Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PRDM2	7799	hgsc.bcm.edu	hg19	1	14068533	14068533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PRDM2	NM_015866	exon5	c.G265T	p.D89Y	TGCATTGATGCCA	.	65.0	35.0	76.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
CAPN13	92291	hgsc.bcm.edu	hg19	2	30966306	30966306	+	Missense_Mutation	SNP	C	C	A	rs372490936	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CAPN13	NM_144575	exon13	c.G1388T	p.R463L	TTTCTCCGTGTCT	.	458.0	21.0	446.0	0.0	.	70	.	.	.	alt	.	.	PASS	Atlas-SNP
SRSF7	6432	hgsc.bcm.edu	hg19	2	38978383	38978383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	SRSF7	NM_001195446	exon1	c.C16T	p.R6W	CGTACCGCCCGTA	.	88.0	34.0	128.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
SRSF7	6432	hgsc.bcm.edu	hg19	2	38978384	38978384	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	SRSF7	NM_001195446	exon1	c.G15T	p.G5G	GTACCGCCCGTAA	.	87.0	32.0	128.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
ANKZF1	55139	hgsc.bcm.edu	hg19	2	220099828	220099828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ANKZF1	NM_001042410	exon10	c.G1485T	p.W495C	GCTCTGGAATGCA	.	57.0	22.0	68.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB11	27107	hgsc.bcm.edu	hg19	3	101390912	101390912	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ZBTB11	NM_014415	exon2	c.G456T	p.S152S	ATCTTCCGATTCA	.	186.0	11.0	107.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
KY	339855	hgsc.bcm.edu	hg19	3	134323200	134323200	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	KY	NM_178554	exon11	c.G1207T	p.E403X	ACACCTCCAACTT	.	143.0	104.0	111.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
PPAT	5471	hgsc.bcm.edu	hg19	4	57272675	57272675	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PPAT	NM_002703	exon3	c.C388G	p.R130G	TTAATCGAGCAGC	.	118.0	5.0	88.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
HNRNPAB	3182	hgsc.bcm.edu	hg19	5	177632984	177632984	+	Silent	SNP	G	G	A	rs201431713	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HNRNPAB	NM_031266	exon3	c.G351A	p.L117L	TATCCTGTTCAAA	.	198.0	104.0	193.0	0.0	.	24	.	.	.	alt	G|0.999;C|0.001	.	PASS	Atlas-SNP
ICK	22858	hgsc.bcm.edu	hg19	6	52878690	52878690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ICK	NM_016513	exon10	c.C922G	p.L308V	TTTCCAGGATGCC	.	48.0	23.0	49.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
CCM2	83605	hgsc.bcm.edu	hg19	7	45112359	45112359	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CCM2	NM_001029835	exon7	c.C843T	p.T281T	GGAGACCTACGAG	.	174.0	41.0	93.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
TBRG4	9238	hgsc.bcm.edu	hg19	7	45145054	45145054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	TBRG4	NM_001261834	exon3	c.C754A	p.R252S	CCAGGCGGTTCAT	.	294.0	12.0	195.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
PTPN12	5782	hgsc.bcm.edu	hg19	7	77267951	77267951	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PTPN12	NM_002835	exon17	c.G2184T	p.A728A	TCCAGCGGGAGGT	.	328.0	14.0	178.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
ZKSCAN1	7586	hgsc.bcm.edu	hg19	7	99621201	99621201	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ZKSCAN1	NM_003439	exon2	c.A72G	p.V24V	TATCGTAATAGTG	.	191.0	48.0	121.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
CNTNAP2	26047	hgsc.bcm.edu	hg19	7	147336337	147336337	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CNTNAP2	NM_014141	exon13	c.C2037A	p.A679A	CAGTGCCGAGTAC	.	154.0	8.0	84.0	0.0	.	392	.	.	.	none	.	.	PASS	Atlas-SNP
C7orf29	113763	hgsc.bcm.edu	hg19	7	150027695	150027695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	C7orf29	NM_138434	exon1	c.C202A	p.R68S	TTCTACCGCGAGG	.	239.0	11.0	185.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
ASB10	136371	hgsc.bcm.edu	hg19	7	150878302	150878302	+	Silent	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ASB10	NM_001142459	exon3	c.G828C	p.L276L	GCTGCACAGCTGC	.	64.0	17.0	45.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
ST18	9705	hgsc.bcm.edu	hg19	8	53077711	53077711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ST18	NM_014682	exon12	c.C1279A	p.R427S	TGTTGCGGTTGCT	.	320.0	15.0	339.0	0.0	.	212	.	.	.	none	.	.	PASS	Atlas-SNP
WISP1	8840	hgsc.bcm.edu	hg19	8	134225321	134225321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	WISP1	NM_003882	exon2	c.C284T	p.P95L	GTGACCCCCACCG	.	82.0	41.0	141.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
SLC35D2	11046	hgsc.bcm.edu	hg19	9	99106263	99106263	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	SLC35D2,rectum,carcinoma,0,1	SLC35D2	NM_007001	exon8	c.G607T	p.G203X	GTACTCCGTATTT	.	225.0	9.0	187.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
COL27A1	85301	hgsc.bcm.edu	hg19	9	117047026	117047026	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	COL27A1,NS,carcinoma,0,1	COL27A1	NM_032888	exon41	c.C3956G	p.P1319R	TGGGACCCCTTGG	.	98.0	35.0	138.0	0.0	.	200	.	.	.	none	.	.	PASS	Atlas-SNP
AP3M1	26985	hgsc.bcm.edu	hg19	10	75898090	75898090	+	Silent	SNP	T	T	C	rs147488745	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	AP3M1	NM_207012	exon3	c.A48G	p.L16L	CTTCTCTAGAAAT	.	93.0	50.0	71.0	0.0	.	28	.	.	.	alt	T|1.000;G|0.000	.	PASS	Atlas-SNP
PDE6C	5146	hgsc.bcm.edu	hg19	10	95380726	95380726	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PDE6C	NM_006204	exon3	c.C712A	p.R238R	GAATCCCGAAGAA	.	408.0	17.0	465.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
OR8I2	120586	hgsc.bcm.edu	hg19	11	55861472	55861472	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	OR8I2,NS,carcinoma,0,1	OR8I2	NM_001003750	exon1	c.C689G	p.A230G	AGTCAGCAGCAGG	.	91.0	26.0	101.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117375681	117375681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	DSCAML1	NM_020693	exon10	c.G2320A	p.D774N	AGCCGTCCACCGA	.	67.0	27.0	102.0	0.0	.	286	.	.	.	none	.	.	PASS	Atlas-SNP
LIMA1	51474	hgsc.bcm.edu	hg19	12	50571511	50571511	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	LIMA1	NM_001113546	exon11	c.G1619C	p.G540A	GAACTTCCAAGTT	.	193.0	89.0	213.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
LAMP1	3916	hgsc.bcm.edu	hg19	13	113964011	113964011	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	LAMP1	NM_005561	exon3	c.C237T	p.S79S	CAGCTCCTGTGGA	.	117.0	64.0	116.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
BAZ1A	11177	hgsc.bcm.edu	hg19	14	35242930	35242930	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	BAZ1A	NM_013448	exon20	c.T3000C	p.V1000V	ATCTGTAACCTGT	.	46.0	26.0	43.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45636324	45636324	+	Silent	SNP	C	C	A	rs112784867	bycluster;byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	FANCM	NM_020937	exon11	c.C1960A	p.R654R	CCTTCTCGGAACT	.	127.0	10.0	118.0	0.0	.	225	.	.	.	alt	C|0.999;T|0.001	.	PASS	Atlas-SNP
ESR2	2100	hgsc.bcm.edu	hg19	14	64746749	64746749	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ESR2	NM_001214902	exon2	c.G485C	p.G162A	CAGACTCCATAGT	.	345.0	152.0	426.0	1.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
CYP46A1	10858	hgsc.bcm.edu	hg19	14	100165848	100165848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CYP46A1	NM_006668	exon4	c.C328A	p.R110S	ATGTACCGTGCGC	.	299.0	12.0	404.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
CCP110	9738	hgsc.bcm.edu	hg19	16	19548870	19548870	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CCP110	NM_001199022	exon4	c.T1879A	p.F627I	TCTGGCTTCGTTA	.	62.0	25.0	51.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24826534	24826534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	TNRC6A	NM_014494	exon19	c.G4739A	p.S1580N	ACAGCAGTACTTC	.	136.0	36.0	93.0	0.0	.	171	.	.	.	none	.	.	PASS	Atlas-SNP
CNOT1	23019	hgsc.bcm.edu	hg19	16	58585134	58585134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CNOT1	NM_206999	exon24	c.A3244G	p.T1082A	GATCTGTGGCCAC	.	464.0	292.0	226.0	0.0	.	359	.	.	.	none	.	.	PASS	Atlas-SNP
LASP1	3927	hgsc.bcm.edu	hg19	17	37074921	37074921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	LASP1	NM_006148	exon7	c.G676T	p.G226W	CAGGACGGGGACA	.	205.0	9.0	182.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
MED24	9862	hgsc.bcm.edu	hg19	17	38182477	38182477	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	MED24	NM_014815	exon19	c.G1917A	p.S639S	CTGCAGCGACTTC	.	200.0	45.0	203.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
STAT5A	6776	hgsc.bcm.edu	hg19	17	40459443	40459443	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	STAT5A	NM_003152	exon15	c.C1704A	p.Y568X	GAACTACACCTTC	.	46.0	7.0	40.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
RND2	8153	hgsc.bcm.edu	hg19	17	41180503	41180503	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	RND2	NM_005440	exon5	c.C490A	p.R164R	TCCTCCCGGTCCT	.	170.0	12.0	136.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
ITGB3	3690	hgsc.bcm.edu	hg19	17	45369560	45369560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ITGB3	NM_000212	exon10	c.C1316T	p.S439F	AGAAGTCCTTTAC	.	104.0	67.0	108.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
HSF5	124535	hgsc.bcm.edu	hg19	17	56540550	56540550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HSF5	NM_001080439	exon4	c.G1135C	p.V379L	CATCAACTATCTG	.	227.0	69.0	144.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
METTL2A	339175	hgsc.bcm.edu	hg19	17	60501296	60501296	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	METTL2A	NM_181725	exon1	c.A33G	p.A11A	ACCTGCAGTCCTC	.	73.0	24.0	51.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
CYB561	1534	hgsc.bcm.edu	hg19	17	61511913	61511913	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CYB561	NM_001915	exon6	c.C606T	p.N202N	CAGCACGTTGGCC	.	50.0	33.0	44.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA5	23461	hgsc.bcm.edu	hg19	17	67303077	67303077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ABCA5	NM_018672	exon5	c.C577T	p.L193F	TCCAAAGAGAAAC	.	113.0	39.0	63.0	0.0	.	162	.	.	.	none	.	.	PASS	Atlas-SNP
RIN2	54453	hgsc.bcm.edu	hg19	20	19955386	19955386	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	RIN2	NM_001242581	exon8	c.C864T	p.S288S	TGCCTCCCTGCGT	.	68.0	33.0	105.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1211L	343990	hgsc.bcm.edu	hg19	2	99413866	99413867	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	.	NM_207362	exon8	c.2551_2552del	p.851_851del	.	.	102.0	42.0	181.0	0.0	.	.	.	0.411765	0	none	.	.	PASS	Atlas-INDEL
ARID4A	5926	hgsc.bcm.edu	hg19	14	58827698	58827698	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ARID4A	NM_002892	exon19	c.2017delT	p.S673fs	.	.	132.0	59.0	85.0	0.0	.	222	.	0.44697	0	none	.	.	PASS	Atlas-INDEL
KDM6A	7403	hgsc.bcm.edu	hg19	X	44920581	44920581	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	KDM6A	NM_021140	exon14	c.1341delC	p.D447fs	.	.	15.0	14.0	11.0	0.0	.	274	.	0.933333	0	none	.	.	PASS	Atlas-INDEL
EMD	2010	hgsc.bcm.edu	hg19	X	153609241	153609241	+	Splice_Site	DEL	G	G	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	EMD	NM_000117	exon6	c.450-2G>-	.	.	.	45.0	40.0	70.0	0.0	.	25	.	0.888889	0	none	.	.	PASS	Atlas-INDEL
PDK4	5166	hgsc.bcm.edu	hg19	7	95221864	95221872	+	In_Frame_Del	DEL	CCAATGTGG	CCAATGTGG	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	CCAATGTGG	CCAATGTGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PDK4	NM_002612	exon5	c.568_576del	p.190_192del	.	.	204.0	78.0	170.0	0.0	.	42	.	0.382353	0	none	.	.	PASS	Atlas-INDEL
SLC6A4	6532	hgsc.bcm.edu	hg19	17	28525539	28525565	+	Frame_Shift_Del	DEL	TAATAATACGCTATTGGGAAGAAAATA	TAATAATACGCTATTGGGAAGAAAATA	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	TAATAATACGCTATTGGGAAGAAAATA	TAATAATACGCTATTGGGAAGAAAATA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	SLC6A4	NM_001045	exon15	c.1819_1829del	p.607_610del	.	.	89.0	18.0	81.0	0.0	.	60	.	0.202247	0	none	.	.	PASS	Atlas-INDEL
