Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
AGRN	375790	hgsc.bcm.edu	hg19	1	957703	957703	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	AGRN	NM_198576	exon2	c.C324A	p.S108S	GGTGTCCACTGGG	.	216.0	38.0	160.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
OTUD3	23252	hgsc.bcm.edu	hg19	1	20233031	20233031	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	OTUD3	NM_015207	exon7	c.T942C	p.N314N	CTTAAATGAAGGC	.	138.0	23.0	136.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
KANK4	163782	hgsc.bcm.edu	hg19	1	62739262	62739262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	KANK4	NM_181712	exon3	c.G1514A	p.G505D	TCAGTGCCTGCTT	.	133.0	18.0	96.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
SYDE2	84144	hgsc.bcm.edu	hg19	1	85648463	85648463	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SYDE2	NM_032184	exon3	c.T1862A	p.L621H	TCACTAAGGTAAC	.	84.0	13.0	85.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
NTRK1	4914	hgsc.bcm.edu	hg19	1	156851384	156851384	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	NTRK1	NM_002529	exon17	c.C2341T	p.L781L	GCCCGGCTGCAAG	.	19.0	4.0	18.0	0.0	.	287	.	.	.	none	.	.	PASS	Atlas-SNP
ERMN	57471	hgsc.bcm.edu	hg19	2	158178038	158178038	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ERMN	NM_001009959	exon4	c.A639T	p.E213D	TCGAACTTCATCT	.	73.0	12.0	61.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
UBR3	130507	hgsc.bcm.edu	hg19	2	170762609	170762609	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	UBR3	NM_172070	exon10	c.T1714A	p.F572I	GCTGCCTTTGCTG	.	101.0	29.0	73.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
OBSL1	23363	hgsc.bcm.edu	hg19	2	220416332	220416332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	OBSL1	NM_015311	exon20	c.C5602A	p.H1868N	CGTCATGGATGAC	.	209.0	53.0	151.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
SNED1	25992	hgsc.bcm.edu	hg19	2	242026825	242026825	+	Silent	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SNED1	NM_001080437	exon30	c.A4140T	p.R1380R	CTACCGAGTTCAC	.	196.0	70.0	151.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
SRGAP3	9901	hgsc.bcm.edu	hg19	3	9100033	9100033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SRGAP3	NM_014850	exon7	c.C925A	p.L309M	AATCCAGGTTGTC	.	178.0	29.0	173.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D5	9779	hgsc.bcm.edu	hg19	3	17550057	17550057	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TBC1D5	NM_014744	exon3	c.T6C	p.Y2Y	GGAATGATACATT	.	109.0	32.0	106.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
STAG1	10274	hgsc.bcm.edu	hg19	3	136060303	136060303	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	STAG1	NM_005862	exon31	c.A3537T	p.R1179S	TCCAGTTCTCACT	.	115.0	31.0	77.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
VWA5B2	90113	hgsc.bcm.edu	hg19	3	183955086	183955086	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	VWA5B2	NM_138345	exon11	c.A1606T	p.T536S	CCCGACACTGTGG	.	140.0	22.0	93.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
UBE2K	3093	hgsc.bcm.edu	hg19	4	39757353	39757353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	UBE2K	NM_005339	exon4	c.A293G	p.D98G	TGAAAGATCAATG	.	57.0	8.0	43.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
OCIAD2	132299	hgsc.bcm.edu	hg19	4	48887522	48887522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	OCIAD2	NM_001014446	exon7	c.C444A	p.D148E	CTGAGAGTCTCCC	.	195.0	42.0	158.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
ADH1B	125	hgsc.bcm.edu	hg19	4	100231924	100231924	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ADH1B	NM_000668	exon8	c.A1101G	p.K367K	CTACCTTTTCCCA	.	90.0	13.0	100.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A3	6531	hgsc.bcm.edu	hg19	5	1394869	1394869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	SLC6A3,NS,carcinoma,0,1	SLC6A3	NM_001044	exon15	c.G1844A	p.R615H	CAGTGGCGGAGCT	.	83.0	5.0	66.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
MED10	84246	hgsc.bcm.edu	hg19	5	6378594	6378594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MED10	NM_032286	exon1	c.G3T	p.M1I	CTCCGCCATCGCC	.	47.0	10.0	29.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
MEGF10	84466	hgsc.bcm.edu	hg19	5	126790286	126790286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MEGF10	NM_032446	exon24	c.G3009T	p.M1003I	CTATATGGGAAAA	.	26.0	4.0	18.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
ADAM19	8728	hgsc.bcm.edu	hg19	5	156908922	156908922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ADAM19	NM_033274	exon22	c.G2580T	p.K860N	GAGTGCCTTCTGG	.	64.0	16.0	71.0	0.0	.	216	.	.	.	none	.	.	PASS	Atlas-SNP
UNC5CL	222643	hgsc.bcm.edu	hg19	6	41000635	41000635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	UNC5CL	NM_173561	exon4	c.T937C	p.Y313H	AGATGTACGTGAG	.	77.0	10.0	77.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
DEFB110	245913	hgsc.bcm.edu	hg19	6	49986835	49986835	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	DEFB110	NM_001037497	exon2	c.A59C	p.K20T	TTCTTTTTGGCTG	.	102.0	6.0	70.0	0.0	.	5	.	.	.	none	.	.	PASS	Atlas-SNP
SERINC1	57515	hgsc.bcm.edu	hg19	6	122766258	122766258	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SERINC1	NM_020755	exon10	c.G1293C	p.W431C	GCCAATCCAACTG	.	92.0	19.0	68.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
DUSP26	78986	hgsc.bcm.edu	hg19	8	33454873	33454873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	DUSP26	NM_024025	exon2	c.C161A	p.T54K	TTGCCTGTGTAGA	.	93.0	16.0	94.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
CA13	377677	hgsc.bcm.edu	hg19	8	86162972	86162972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CA13	NM_198584	exon2	c.C41T	p.P14L	AAGGTCCTATTCA	.	91.0	11.0	105.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	132002781	132002781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ADCY8	NM_001115	exon2	c.C968T	p.A323V	GCCTGGGCCACAA	.	91.0	8.0	70.0	0.0	.	291	.	.	.	none	.	.	PASS	Atlas-SNP
RMI1	80010	hgsc.bcm.edu	hg19	9	86617525	86617525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	RMI1	NM_024945	exon3	c.G1624T	p.D542Y	TATCTAGATGTAG	.	97.0	19.0	110.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
LPAR1	1902	hgsc.bcm.edu	hg19	9	113704022	113704022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	LPAR1,colon,carcinoma,0,1	LPAR1	NM_001401	exon3	c.C472T	p.R158W	TCATCCGTGTGTG	.	180.0	28.0	154.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	hg19	9	131362363	131362363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SPTAN1	NM_003127	exon27	c.A3548T	p.E1183V	AGGATGAAACTGA	.	94.0	9.0	108.0	0.0	.	266	.	.	.	none	.	.	PASS	Atlas-SNP
LCN10	414332	hgsc.bcm.edu	hg19	9	139633991	139633991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	LCN10	NM_001001712	exon6	c.A589G	p.T197A	GGATGGTGTGTGT	.	196.0	24.0	140.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	16941145	16941145	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CUBN	NM_001081	exon54	c.C8448G	p.I2816M	GGATCTGATTGTA	.	100.0	4.0	92.0	0.0	.	515	.	.	.	none	.	.	PASS	Atlas-SNP
NUDT13	25961	hgsc.bcm.edu	hg19	10	74879794	74879794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	NUDT13	NM_015901	exon3	c.G102T	p.K34N	ACTGAAGGAAGAT	.	43.0	15.0	51.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
LZTS2	84445	hgsc.bcm.edu	hg19	10	102763858	102763858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	LZTS2	NM_032429	exon3	c.G1003C	p.D335H	CTCCGAGACCGGG	.	156.0	33.0	122.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
TIAL1	7073	hgsc.bcm.edu	hg19	10	121338280	121338280	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TIAL1	NM_001033925	exon7	c.T565G	p.W189G	TGGCCCAATTGGT	.	183.0	39.0	173.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
WDR11	55717	hgsc.bcm.edu	hg19	10	122664157	122664157	+	Splice_Site	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	WDR11	NM_018117	exon25	c.3028-1G>A	.	TTACTAGACAGAC	.	98.0	15.0	93.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
C11orf40	143501	hgsc.bcm.edu	hg19	11	4592781	4592781	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	C11orf40	NM_144663	exon4	c.C526G	p.R176G	CAGTGCGGTCCAA	.	86.0	14.0	67.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6646473	6646473	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	DCHS1	NM_003737	exon19	c.G7102C	p.D2368H	TGACATCCTCCAC	.	136.0	20.0	97.0	0.0	.	277	.	.	.	none	.	.	PASS	Atlas-SNP
LRP4	4038	hgsc.bcm.edu	hg19	11	46898795	46898795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	LRP4	NM_002334	exon23	c.A3232G	p.I1078V	TGGTAATGTTGAT	.	176.0	25.0	183.0	0.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
AMOTL1	154810	hgsc.bcm.edu	hg19	11	94533391	94533391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	AMOTL1	NM_130847	exon3	c.G1035T	p.M345I	CGAGATGGTCAAG	.	127.0	22.0	121.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
TMBIM4	51643	hgsc.bcm.edu	hg19	12	66546147	66546147	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TMBIM4	NM_016056	exon3	c.A216G	p.L72L	CAAAATTAAGGCA	.	123.0	20.0	114.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF140	7699	hgsc.bcm.edu	hg19	12	133683062	133683062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ZNF140	NM_003440	exon5	c.T1199C	p.L400P	TTTCCCTCATTCT	.	47.0	7.0	21.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
KCTD12	115207	hgsc.bcm.edu	hg19	13	77460122	77460122	+	Silent	SNP	C	C	G	rs371800969		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	KCTD12	NM_138444	exon1	c.G162C	p.S54S	GGGCACCGACACC	.	6.0	4.0	2.0	0.0	.	11	.	.	.	weak	.	.	PASS	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20845648	20845648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TEP1	NM_007110	exon41	c.C5879A	p.S1960Y	CCCTGGGAACCTA	.	76.0	17.0	79.0	0.0	.	224	.	.	.	none	.	.	PASS	Atlas-SNP
CDH24	64403	hgsc.bcm.edu	hg19	14	23524349	23524349	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CDH24	NM_022478	exon3	c.A415T	p.K139X	GCACTTTGATGAT	.	138.0	23.0	118.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	hg19	14	24885037	24885037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	NYNRIN	NM_025081	exon9	c.G4082T	p.G1361V	CCTGCGGCCTGGA	.	85.0	27.0	66.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
ATXN3	4287	hgsc.bcm.edu	hg19	14	92549507	92549507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ATXN3	NM_004993	exon7	c.C571G	p.L191V	CAATAAGTTTTGG	.	47.0	7.0	42.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
TLE3	7090	hgsc.bcm.edu	hg19	15	70368460	70368460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TLE3	NM_001105192	exon5	c.A272T	p.Q91L	ATGATCTGTGCTA	.	57.0	7.0	56.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
UACA	55075	hgsc.bcm.edu	hg19	15	70961458	70961458	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	UACA	NM_018003	exon16	c.C1565G	p.A522G	TTAAGGGCAAGAA	.	84.0	4.0	92.0	0.0	.	235	.	.	.	none	.	.	PASS	Atlas-SNP
CYP11A1	1583	hgsc.bcm.edu	hg19	15	74640247	74640247	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CYP11A1	NM_000781	exon2	c.T419A	p.L140Q	TTCAACAGGACTC	.	102.0	15.0	120.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
E4F1	1877	hgsc.bcm.edu	hg19	16	2285002	2285002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	E4F1	NM_004424	exon12	c.G1935T	p.E645D	CATCGAGGTGGGT	.	108.0	5.0	98.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30734928	30734928	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SRCAP	NM_006662	exon25	c.T4183C	p.L1395L	GCCCCCTTGACCA	.	123.0	30.0	109.0	0.0	.	298	.	.	.	none	.	.	PASS	Atlas-SNP
SLC12A3	6559	hgsc.bcm.edu	hg19	16	56919183	56919183	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SLC12A3	NM_001126108	exon15	c.A1832C	p.N611T	AGGTAAATTGGGG	.	99.0	35.0	68.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0753	9851	hgsc.bcm.edu	hg19	17	6526336	6526336	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	KIAA0753	NM_014804	exon6	c.C970G	p.R324G	CCCCTCGGTCAGT	.	256.0	68.0	178.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
SHBG	6462	hgsc.bcm.edu	hg19	17	7534128	7534128	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SHBG	NM_001040	exon3	c.C334G	p.H112D	CACAATCACTGGG	.	202.0	59.0	143.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
SOCS7	30837	hgsc.bcm.edu	hg19	17	36508826	36508826	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SOCS7	NM_014598	exon1	c.C699A	p.T233T	TGGGACCGGCAAG	.	47.0	10.0	18.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	hg19	17	39240796	39240796	+	Missense_Mutation	SNP	G	G	C	rs199957151		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	KRTAP4-7	NM_033061	exon1	c.G338C	p.S113T	GCCCCAGCTGCTG	.	14.0	9.0	12.0	0.0	.	49	.	.	.	weak	.	.	PASS	Atlas-SNP
TOB1	10140	hgsc.bcm.edu	hg19	17	48940734	48940734	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TOB1	NM_005749	exon2	c.C645G	p.D215E	CAAGAGGTCATTC	.	230.0	64.0	135.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
TOMM40	10452	hgsc.bcm.edu	hg19	19	45397281	45397281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TOMM40	NM_001128917	exon5	c.G601A	p.A201T	TTCACAGCAGCCG	.	106.0	12.0	75.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
NKX2-2	4821	hgsc.bcm.edu	hg19	20	21492814	21492814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	NKX2-2	NM_002509	exon2	c.A569C	p.K190T	ATACCTTTCTCGG	.	48.0	5.0	29.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
SETD4	54093	hgsc.bcm.edu	hg19	21	37408418	37408418	+	Silent	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SETD4	NM_017438	exon11	c.C1320G	p.T440T	AAATCAGGTAAAA	.	65.0	13.0	78.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	hg19	21	47664760	47664760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MCM3AP	NM_003906	exon23	c.G4999A	p.G1667R	GGAACCCGAGCAC	.	138.0	32.0	152.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
PI4KA	5297	hgsc.bcm.edu	hg19	22	21119517	21119517	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	PI4KA	NM_058004	exon21	c.G2445A	p.W815X	TTCTGGCCAGAGT	.	145.0	28.0	145.0	0.0	.	313	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF4	50649	hgsc.bcm.edu	hg19	2	131801154	131801154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ARHGEF4	NM_032995	exon11	c.1596delG	p.K532fs	.	.	202.0	54.0	126.0	0.0	.	89	.	0.267327	0	none	.	.	PASS	Atlas-Indel,Pindel
CTNNA1	1495	hgsc.bcm.edu	hg19	5	138118896	138118897	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CTNNA1	NM_001903	exon3	c.135_136del	p.45_46del	.	.	104.0	18.0	72.0	0.0	.	114	.	0.173077	0	none	.	.	PASS	Atlas-Indel,Pindel
AEBP1	165	hgsc.bcm.edu	hg19	7	44150535	44150535	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	AEBP1	NM_001129	exon13	c.1508delA	p.K503fs	.	.	105.0	30.0	73.0	0.0	.	102	.	0.285714	0	none	.	.	PASS	Atlas-Indel,Pindel
FAT4	79633	hgsc.bcm.edu	hg19	4	126408614	126408614	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	FAT4_ENST00000394329,right_upper_lobe,carcinoma,0,2	FAT4	NM_024582	exon16	c.12930delG	p.G4310fs	.	.	65.0	15.0	54.0	0.0	.	1752	.	0.230769	0	none	.	.	PASS	Atlas-Indel,Pindel
TG	7038	hgsc.bcm.edu	hg19	8	133899726	133899727	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TG	NM_003235	exon9	c.2109_2110insTA	p.C703fs	.	.	497.0	91.0	416.0	0.0	.	416	.	0.183099	0	none	.	.	PASS	Atlas-Indel,Pindel
MLH3	27030	hgsc.bcm.edu	hg19	14	75516201	75516205	+	Frame_Shift_Del	DEL	TGAAC	TGAAC	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	TGAAC	TGAAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MLH3	NM_014381	exon2	c.155_159del	p.52_53del	.	.	172.0	22.0	157.0	0.0	.	200	.	0.127907	0	none	.	.	PASS	Atlas-Indel,Pindel
ZW10	9183	hgsc.bcm.edu	hg19	11	113619115	113619115	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ZW10	NM_004724	exon8	c.954delT	p.N318fs	.	.	67.0	10.0	62.0	0.0	.	49	.	0.149	.	none	.	.	PASS	Pindel
