Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
DDI2	84301	hgsc.bcm.edu	hg19	1	15956850	15956850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	DDI2	NM_032341	exon3	c.C299A	p.A100D	GTATAGCTGTGCC	.	112.0	24.0	131.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
ST3GAL3	6487	hgsc.bcm.edu	hg19	1	44290408	44290408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	ST3GAL3	NM_174963	exon5	c.C260A	p.P87Q	GCTCACCGAGGAC	.	141.0	8.0	179.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
FAM151A	338094	hgsc.bcm.edu	hg19	1	55077353	55077353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	FAM151A,right_upper_lobe,carcinoma,-1,1	FAM151A	NM_176782	exon6	c.G866T	p.R289L	TTATCCCGGACGT	.	134.0	6.0	172.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC88A	55704	hgsc.bcm.edu	hg19	2	55523606	55523606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	CCDC88A	NM_001254943	exon30	c.A4876G	p.S1626G	GCAGGCTAAATTC	.	68.0	19.0	104.0	0.0	.	336	.	.	.	none	.	.	PASS	Atlas-SNP
FAM161A	84140	hgsc.bcm.edu	hg19	2	62067675	62067675	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	FAM161A	NM_032180	exon3	c.T464A	p.M155K	GATGTCATTAATG	.	67.0	8.0	90.0	0.0	.	200	.	.	.	none	.	.	PASS	Atlas-SNP
MAT2A	4144	hgsc.bcm.edu	hg19	2	85770091	85770091	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MAT2A	NM_005911	exon8	c.A1019T	p.K340M	CTCAGAAGAGTGA	.	143.0	28.0	172.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
PHOSPHO2	493911	hgsc.bcm.edu	hg19	2	170557930	170557930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	PHOSPHO2	NM_001199286	exon4	c.A449G	p.N150S	CAAAGAATCTTTG	.	75.0	13.0	90.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
OR6B2	389090	hgsc.bcm.edu	hg19	2	240969643	240969643	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	OR6B2	NM_001005853	exon1	c.C204G	p.F68L	CTCCAGGAAAGAC	.	168.0	20.0	242.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
ERC2	26059	hgsc.bcm.edu	hg19	3	56026194	56026194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	ERC2_ENST00000288221,caecum,carcinoma,0,2	ERC2	NM_015576	exon11	c.C2146A	p.R716S	CGTCGCGGTAGTA	.	317.0	14.0	308.0	1.0	.	221	.	.	.	none	.	.	PASS	Atlas-SNP
THAP9	79725	hgsc.bcm.edu	hg19	4	83839493	83839493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	THAP9	NM_024672	exon5	c.G2128A	p.D710N	CTGTCAGATCATA	.	107.0	26.0	101.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
NR3C2	4306	hgsc.bcm.edu	hg19	4	149075914	149075914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	NR3C2,colon,carcinoma,0,1	NR3C2	NM_000901	exon5	c.C2153G	p.S718W	TTGACCGAGGGTT	.	177.0	30.0	289.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
SREK1	140890	hgsc.bcm.edu	hg19	5	65466769	65466769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SREK1	NM_001077199	exon9	c.C1478T	p.S493F	GTAGTTCCAGCAG	.	69.0	17.0	63.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
STK32A	202374	hgsc.bcm.edu	hg19	5	146752790	146752790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	STK32A	NM_001112724	exon10	c.C836A	p.P279Q	ACTTCCCGTATAT	.	242.0	10.0	268.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
SCUBE3	222663	hgsc.bcm.edu	hg19	6	35213840	35213840	+	Missense_Mutation	SNP	C	C	A	rs142335824	bycluster;by1000genomes;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SCUBE3	NM_152753	exon20	c.C2719A	p.R907S	AGCGCCCGTGGCT	.	186.0	8.0	278.0	0.0	.	99	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
SGK1	6446	hgsc.bcm.edu	hg19	6	134495704	134495704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SGK1	NM_001143676	exon4	c.A382G	p.M128V	GACCCATCCTCCT	.	51.0	7.0	70.0	0.0	.	387	.	.	.	none	.	.	PASS	Atlas-SNP
MLL5	55904	hgsc.bcm.edu	hg19	7	104748161	104748161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MLL5	NM_018682	exon21	c.A3257T	p.D1086V	TGAGGGACCTGAC	.	65.0	22.0	54.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
TTC26	79989	hgsc.bcm.edu	hg19	7	138822639	138822639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	TTC26	NM_001144920	exon3	c.T188C	p.I63T	TGTGGATTGGATA	.	110.0	7.0	82.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
AGPAT6	137964	hgsc.bcm.edu	hg19	8	41467379	41467379	+	Silent	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	AGPAT6,caecum,carcinoma,0,1	AGPAT6	NM_178819	exon4	c.C441T	p.S147S	GCTGAGCAGAACC	.	124.0	30.0	150.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
CDC37L1	55664	hgsc.bcm.edu	hg19	9	4706079	4706079	+	Silent	SNP	A	A	G	rs200977934	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	CDC37L1	NM_017913	exon7	c.A981G	p.E327E	TAAAGAAGATGAT	.	46.0	6.0	50.0	0.0	.	19	.	.	.	alt	.	.	PASS	Atlas-SNP
CACFD1	11094	hgsc.bcm.edu	hg19	9	136333115	136333115	+	Silent	SNP	G	G	A	rs150411088		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	CACFD1	NM_017586	exon4	c.G393A	p.T131T	TGCTACGGGGGTG	.	59.0	16.0	68.0	0.0	.	1	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
ARHGAP19	84986	hgsc.bcm.edu	hg19	10	98995038	98995038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	ARHGAP19	NM_032900	exon9	c.G1220T	p.R407L	GGTTCTCGCCCTG	.	198.0	8.0	217.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
NDUFS3	4722	hgsc.bcm.edu	hg19	11	47604000	47604000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	NDUFS3	NM_004551	exon6	c.C607T	p.P203S	GACTTTCCTCTAT	.	378.0	86.0	512.0	1.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF17	9828	hgsc.bcm.edu	hg19	11	73020521	73020521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	ARHGEF17	NM_014786	exon1	c.G838T	p.D280Y	GACGACGACCGAG	.	50.0	13.0	82.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
KCTD14	65987	hgsc.bcm.edu	hg19	11	77727916	77727916	+	Missense_Mutation	SNP	C	C	A	rs372373172	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	KCTD14	NM_023930	exon2	c.G491T	p.R164L	GACTTCCGTGCTG	.	195.0	8.0	227.0	0.0	.	32	.	.	.	alt	.	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49446075	49446075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MLL2	NM_003482	exon10	c.C1391T	p.A464V	CGTGATGCCTCAG	.	180.0	48.0	166.0	0.0	.	1173	.	.	.	none	.	.	PASS	Atlas-SNP
HSPB8	26353	hgsc.bcm.edu	hg19	12	119617182	119617182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	HSPB8	NM_014365	exon1	c.G65T	p.R22L	CCTTCCGGGACTC	.	271.0	14.0	315.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
OGFOD2	79676	hgsc.bcm.edu	hg19	12	123463804	123463804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	OGFOD2	NM_024623	exon8	c.C784G	p.R262G	TGCTGCCGTGAGC	.	70.0	13.0	86.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
BTBD7	55727	hgsc.bcm.edu	hg19	14	93730186	93730186	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	BTBD7	NM_001002860	exon4	c.T1316G	p.F439C	TCATAAAAAACAT	.	75.0	16.0	89.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	hg19	18	43440155	43440155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	EPG5	NM_020964	exon40	c.T6923C	p.L2308P	GTTAAAAGGGGCA	.	90.0	18.0	145.0	0.0	.	199	.	.	.	none	.	.	PASS	Atlas-SNP
LPHN1	22859	hgsc.bcm.edu	hg19	19	14263148	14263148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	LPHN1	NM_001008701	exon22	c.T3637C	p.S1213P	GCGAGGAGGGATT	.	69.0	7.0	110.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
KCNQ2	3785	hgsc.bcm.edu	hg19	20	62070959	62070959	+	Silent	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	KCNQ2	NM_172106	exon6	c.C919T	p.L307L	CAGGCAGCGCGAA	.	75.0	28.0	89.0	0.0	.	201	.	.	.	none	.	.	PASS	Atlas-SNP
L3MBTL2	83746	hgsc.bcm.edu	hg19	22	41621916	41621916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	L3MBTL2	NM_031488	exon12	c.A1475G	p.K492R	GTCAGAAGAATGA	.	70.0	6.0	97.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	31152282	31152282	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	DMD	NM_004006	exon77	c.G10951C	p.D3651H	TTGTGTCCTGGGG	.	39.0	13.0	59.0	0.0	.	2127	.	.	.	none	.	.	PASS	Atlas-SNP
PSMD1	5707	hgsc.bcm.edu	hg19	2	231943417	231943417	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	PSMD1	NM_001191037	exon10	c.1115delC	p.A372fs	.	.	85.0	12.0	92.0	0.0	.	77	.	0.141176	0	none	.	.	PASS	Atlas-INDEL
OR51A7	119687	hgsc.bcm.edu	hg19	11	4928976	4928976	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	OR51A7	NM_001004749	exon1	c.376delA	p.I126fs	.	.	117.0	15.0	147.0	0.0	.	86	.	0.128205	0	none	.	.	PASS	Atlas-INDEL
CYP4F2	8529	hgsc.bcm.edu	hg19	19	16003152	16003153	+	Frame_Shift_Ins	INS	-	-	ATAT	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	CYP4F2	NM_001082	exon5	c.492_493insATAT	p.M164fs	.	.	194.0	22.0	286.0	0.0	.	97	.	0.113402	0	none	.	.	PASS	Atlas-INDEL
DZIP3	9666	hgsc.bcm.edu	hg19	3	108324275	108324275	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	DZIP3	NM_014648	exon2	c.21delA	p.E7fs	.	.	96.0	20.0	94.0	0.0	.	111	.	0.208333	0	none	.	.	PASS	Atlas-INDEL
LIPH	200879	hgsc.bcm.edu	hg19	3	185241864	185241865	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	LIPH	NM_139248	exon5	c.713_714del	p.238_238del	.	.	63.0	24.0	60.0	0.0	.	56	.	0.380952	0	none	.	.	PASS	Atlas-INDEL
MIDN	90007	hgsc.bcm.edu	hg19	19	1257046	1257048	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MIDN	NM_177401	exon8	c.1181_1183del	p.394_395del	.	.	40.0	10.0	70.0	0.0	.	34	.	0.25	0	none	.	.	PASS	Atlas-INDEL
OGN	4969	hgsc.bcm.edu	hg19	9	95148550	95148550	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	OGN	NM_033014	exon6	c.660delG	p.L220fs	.	.	50.0	16.0	55.0	0.0	.	26	.	0.32	0	none	.	.	PASS	Atlas-INDEL
