.	40	.	0.344398	0	none	.	.	PASS	Atlas-Indel,Pindel
JAG1	182	hgsc.bcm.edu	hg19	20	10620302	10620302	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	JAG1	NM_000214	exon26	c.3502delG	p.A1168fs	.	.	161.0	75.0	108.0	0.0	.	213	.	0.465839	0	none	.	.	PASS	Atlas-Indel,Pindel
C11orf24	53838	hgsc.bcm.edu	hg19	11	68029170	68029172	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	C11orf24	NM_022338	exon4	c.1292_1294del	p.431_432del	.	.	125.0	44.0	93.0	0.0	.	35	.	0.352	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF80	7634	hgsc.bcm.edu	hg19	3	113955534	113955536	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	ZNF80	NM_007136	exon1	c.387_389del	p.129_130del	.	.	111.0	48.0	83.0	0.0	.	75	.	0.432432	0	none	.	.	PASS	Atlas-Indel,Pindel
FAT1	2195	hgsc.bcm.edu	hg19	4	187629813	187629814	+	In_Frame_Ins	INS	-	-	AAA	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	FAT1	NM_005245	exon2	c.1169_1170insTTT	p.K390delinsIX	.	.	82.0	34.0	47.0	0.0	.	500	.	0.414634	0	none	.	.	PASS	Atlas-Indel,Pindel
NCKAP5	344148	hgsc.bcm.edu	hg19	2	133540450	133540451	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	NCKAP5	NM_207363	exon14	c.3934_3935insT	p.L1312fs	.	.	167.0	70.0	114.0	0.0	.	322	.	0.419162	0	none	.	.	PASS	Atlas-Indel,Pindel
RACGAP1	29127	hgsc.bcm.edu	hg19	12	50410456	50410456	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	RACGAP1	NM_013277	exon4	c.44delT	p.L15fs	.	.	76.0	39.0	53.0	0.0	.	36	.	0.513158	0	none	.	.	PASS	Atlas-Indel,Pindel
SLC2A13	114134	hgsc.bcm.edu	hg19	12	40441958	40441958	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	SLC2A13	NM_052885	exon2	c.612delA	p.L204fs	.	.	132.0	49.0	73.0	0.0	.	91	.	0.371212	0	none	.	.	PASS	Atlas-Indel,Pindel
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117358121	117358122	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	CTTNBP2	NM_033427	exon22	c.4697_4698del	p.1566_1566del	.	.	252.0	142.0	155.0	0.0	.	200	.	0.563492	0	none	.	.	PASS	Atlas-Indel,Pindel
TMEM174	134288	hgsc.bcm.edu	hg19	5	72469241	72469241	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	TMEM174	NM_153217	exon1	c.170delT	p.M57fs	.	.	99.0	27.0	84.0	0.0	.	22	.	0.273	.	none	.	.	PASS	Pindel
MUC4	4585	hgsc.bcm.edu	hg19	3	195511736	195511783	+	In_Frame_Del	DEL	TGGCCTGTCCTGTGGATGCTGAGGAAGTGTCGGTGACAAGAAGAGGGA	TGGCCTGTCCTGTGGATGCTGAGGAAGTGTCGGTGACAAGAAGAGGGA	-	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	TGGCCTGTCCTGTGGATGCTGAGGAAGTGTCGGTGACAAGAAGAGGGA	TGGCCTGTCCTGTGGATGCTGAGGAAGTGTCGGTGACAAGAAGAGGGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	MUC4	NM_018406	exon2	c.6669_6716del	p.2223_2239del	.	.	198.0	11.0	155.0	0.0	.	1505	.	0.056	.	none	.	.	PASS	Pindel
RNF222	643904	hgsc.bcm.edu	hg19	17	8296546	8296546	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-A8LE-01A-11D-A35Z-10	TCGA-G7-A8LE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f304b920-e25e-445a-b834-d54c241d029b	e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28	.	RNF222	NM_001146684	exon3	c.235delT	p.S79fs	.	.	192.0	62.0	123.0	0.0	.	2	.	0.323	.	none	.	.	PASS	Pindel
