Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
KAZN	23254	hgsc.bcm.edu	hg19	1	15428105	15428105	+	Silent	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	KAZN	NM_201628	exon11	c.G1614A	p.L538L	TGGCCTGTCCCAG	.	73.0	28.0	87.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
SRSF4	6429	hgsc.bcm.edu	hg19	1	29475201	29475201	+	Silent	SNP	G	G	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	SRSF4	NM_005626	exon6	c.C1206G	p.S402S	GGACTGGGAGCGG	.	71.0	24.0	74.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
EFCAB14	9813	hgsc.bcm.edu	hg19	1	47144277	47144277	+	Silent	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	.	NM_014774	exon11	c.G1344A	p.Q448Q	CACGTCCTGGCCA	.	124.0	57.0	130.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA6	54558	hgsc.bcm.edu	hg19	1	48865170	48865170	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	SPATA6	NM_019073	exon7	c.T633G	p.I211M	TGAAGAAATTGTA	.	152.0	58.0	123.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
CACHD1	57685	hgsc.bcm.edu	hg19	1	65107535	65107535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	CACHD1	NM_020925	exon8	c.G886T	p.G296C	TCAGCTGGCATTA	.	174.0	27.0	134.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	hg19	1	117122158	117122158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	IGSF3	NM_001542	exon11	c.C3250T	p.R1084W	TGAGCCGGTAGAG	.	90.0	13.0	68.0	0.0	.	294	.	.	.	none	.	.	PASS	Atlas-SNP
POLR3GL	84265	hgsc.bcm.edu	hg19	1	145457964	145457964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	POLR3GL	NM_032305	exon4	c.C296T	p.P99L	TCAATCGGACCTG	.	88.0	34.0	67.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
CTSK	1513	hgsc.bcm.edu	hg19	1	150778422	150778422	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	CTSK	NM_000396	exon4	c.C314G	p.T105S	TAAAGGGTGTCAT	.	115.0	47.0	99.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152081020	152081020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	TCHH	NM_007113	exon3	c.G4673A	p.R1558H	TCCTCGCGGAATT	.	79.0	23.0	82.0	0.0	.	275	.	.	.	none	.	.	PASS	Atlas-SNP
LYST	1130	hgsc.bcm.edu	hg19	1	235969849	235969849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	LYST	NM_000081	exon6	c.G2587A	p.A863T	AATAAGCTTGCTG	.	149.0	57.0	116.0	0.0	.	370	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF695	57116	hgsc.bcm.edu	hg19	1	247150413	247150413	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ZNF695	NM_020394	exon4	c.A1404T	p.E468D	GCCACATTCTTCA	.	99.0	48.0	69.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF695	57116	hgsc.bcm.edu	hg19	1	247150414	247150414	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ZNF695	NM_020394	exon4	c.A1403T	p.E468V	CCACATTCTTCAC	.	99.0	48.0	68.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
LTBP1	4052	hgsc.bcm.edu	hg19	2	33525581	33525581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	LTBP1	NM_206943	exon21	c.C3299A	p.S1100Y	AGGGCTCCTTCAG	.	99.0	36.0	81.0	0.0	.	317	.	.	.	none	.	.	PASS	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613036	73613036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ALMS1	NM_015120	exon1	c.G40C	p.E14Q	CTGGAGGAGGAGG	.	314.0	26.0	184.0	0.0	.	384	.	.	.	none	.	.	PASS	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613037	73613037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ALMS1	NM_015120	exon1	c.A41T	p.E14V	TGGAGGAGGAGGA	.	321.0	32.0	187.0	0.0	.	384	.	.	.	none	.	.	PASS	Atlas-SNP
DHRS9	10170	hgsc.bcm.edu	hg19	2	169939934	169939934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	DHRS9	NM_005771	exon6	c.A409C	p.N137H	GAAGTGAACCTGT	.	96.0	12.0	93.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
MRPL44	65080	hgsc.bcm.edu	hg19	2	224824598	224824598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	MRPL44	NM_022915	exon2	c.A527G	p.E176G	CTGTGGAGCAGTT	.	98.0	33.0	106.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
ASB18	401036	hgsc.bcm.edu	hg19	2	237103670	237103670	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	ASB18_ENST00000409749,NS,carcinoma,0,1	ASB18	NM_212556	exon6	c.G1246C	p.A416P	CCAAGGCAAAGAG	.	133.0	58.0	169.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
IQCA1	79781	hgsc.bcm.edu	hg19	2	237240213	237240213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	IQCA1	NM_001270585	exon18	c.A2186G	p.N729S	CCTCCATTGCGTT	.	73.0	11.0	74.0	0.0	.	170	.	.	.	none	.	.	PASS	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47058732	47058732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	SETD2	NM_014159	exon21	c.G7546A	p.V2516I	TCATAACACCGTG	.	72.0	67.0	47.0	0.0	.	721	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJB8	165721	hgsc.bcm.edu	hg19	3	128181520	128181520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	DNAJB8	NM_153330	exon3	c.A569G	p.N190S	TGGCCATTGATCA	.	87.0	73.0	76.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
TMCC1	23023	hgsc.bcm.edu	hg19	3	129390024	129390024	+	Silent	SNP	A	A	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	TMCC1	NM_001017395	exon4	c.T660A	p.S220S	ATCCACAGAGTCT	.	73.0	5.0	53.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195509651	195509651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	MUC4_ENST00000463781,trunk,malignant_melanoma,0,2	MUC4	NM_018406	exon2	c.C8800A	p.L2934I	AGGAAAGGCTGGT	.	133.0	7.0	92.0	0.0	.	1505	.	.	.	none	.	.	PASS	Atlas-SNP
EVC	2121	hgsc.bcm.edu	hg19	4	5812077	5812077	+	Silent	SNP	A	A	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	EVC	NM_153717	exon20	c.A2794C	p.R932R	CCCCTAAGGACTA	.	226.0	96.0	230.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
CCNI	10983	hgsc.bcm.edu	hg19	4	77969741	77969741	+	Silent	SNP	A	A	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	CCNI	NM_006835	exon7	c.T765C	p.P255P	ATTCAGAGGCAGG	.	103.0	40.0	70.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87671752	87671752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	PTPN13	NM_006264	exon18	c.T2780C	p.V927A	TATCAGTTCAAGC	.	296.0	127.0	247.0	1.0	.	203	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123226024	123226024	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	KIAA1109	NM_015312	exon54	c.A9558C	p.E3186D	ACTGGAACTTTCT	.	115.0	49.0	121.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
ANXA10	11199	hgsc.bcm.edu	hg19	4	169099042	169099042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ANXA10	NM_007193	exon8	c.T536C	p.V179A	TCCAGGTCCTATG	.	124.0	21.0	83.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
MCC	4163	hgsc.bcm.edu	hg19	5	112399744	112399744	+	Missense_Mutation	SNP	G	G	C	rs147869500	alternate_allele	TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	MCC	NM_001085377	exon14	c.C2150G	p.A717G	GCAAAGGCTCCCC	.	150.0	67.0	150.0	0.0	.	234	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
SNCAIP	9627	hgsc.bcm.edu	hg19	5	121786598	121786598	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	SNCAIP	NM_005460	exon10	c.G2056T	p.E686X	AACTCTGAGGACC	.	83.0	37.0	83.0	0.0	.	308	.	.	.	none	.	.	PASS	Atlas-SNP
RNF14	9604	hgsc.bcm.edu	hg19	5	141354465	141354465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	RNF14	NM_001201365	exon4	c.C251A	p.P84Q	ATTATCCATCCTC	.	102.0	57.0	89.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
FOXQ1	94234	hgsc.bcm.edu	hg19	6	1313368	1313368	+	Silent	SNP	G	G	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	FOXQ1	NM_033260	exon1	c.G429T	p.A143A	GCTGGCGGAGATC	.	110.0	43.0	82.0	0.0	.	8	.	.	.	none	.	.	PASS	Atlas-SNP
RIOK1	83732	hgsc.bcm.edu	hg19	6	7395375	7395375	+	Silent	SNP	A	A	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	RIOK1	NM_031480	exon3	c.A366G	p.L122L	TAATTTAGGTGAG	.	240.0	90.0	193.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0408	9729	hgsc.bcm.edu	hg19	6	127767703	127767703	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	KIAA0408	NM_014702	exon5	c.T1761G	p.N587K	GGTCCAATTATCC	.	73.0	30.0	52.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
GPNMB	10457	hgsc.bcm.edu	hg19	7	23300201	23300201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	GPNMB	NM_002510	exon6	c.A827G	p.Y276C	TCAATTATTCTAC	.	94.0	40.0	91.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
BAZ1B	9031	hgsc.bcm.edu	hg19	7	72883924	72883924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	BAZ1B	NM_032408	exon9	c.A2789G	p.H930R	CTGTCATGTACCC	.	84.0	30.0	78.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82544242	82544242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	PCLO	NM_014510	exon7	c.G13060T	p.V4354L	GGGCCACAATTGG	.	95.0	40.0	89.0	0.0	.	1506	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM176A	55365	hgsc.bcm.edu	hg19	7	150499366	150499366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	TMEM176A	NM_018487	exon3	c.T238C	p.Y80H	CGCGACTACACCC	.	49.0	21.0	36.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC25	55246	hgsc.bcm.edu	hg19	8	27605752	27605752	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	CCDC25	NM_018246	exon7	c.C393G	p.N131K	TAATCGGTTCAGG	.	83.0	4.0	82.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
ATP6V1H	51606	hgsc.bcm.edu	hg19	8	54628574	54628574	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ATP6V1H	NM_015941	exon14	c.G1402C	p.G468R	GCTTGCCAAGGTA	.	162.0	57.0	191.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
SNX16	64089	hgsc.bcm.edu	hg19	8	82751914	82751914	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	SNX16	NM_152836	exon2	c.G308C	p.W103S	TCTTCCCAATTCA	.	78.0	33.0	85.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF251	90987	hgsc.bcm.edu	hg19	8	145947779	145947779	+	Silent	SNP	T	T	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ZNF251	NM_138367	exon5	c.A1266G	p.E422E	TACGTGTTCAGTA	.	89.0	18.0	74.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
RPL35	11224	hgsc.bcm.edu	hg19	9	127622502	127622502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	RPL35	NM_007209	exon3	c.T182C	p.I61T	TGGTTAATAACTG	.	92.0	37.0	66.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
LAMC3	10319	hgsc.bcm.edu	hg19	9	133901739	133901739	+	Silent	SNP	C	C	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	LAMC3	NM_006059	exon2	c.C441A	p.I147I	TGCCATCTACAAG	.	137.0	53.0	146.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	327182	327182	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	DIP2C	NM_014974	exon36	c.T4376G	p.I1459S	GTCTCAATGTCGA	.	84.0	39.0	74.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
C10orf67	256815	hgsc.bcm.edu	hg19	10	23622020	23622020	+	Silent	SNP	A	A	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	C10orf67,NS,carcinoma,0,1	C10orf67	NM_153714	exon2	c.T301C	p.L101L	AACTCAATTCTTT	.	136.0	61.0	115.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
WAC	51322	hgsc.bcm.edu	hg19	10	28906628	28906628	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	WAC	NM_016628	exon13	c.C1789G	p.H597D	ACTATTCACATGT	.	240.0	105.0	264.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
CUEDC2	79004	hgsc.bcm.edu	hg19	10	104184908	104184908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	CUEDC2	NM_024040	exon2	c.C38T	p.A13V	ACAAAGGCAAGGA	.	35.0	13.0	16.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
COL17A1	1308	hgsc.bcm.edu	hg19	10	105793812	105793812	+	Silent	SNP	T	T	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	COL17A1	NM_000494	exon52	c.A4047T	p.A1349A	TGCTGCTGCCCCA	.	258.0	98.0	212.0	0.0	.	149	.	.	.	none	.	.	PASS	Atlas-SNP
RRM1	6240	hgsc.bcm.edu	hg19	11	4144483	4144483	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	RRM1	NM_001033	exon12	c.C1189T	p.Q397X	GAGTCTCAGACGG	.	217.0	98.0	169.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM3	10612	hgsc.bcm.edu	hg19	11	6470304	6470304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	TRIM3	NM_001248006	exon12	c.C2189A	p.A730D	GCATCAGCCACCA	.	95.0	5.0	63.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
HPS5	11234	hgsc.bcm.edu	hg19	11	18333543	18333543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	HPS5	NM_181507	exon3	c.G137T	p.W46L	GCCAACCATTTCC	.	82.0	35.0	86.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
SLC3A2	6520	hgsc.bcm.edu	hg19	11	62652107	62652107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	SLC3A2	NM_001012662	exon8	c.G1069A	p.A357T	TAGGATGCATCCT	.	67.0	25.0	85.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
SLC3A2	6520	hgsc.bcm.edu	hg19	11	62652108	62652108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	SLC3A2	NM_001012662	exon8	c.C1070T	p.A357V	AGGATGCATCCTC	.	69.0	25.0	83.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
NUMA1	4926	hgsc.bcm.edu	hg19	11	71720100	71720100	+	Silent	SNP	A	A	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	NUMA1	NM_006185	exon19	c.T4971C	p.H1657H	TAGCTCATGGCCC	.	59.0	27.0	49.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
INPPL1	3636	hgsc.bcm.edu	hg19	11	71942228	71942228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	INPPL1	NM_001567	exon12	c.C1492T	p.R498C	GATTACCGCCCGG	.	36.0	16.0	31.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
RAB6A	5870	hgsc.bcm.edu	hg19	11	73471628	73471628	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	RAB6A	NM_002869	exon1	c.T53A	p.F18Y	CCCAGGAACACCA	.	248.0	99.0	226.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
C2CD3	26005	hgsc.bcm.edu	hg19	11	73850650	73850650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	C2CD3	NM_015531	exon4	c.G707C	p.R236T	AATTACCTCGGAG	.	84.0	23.0	91.0	0.0	.	288	.	.	.	none	.	.	PASS	Atlas-SNP
FUT4	2526	hgsc.bcm.edu	hg19	11	94277973	94277973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	FUT4	NM_002033	exon1	c.A674T	p.D225V	TCACCGACCGCGC	.	32.0	14.0	53.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
MLL	4297	hgsc.bcm.edu	hg19	11	118390700	118390700	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	MLL	NM_001197104	exon33	c.C11350G	p.L3784V	AACTTCCTGGCTT	.	66.0	38.0	42.0	0.0	.	548	.	.	.	none	.	.	PASS	Atlas-SNP
CLEC4C	170482	hgsc.bcm.edu	hg19	12	7890038	7890038	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	CLEC4C	NM_130441	exon5	c.C368G	p.T123S	TCCCTGGTGTTGA	.	53.0	19.0	53.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
RASSF3	283349	hgsc.bcm.edu	hg19	12	65078565	65078565	+	Splice_Site	SNP	A	A	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	RASSF3	NM_178169	exon2	c.112-2A>C	.	TCTTCTAGGATGT	.	65.0	30.0	71.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
RAB21	23011	hgsc.bcm.edu	hg19	12	72176413	72176413	+	Silent	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	RAB21	NM_014999	exon6	c.G510A	p.E170E	AATTGAGGAACTC	.	201.0	88.0	174.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
GALNT4	8693	hgsc.bcm.edu	hg19	12	89917333	89917333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	GALNT4	NM_003774	exon1	c.G994A	p.E332K	ACACTTCCATTCC	.	101.0	37.0	106.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
MYBPC1	4604	hgsc.bcm.edu	hg19	12	102043137	102043137	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	MYBPC1	NM_206819	exon15	c.G1296C	p.K432N	AACAAAGGCTGAT	.	100.0	41.0	83.0	0.0	.	235	.	.	.	none	.	.	PASS	Atlas-SNP
AMER2	219287	hgsc.bcm.edu	hg19	13	25744451	25744451	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	.	NM_152704	exon1	c.T1307A	p.L436Q	TCCTGTAGATAGG	.	65.0	36.0	48.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
FRY	10129	hgsc.bcm.edu	hg19	13	32705963	32705963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	FRY	NM_023037	exon8	c.C871T	p.L291F	GCCTCTCTTCAGT	.	139.0	55.0	110.0	0.0	.	312	.	.	.	none	.	.	PASS	Atlas-SNP
RTN1	6252	hgsc.bcm.edu	hg19	14	60074162	60074162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	RTN1	NM_021136	exon4	c.T1814C	p.F605S	CTCCCAAACACGA	.	81.0	40.0	78.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
ZFP36L1	677	hgsc.bcm.edu	hg19	14	69256832	69256832	+	Silent	SNP	G	G	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ZFP36L1	NM_001244701	exon3	c.C642A	p.R214R	CAGGCTGCGGAGC	.	94.0	38.0	68.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
SERPINA4	5267	hgsc.bcm.edu	hg19	14	95030170	95030170	+	Silent	SNP	C	C	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	SERPINA4	NM_006215	exon2	c.C351A	p.V117V	CGATGTCCATAGG	.	50.0	23.0	26.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28459417	28459417	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	HERC2	NM_004667	exon41	c.G6360C	p.E2120D	CGTGGACTCTGAG	.	98.0	47.0	72.0	0.0	.	501	.	.	.	none	.	.	PASS	Atlas-SNP
DMXL2	23312	hgsc.bcm.edu	hg19	15	51792075	51792075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	DMXL2	NM_001174116	exon18	c.G3346A	p.E1116K	CCCACTCTGATCC	.	128.0	53.0	95.0	0.0	.	262	.	.	.	none	.	.	PASS	Atlas-SNP
CELF6	60677	hgsc.bcm.edu	hg19	15	72581548	72581548	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	CELF6	NM_001172684	exon8	c.C961G	p.L321V	GGGTCAGAGGGCC	.	65.0	30.0	47.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	hg19	15	90349809	90349809	+	Silent	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ANPEP	NM_001150	exon2	c.C6T	p.A2A	GCCCTTGGCCATG	.	58.0	7.0	63.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
CHTF18	63922	hgsc.bcm.edu	hg19	16	842327	842327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	CHTF18	NM_022092	exon10	c.G1306A	p.E436K	ATCGATGAGATCG	.	166.0	24.0	172.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
C16orf72	29035	hgsc.bcm.edu	hg19	16	9210571	9210571	+	Silent	SNP	A	A	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	C16orf72	NM_014117	exon4	c.A630G	p.P210P	TACCCCAGGCTCT	.	106.0	47.0	108.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
CNGB1	1258	hgsc.bcm.edu	hg19	16	57957180	57957180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	CNGB1	NM_001297	exon18	c.C1640T	p.T547I	CACTCAGTGTCCT	.	36.0	16.0	30.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
GUCY2D	3000	hgsc.bcm.edu	hg19	17	7907255	7907255	+	Silent	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	GUCY2D	NM_000180	exon3	c.C807T	p.T269T	CCTGACCGATGGC	.	106.0	20.0	106.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
TMIGD1	388364	hgsc.bcm.edu	hg19	17	28656425	28656425	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	TMIGD1	NM_206832	exon3	c.C205T	p.R69X	CCTCTCGGTACCA	.	91.0	5.0	73.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
NF1	4763	hgsc.bcm.edu	hg19	17	29483033	29483033	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	NF1	NM_001128147	exon2	c.T93G	p.H31Q	CACACATACCAAA	.	201.0	84.0	141.0	0.0	.	1586	.	.	.	none	.	.	PASS	Atlas-SNP
PEX12	5193	hgsc.bcm.edu	hg19	17	33904061	33904061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	PEX12	NM_000286	exon2	c.A676G	p.R226G	ACCTCCTGGCTGG	.	50.0	20.0	28.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
PEX12	5193	hgsc.bcm.edu	hg19	17	33904062	33904062	+	Silent	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	PEX12	NM_000286	exon2	c.C675T	p.A225A	CCTCCTGGCTGGT	.	50.0	20.0	29.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP17-1	83902	hgsc.bcm.edu	hg19	17	39471747	39471747	+	Silent	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	KRTAP17-1	NM_031964	exon1	c.C156T	p.C52C	TCCGCAGCAGCTG	.	59.0	28.0	72.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
KIF18B	146909	hgsc.bcm.edu	hg19	17	43003847	43003847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	KIF18B	NM_001264573	exon15	c.G2423A	p.R808H	CGGCTGCGGCCAT	.	56.0	16.0	66.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80047168	80047168	+	Silent	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	FASN	NM_004104	exon13	c.C2058T	p.F686F	CTCCATGAAGTAG	.	93.0	51.0	98.0	0.0	.	154	.	.	.	none	.	.	PASS	Atlas-SNP
RALBP1	10928	hgsc.bcm.edu	hg19	18	9535920	9535920	+	Silent	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	RALBP1	NM_006788	exon10	c.G1953A	p.K651K	TAGGAAGGAGACG	.	174.0	65.0	192.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
PPP4R1	9989	hgsc.bcm.edu	hg19	18	9570630	9570630	+	Silent	SNP	A	A	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	PPP4R1	NM_001042388	exon11	c.T1098A	p.T366T	TGAAGGAGTATCC	.	59.0	33.0	43.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
DOT1L	84444	hgsc.bcm.edu	hg19	19	2210838	2210838	+	Silent	SNP	G	G	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	DOT1L	NM_032482	exon14	c.G1335T	p.A445A	GACGGCGGCCTCC	.	119.0	55.0	126.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9011358	9011358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	MUC16	NM_024690	exon36	c.C38875A	p.P12959T	TGTAGGGGCCCAG	.	96.0	23.0	87.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
HOOK2	29911	hgsc.bcm.edu	hg19	19	12878236	12878236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	HOOK2	NM_001100176	exon14	c.C1346T	p.A449V	TCTGCGGCTAAGT	.	75.0	29.0	67.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
MYO9B	4650	hgsc.bcm.edu	hg19	19	17270210	17270210	+	Silent	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	MYO9B	NM_001130065	exon8	c.G1335A	p.K445K	GGTGAAGCGAGAA	.	86.0	36.0	78.0	0.0	.	264	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF574	64763	hgsc.bcm.edu	hg19	19	42583233	42583233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ZNF574	NM_022752	exon2	c.C475T	p.P159S	CCTGCCCCTGTTG	.	90.0	33.0	100.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	hg19	19	55718205	55718205	+	Silent	SNP	A	A	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	PTPRH	NM_001161440	exon3	c.T204G	p.T68T	GTCTCCAGTACAC	.	180.0	65.0	136.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
DUXA	503835	hgsc.bcm.edu	hg19	19	57665813	57665813	+	Silent	SNP	A	A	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	DUXA	NM_001012729	exon6	c.T582C	p.S194S	AGAGTCACTAGTG	.	98.0	39.0	101.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
TMC2	117532	hgsc.bcm.edu	hg19	20	2618130	2618130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	TMC2	NM_080751	exon19	c.T2396C	p.V799A	GTGAAGTTGAGAA	.	75.0	8.0	66.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
PARD6B	84612	hgsc.bcm.edu	hg19	20	49354458	49354458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	PARD6B	NM_032521	exon2	c.A131G	p.Y44C	AGTTTTATGGATT	.	132.0	50.0	104.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
ATP9A	10079	hgsc.bcm.edu	hg19	20	50217801	50217801	+	Silent	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ATP9A	NM_006045	exon28	c.G3093A	p.K1031K	CAGGTACTTGAGG	.	148.0	8.0	113.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
SLC7A4	6545	hgsc.bcm.edu	hg19	22	21385638	21385638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	SLC7A4	NM_004173	exon2	c.C464G	p.T155S	ACGTGGGTCTCAG	.	34.0	11.0	30.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
MN1	4330	hgsc.bcm.edu	hg19	22	28194900	28194900	+	Silent	SNP	T	T	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	MN1	NM_002430	exon1	c.A1632G	p.Q544Q	CTGCTGTTGCTGT	.	63.0	7.0	39.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
RANGAP1	5905	hgsc.bcm.edu	hg19	22	41650402	41650402	+	Silent	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	RANGAP1,NS,carcinoma,0,2	RANGAP1	NM_002883	exon11	c.G1170A	p.E390E	CTCCTCCTCTTCT	.	51.0	4.0	50.0	1.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
PLXNB2	23654	hgsc.bcm.edu	hg19	22	50722099	50722099	+	Silent	SNP	G	G	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	PLXNB2	NM_012401	exon15	c.C2502T	p.D834D	CTGGATGTCCCCT	.	70.0	32.0	76.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
ZBED1	9189	hgsc.bcm.edu	hg19	X	2407032	2407032	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ZBED1	NM_001171135	exon2	c.T1729G	p.S577A	TCTGGGACTTGAA	.	72.0	46.0	95.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
GPR34	2857	hgsc.bcm.edu	hg19	X	41555847	41555847	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	GPR34	NM_001097579	exon3	c.T961A	p.C321S	AATAGTTGCTTAG	.	131.0	99.0	117.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	6665	6665	+	Silent	SNP	C	C	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	.	ENST00000361624	exon1	c.C762T	p.I254I	AATAATCTCCCAT	.	104.0	79.0	16.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF490	57474	hgsc.bcm.edu	hg19	19	12691823	12691824	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ZNF490	NM_020714	exon5	c.1066_1067del	p.356_356del	.	.	84.0	40.0	78.0	0.0	.	42	.	0.47619	0	none	.	.	PASS	Atlas-Indel,Pindel
NPC2	10577	hgsc.bcm.edu	hg19	14	74953056	74953057	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	NPC2	NM_006432	exon2	c.166_167del	p.56_56del	.	.	62.0	29.0	54.0	0.0	.	9	.	0.467742	0	none	.	.	PASS	Atlas-Indel,Pindel
IPP	3652	hgsc.bcm.edu	hg19	1	46206791	46206792	+	Frame_Shift_Ins	INS	-	-	CC	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	IPP	NM_001145349	exon3	c.506_507insGG	p.V169fs	.	.	133.0	56.0	105.0	0.0	.	66	.	0.421053	0	none	.	.	PASS	Atlas-Indel,Pindel
GLTSCR1	29998	hgsc.bcm.edu	hg19	19	48197404	48197404	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	GLTSCR1	NM_015711	exon8	c.2315delG	p.G772fs	.	.	82.0	24.0	91.0	0.0	.	79	.	0.292683	0	none	.	.	PASS	Atlas-Indel,Pindel
LRIG1	26018	hgsc.bcm.edu	hg19	3	66431274	66431274	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	LRIG1	NM_015541	exon18	c.2783delG	p.R928fs	.	.	59.0	21.0	49.0	0.0	.	138	.	0.355932	0	none	.	.	PASS	Atlas-Indel,Pindel
SETD2	29072	hgsc.bcm.edu	hg19	3	47058730	47058730	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	SETD2	NM_014159	exon21	c.7549delA	p.M2517X	.	.	71.0	65.0	46.0	0.0	.	721	.	0.915493	0	none	.	.	PASS	Atlas-INDEL
FMNL3	91010	hgsc.bcm.edu	hg19	12	50047553	50047554	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	FMNL3_ENST00000335154,colon,carcinoma,0,2	FMNL3	NM_175736	exon12	c.1176_1177insAA	p.N392fs	.	.	83.0	30.0	91.0	0.0	.	137	.	0.361446	0	none	.	.	PASS	Atlas-Indel,Pindel
BSG	682	hgsc.bcm.edu	hg19	19	581506	581506	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	BSG	NM_001728	exon6	c.983delT	p.F328fs	.	.	77.0	31.0	77.0	0.0	.	48	.	0.402597	0	none	.	.	PASS	Atlas-Indel,Pindel
TRIM53AP	642569	hgsc.bcm.edu	hg19	11	89732825	89732825	+	RNA	DEL	G	G	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	.	.	.	.	.	.	.	493.0	103.0	490.0	0.0	.	.	.	0.208925	0	none	.	.	PASS	Atlas-INDEL
SCFD1	23256	hgsc.bcm.edu	hg19	14	31142532	31142533	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	SCFD1	NM_016106	exon12	c.1065_1066insAA	p.V355fs	.	.	289.0	112.0	251.0	0.0	.	43	.	0.387543	0	none	.	.	PASS	Atlas-Indel,Pindel
PEX12	5193	hgsc.bcm.edu	hg19	17	33904058	33904058	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	PEX12	NM_000286	exon2	c.680delG	p.S227fs	.	.	48.0	19.0	29.0	0.0	.	36	.	0.395833	0	none	.	.	PASS	Atlas-INDEL
KIF4B	285643	hgsc.bcm.edu	hg19	5	154395330	154395330	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	KIF4B	NM_001099293	exon1	c.1910delA	p.N637fs	.	.	413.0	173.0	321.0	0.0	.	307	.	0.418886	0	none	.	.	PASS	Atlas-Indel,Pindel
PRPF40A	55660	hgsc.bcm.edu	hg19	2	153551067	153551069	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	PRPF40A	NM_017892	exon3	c.285_287del	p.95_96del	.	.	446.0	45.0	448.0	0.0	.	149	.	0.100897	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF596	169270	hgsc.bcm.edu	hg19	8	195728	195728	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	ZNF596	NM_001042415	exon6	c.880delC	p.L294fs	.	.	138.0	58.0	113.0	0.0	.	34	.	0.42029	0	none	.	.	PASS	Atlas-Indel,Pindel
STRIP1	85369	hgsc.bcm.edu	hg19	1	110577332	110577364	+	In_Frame_Del	DEL	CCGCCGGCAGCCGCACAGCCACCACCCGGGGCA	CCGCCGGCAGCCGCACAGCCACCACCCGGGGCA	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	CCGCCGGCAGCCGCACAGCCACCACCCGGGGCA	CCGCCGGCAGCCGCACAGCCACCACCCGGGGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	STRIP1	NM_033088	exon1	c.72_104del	p.24_35del	.	.	229.0	12.0	208.0	0.0	.	1	.	0.052	.	none	.	.	PASS	Pindel
SETD2	29072	hgsc.bcm.edu	hg19	3	47058731	47058732	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	SETD2	NM_014159	exon21	c.7547_7548del	p.2516_2516del	.	.	72.0	43.0	46.0	0.0	.	721	.	0.597	.	none	.	.	PASS	Pindel
PBRM1	55193	hgsc.bcm.edu	hg19	3	52678783	52678784	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	PBRM1	NM_018313	exon9	c.836_837insA	p.I279fs	.	.	40.0	25.0	44.0	0.0	.	1252	.	0.625	.	none	.	.	PASS	Pindel
PEX12	5193	hgsc.bcm.edu	hg19	17	33904058	33904062	+	Frame_Shift_Del	DEL	TCCTG	TCCTG	-	novel		TCGA-GL-A9DE-01A-11D-A36X-10	TCGA-GL-A9DE-10A-01D-A370-10	TCCTG	TCCTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	be0270c7-7799-4045-9a8c-3878512a73ef	bfa8f265-7a77-40f4-89f4-2102820fcdee	.	PEX12	NM_000286	exon2	c.676_680del	p.226_227del	.	.	49.0	11.0	30.0	0.0	.	36	.	0.224	.	none	.	.	PASS	Pindel
