Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PRAMEF12	390999	hgsc.bcm.edu	hg19	1	12835275	12835275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	PRAMEF12	NM_001080830	exon1	c.C265T	p.L89F	GCACTGCTTGCCC	.	83.0	25.0	74.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
RPE65	6121	hgsc.bcm.edu	hg19	1	68910320	68910320	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	RPE65	NM_000329	exon5	c.A389T	p.D130V	GCATTGTCAGTAA	.	126.0	28.0	134.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	hg19	1	214802436	214802436	+	Silent	SNP	T	T	C	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	CENPF	NM_016343	exon8	c.T1116C	p.S372S	TTTGAGTTGTCAG	.	340.0	14.0	301.0	0.0	.	321	.	.	.	none	.	.	PASS	Atlas-SNP
LBR	3930	hgsc.bcm.edu	hg19	1	225592163	225592163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	LBR	NM_194442	exon13	c.C1630T	p.R544C	GGTGGCGAACAAA	.	118.0	13.0	133.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
OTOF	9381	hgsc.bcm.edu	hg19	2	26781380	26781380	+	Silent	SNP	G	G	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	OTOF	NM_194248	exon1	c.C60T	p.I20I	TTTGGCGATCCGG	.	164.0	39.0	172.0	0.0	.	524	.	.	.	none	.	.	PASS	Atlas-SNP
OTOF	9381	hgsc.bcm.edu	hg19	2	26781388	26781388	+	Missense_Mutation	SNP	C	C	A	rs376856990	alternate_allele	TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	OTOF	NM_194248	exon1	c.G52T	p.D18Y	TCCGGTCGCCCCT	.	160.0	37.0	165.0	0.0	.	524	.	.	.	alt	.	.	PASS	Atlas-SNP
DCLK3	85443	hgsc.bcm.edu	hg19	3	36779671	36779671	+	Silent	SNP	C	C	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	DCLK3	NM_033403	exon2	c.G480A	p.G160G	ACTGGTCCCCAGA	.	160.0	27.0	142.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
SCN11A	11280	hgsc.bcm.edu	hg19	3	38908836	38908836	+	Silent	SNP	G	G	A	rs371852759		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	SCN11A	NM_014139	exon23	c.C3927T	p.D1309D	GAAGTTGTCAATG	.	86.0	21.0	92.0	0.0	.	296	.	.	.	weak	.	.	PASS	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	hg19	5	37185181	37185181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	C5orf42	NM_023073	exon25	c.G4190A	p.G1397E	TGGGGTCCTGGAA	.	193.0	47.0	191.0	0.0	.	422	.	.	.	none	.	.	PASS	Atlas-SNP
CCNO	10309	hgsc.bcm.edu	hg19	5	54528321	54528321	+	Silent	SNP	G	G	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	CCNO	NM_021147	exon2	c.C435T	p.R145R	GAATTGGCGGTGC	.	204.0	43.0	162.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
MAS1L	116511	hgsc.bcm.edu	hg19	6	29455103	29455103	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	MAS1L	NM_052967	exon1	c.G577C	p.V193L	TGCAGACAACATT	.	127.0	10.0	111.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
CASP8AP2	9994	hgsc.bcm.edu	hg19	6	90573481	90573481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	CASP8AP2	NM_001137667	exon7	c.A2053G	p.M685V	TCTCCTATGGAAA	.	110.0	25.0	86.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
COQ3	51805	hgsc.bcm.edu	hg19	6	99817502	99817502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	COQ3	NM_017421	exon7	c.G1084T	p.A362S	GCACAGCTGGATT	.	181.0	41.0	169.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	hg19	7	5414035	5414035	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	TNRC18	NM_001080495	exon10	c.G2880C	p.K960N	GCCAGCCTTGCCC	.	50.0	16.0	28.0	0.0	.	311	.	.	.	none	.	.	PASS	Atlas-SNP
VWC2	375567	hgsc.bcm.edu	hg19	7	49815638	49815638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	VWC2	NM_198570	exon2	c.G607C	p.D203H	CACGTCGACACGA	.	28.0	16.0	17.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
FAM83A	84985	hgsc.bcm.edu	hg19	8	124206353	124206353	+	Silent	SNP	C	C	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	FAM83A	NM_032899	exon3	c.C738T	p.I246I	CATCATCTCGGAC	.	64.0	15.0	59.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
HNRNPH3	3189	hgsc.bcm.edu	hg19	10	70098907	70098907	+	Silent	SNP	T	T	C	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	HNRNPH3	NM_012207	exon5	c.T447C	p.G149G	TGGAGGTTTTGAT	.	131.0	38.0	123.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
PLAC9	219348	hgsc.bcm.edu	hg19	10	81901918	81901918	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	PLAC9	NM_001012973	exon2	c.C145G	p.L49V	CGCCGTCTAGATG	.	44.0	10.0	28.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	hg19	10	108427453	108427453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	SORCS1	NM_001206572	exon17	c.G2297T	p.S766I	CCAGTACTATTGA	.	65.0	15.0	52.0	0.0	.	534	.	.	.	none	.	.	PASS	Atlas-SNP
CSTF3	1479	hgsc.bcm.edu	hg19	11	33163206	33163206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	CSTF3	NM_001033505	exon3	c.A232G	p.I78V	ATAAAATAGTAAC	.	147.0	9.0	119.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
GLYATL1	92292	hgsc.bcm.edu	hg19	11	58723454	58723454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	GLYATL1	NM_080661	exon7	c.A956G	p.E319G	CCTGTGAGTGGCA	.	108.0	23.0	67.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
MS4A8	83661	hgsc.bcm.edu	hg19	11	60470856	60470856	+	Silent	SNP	C	C	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	.	NM_031457	exon3	c.C225A	p.I75I	GGCCATCCAGATC	.	160.0	17.0	141.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM134	80194	hgsc.bcm.edu	hg19	11	67232160	67232160	+	Silent	SNP	G	G	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	TMEM134	NM_025124	exon7	c.C513T	p.H171H	GATCACGTGATAG	.	105.0	6.0	82.0	0.0	.	4	.	.	.	none	.	.	PASS	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26639109	26639109	+	Silent	SNP	G	G	C	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	ITPR2	NM_002223	exon41	c.C5739G	p.P1913P	AATTGCGGGACTC	.	577.0	32.0	437.0	0.0	.	270	.	.	.	none	.	.	PASS	Atlas-SNP
USP30	84749	hgsc.bcm.edu	hg19	12	109520853	109520853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	USP30	NM_032663	exon11	c.G1154A	p.G385E	GGCCGGGAGCCCC	.	96.0	7.0	59.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
FLT3	2322	hgsc.bcm.edu	hg19	13	28624244	28624244	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	FLT3	NM_004119	exon6	c.C730G	p.L244V	TGAACAGCCTGGT	.	137.0	35.0	113.0	0.0	.	15525	.	.	.	none	.	.	PASS	Atlas-SNP
G2E3	55632	hgsc.bcm.edu	hg19	14	31061654	31061654	+	Splice_Site	SNP	G	G	C	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	G2E3	NM_017769	exon5	c.362+1G>C	.	TTTTGCGTGAGTT	.	146.0	28.0	121.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
CEP128	145508	hgsc.bcm.edu	hg19	14	81297497	81297497	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	CEP128,NS,carcinoma,0,1	CEP128	NM_152446	exon12	c.C1199A	p.S400X	ACTTGTGATGCCA	.	215.0	43.0	188.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
FAM181A	90050	hgsc.bcm.edu	hg19	14	94395093	94395093	+	Silent	SNP	G	G	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	FAM181A	NM_138344	exon3	c.G648A	p.E216E	GCTGGAGGGGGGA	.	53.0	11.0	27.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF839	55778	hgsc.bcm.edu	hg19	14	102805492	102805492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	ZNF839	NM_018335	exon7	c.C1859A	p.T620N	ACGATACCACTGA	.	118.0	28.0	102.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
OR4M2	390538	hgsc.bcm.edu	hg19	15	22369316	22369316	+	Silent	SNP	C	C	G	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	OR4M2	NM_001004719	exon1	c.C741G	p.T247T	CATTACCATTGTG	.	399.0	57.0	336.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
CEP152	22995	hgsc.bcm.edu	hg19	15	49030644	49030644	+	Silent	SNP	C	C	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	CEP152,NS,carcinoma,0,1	CEP152	NM_001194998	exon27	c.G4935A	p.T1645T	CAAATACGTGGTT	.	215.0	40.0	200.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	hg19	15	50978726	50978726	+	Splice_Site	SNP	A	A	G	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	TRPM7	NM_017672	exon2	c.3+2T>C	.	TCCAGTACCATTC	.	46.0	10.0	44.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
UNKL	64718	hgsc.bcm.edu	hg19	16	1442978	1442978	+	Splice_Site	SNP	C	C	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	UNKL	NM_001193388	exon9	c.938-1G>A	.	GGCTCTCTGCAAG	.	57.0	10.0	55.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24801625	24801625	+	Silent	SNP	C	C	G	rs377201148	alternate_allele	TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	TNRC6A	NM_014494	exon6	c.C1662G	p.G554G	GCCTGGCGTAAAT	.	124.0	29.0	115.0	0.0	.	171	.	.	.	alt	.	.	PASS	Atlas-SNP
SMARCE1	6605	hgsc.bcm.edu	hg19	17	38793826	38793826	+	Splice_Site	SNP	T	T	C	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	SMARCE1	NM_003079	exon6	c.157-2A>G	.	GATGCCTACGAAA	.	118.0	49.0	75.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
GPS1	2873	hgsc.bcm.edu	hg19	17	80013100	80013100	+	Splice_Site	SNP	T	T	C	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	GPS1	NM_004127	exon6	c.760+2T>C	.	CGCAGGTGAGGGC	.	114.0	18.0	88.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC57	284001	hgsc.bcm.edu	hg19	17	80156212	80156212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	CCDC57	NM_198082	exon3	c.G494A	p.G165D	AGCTCACCGTCGA	.	172.0	32.0	130.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9016700	9016700	+	Silent	SNP	G	G	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	MUC16	NM_024690	exon28	c.C38037T	p.D12679D	CCCAAGGTCCACT	.	89.0	24.0	97.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9075870	9075870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	MUC16	NM_024690	exon3	c.C11576T	p.T3859I	TCTGTTGTAAGAG	.	167.0	43.0	157.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
GCDH	2639	hgsc.bcm.edu	hg19	19	13002330	13002330	+	Silent	SNP	G	G	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	GCDH	NM_013976	exon3	c.A121A	p.R41R	CAACTGGCTAAGT	.	68.0	13.0	55.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB32	27033	hgsc.bcm.edu	hg19	19	36206193	36206193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	ZBTB32	NM_014383	exon2	c.C665T	p.S222F	GGGGCTCTGAGGA	.	19.0	7.0	20.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
SRRM5	100170229	hgsc.bcm.edu	hg19	19	44118259	44118259	+	Silent	SNP	C	C	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	SRRM5	NM_001145641	exon1	c.C1986T	p.L662L	CAGTCTCAGTCAG	.	39.0	12.0	32.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
BAX	581	hgsc.bcm.edu	hg19	19	49459013	49459013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	BAX	NM_004324	exon3	c.G156T	p.Q52H	GCCTCAGGATGCG	.	116.0	37.0	97.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
TTYH1	57348	hgsc.bcm.edu	hg19	19	54946848	54946848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	TTYH1	NM_020659	exon11	c.G1252T	p.A418S	GCCTGGGCCCTCT	.	108.0	38.0	85.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
MMP24	10893	hgsc.bcm.edu	hg19	20	33862094	33862094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	MMP24	NM_006690	exon9	c.G1620T	p.K540N	CTACAAGGGCCGG	.	32.0	11.0	15.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
KREMEN1	83999	hgsc.bcm.edu	hg19	22	29533423	29533423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	KREMEN1	NM_001039570	exon6	c.G725C	p.C242S	GGGTCTGCTACTG	.	169.0	29.0	111.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
CABP7	164633	hgsc.bcm.edu	hg19	22	30123661	30123661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	CABP7	NM_182527	exon2	c.G120T	p.E40D	CCGAGAGGCCTTC	.	56.0	9.0	44.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM184B	25829	hgsc.bcm.edu	hg19	22	38621517	38621517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	TMEM184B	NM_001195071	exon7	c.T701C	p.F234S	GTGGCGAAGTAGA	.	52.0	8.0	33.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	hg19	X	3229194	3229194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	MXRA5	NM_015419	exon7	c.C7050A	p.N2350K	AGTCTTGTTCCGG	.	38.0	4.0	37.0	0.0	.	815	.	.	.	none	.	.	PASS	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765167	66765167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	AR	NM_000044	exon1	c.A179T	p.Q60L	AGCAGCAGCAGCA	.	48.0	6.0	34.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	hg19	X	123229293	123229293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	STAG2	NM_001042749	exon34	c.T3777A	p.D1259E	TATGGATGAATCA	.	134.0	24.0	142.0	0.0	.	309	.	.	.	none	.	.	PASS	Atlas-SNP
MAGEA4	4103	hgsc.bcm.edu	hg19	X	151092975	151092975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	MAGEA4	NM_001011548	exon3	c.C839T	p.A280V	CTCTGGCTGAAAC	.	85.0	46.0	67.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	6853	6853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	.	ENST00000361624	exon1	c.G950A	p.G317D	CCACCGGCGTCAA	.	41.0	12.0	24.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
COX3	5742	hgsc.bcm.edu	hg19	MT	9819	9819	+	Nonsense_Mutation	SNP	G	G	A	rs2854139	bycluster;byfrequency;alternate_allele	TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	.	ENST00000362079	exon1	c.G613A	p.G205X	TTCCACGGACTTC	.	37.0	6.0	25.0	0.0	.	.	.	.	.	alt	C|0.931;T|0.069	.	PASS	Atlas-SNP
KRTAP5-7	440050	hgsc.bcm.edu	hg19	11	71238734	71238760	+	In_Frame_Del	DEL	TGCTGCTGTTCCTCAGGCTGTGGGTCA	TGCTGCTGTTCCTCAGGCTGTGGGTCA	-	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	TGCTGCTGTTCCTCAGGCTGTGGGTCA	TGCTGCTGTTCCTCAGGCTGTGGGTCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	KRTAP5-7	NM_001012503	exon1	c.387_413del	p.129_138del	.	.	117.0	12.0	89.0	0.0	.	23	.	0.102564	0	none	.	.	PASS	Atlas-INDEL
EPS15L1	58513	hgsc.bcm.edu	hg19	19	16545212	16545214	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	EPS15L1	NM_021235	exon7	c.461_463del	p.154_155del	.	.	61.0	11.0	83.0	0.0	.	81	.	0.180328	0	none	.	.	PASS	Atlas-Indel,Pindel
C11orf94	143678	hgsc.bcm.edu	hg19	11	45928455	45928456	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	C11orf94	NM_001080446	exon2	c.140_141insC	p.L47fs	.	.	57.0	12.0	37.0	0.0	.	13	.	0.210526	0	none	.	.	PASS	Atlas-Indel,Pindel
AFG3L2	10939	hgsc.bcm.edu	hg19	18	12359961	12359965	+	Frame_Shift_Del	DEL	ATTTT	ATTTT	-	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	ATTTT	ATTTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	AFG3L2	NM_006796	exon7	c.714_718del	p.238_240del	.	.	123.0	14.0	100.0	0.0	.	60	.	0.113821	0	none	.	.	PASS	Atlas-Indel,Pindel
RPE65	6121	hgsc.bcm.edu	hg19	1	68910331	68910343	+	Frame_Shift_Del	DEL	TACTCCTCGAAAG	TACTCCTCGAAAG	-	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	TACTCCTCGAAAG	TACTCCTCGAAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	RPE65	NM_000329	exon5	c.367_379del	p.123_127del	.	.	116.0	24.0	128.0	0.0	.	87	.	0.206897	0	none	.	.	PASS	Atlas-Indel,Pindel
OR1E1	8387	hgsc.bcm.edu	hg19	17	3301172	3301172	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	OR1E1	NM_003553	exon1	c.534delC	p.F178fs	.	.	156.0	59.0	106.0	0.0	.	37	.	0.378205	0	none	.	.	PASS	Atlas-Indel,Pindel
SCN11A	11280	hgsc.bcm.edu	hg19	3	38908838	38908838	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	SCN11A	NM_014139	exon23	c.3926delA	p.D1309fs	.	.	87.0	21.0	94.0	0.0	.	296	.	0.241379	0	none	.	.	PASS	Atlas-INDEL
SCFD2	152579	hgsc.bcm.edu	hg19	4	54140020	54140020	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	SCFD2	NM_152540	exon4	c.1285delC	p.L429fs	.	.	93.0	18.0	80.0	0.0	.	78	.	0.193548	0	none	.	.	PASS	Atlas-Indel,Pindel
MAP2K7	5609	hgsc.bcm.edu	hg19	19	7975668	7975757	+	Frame_Shift_Del	DEL	CTGGGCAAGATGACAGTGGCGGTGAGTGACCAGGCGGGGCTTGCACTGGGCAGGATGACAGAGGCGGTGAGTGACCAGGCGGGGCGTGCA	CTGGGCAAGATGACAGTGGCGGTGAGTGACCAGGCGGGGCTTGCACTGGGCAGGATGACAGAGGCGGTGAGTGACCAGGCGGGGCGTGCA	-	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	CTGGGCAAGATGACAGTGGCGGTGAGTGACCAGGCGGGGCTTGCACTGGGCAGGATGACAGAGGCGGTGAGTGACCAGGCGGGGCGTGCA	CTGGGCAAGATGACAGTGGCGGTGAGTGACCAGGCGGGGCTTGCACTGGGCAGGATGACAGAGGCGGTGAGTGACCAGGCGGGGCGTGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	MAP2K7	NM_145185	exon6	c.654_675del	p.218_225del	.	.	56.0	18.0	65.0	0.0	.	66	.	0.321	.	none	.	.	PASS	Pindel
SCN11A	11280	hgsc.bcm.edu	hg19	3	38908836	38908839	+	Frame_Shift_Del	DEL	GTCA	GTCA	-	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	GTCA	GTCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	SCN11A	NM_014139	exon23	c.3925_3928del	p.1309_1310del	.	.	88.0	18.0	93.0	0.0	.	296	.	0.205	.	none	.	.	PASS	Pindel
KRT72	140807	hgsc.bcm.edu	hg19	12	52981529	52981549	+	In_Frame_Del	DEL	GCCTGGTGCAGGGCGCCCTCC	GCCTGGTGCAGGGCGCCCTCC	-	novel		TCGA-IA-A83T-01A-11D-A34Z-10	TCGA-IA-A83T-11A-11D-A34Z-10	GCCTGGTGCAGGGCGCCCTCC	GCCTGGTGCAGGGCGCCCTCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	580ff01c-dd91-46ed-a426-7b2afea92207	cfd3629b-47b9-4934-86ab-9695c9f95668	.	KRT72	NM_001146225	exon7	c.1177_1197del	p.393_399del	.	.	128.0	12.0	103.0	0.0	.	70	.	0.094	.	none	.	.	PASS	Pindel
