Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
DDI2	84301	hgsc.bcm.edu	hg19	1	15956839	15956839	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DDI2	NM_032341	exon3	c.C288T	p.F96F	AGATTTCAGTAGT	.	133.0	66.0	168.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
MSH4	4438	hgsc.bcm.edu	hg19	1	76269502	76269502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	MSH4,NS,carcinoma,0,1	MSH4	NM_002440	exon2	c.G331A	p.D111N	GCACGAGATACTA	.	110.0	52.0	60.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC8C	84230	hgsc.bcm.edu	hg19	1	90180228	90180228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	LRRC8C	NM_032270	exon3	c.C2099A	p.P700H	TCCCCCCTGAAAT	.	77.0	29.0	43.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
RBM15	64783	hgsc.bcm.edu	hg19	1	110882978	110882978	+	Silent	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	RBM15	NM_022768	exon1	c.T951C	p.P317P	GCCCCCTCCACCT	.	112.0	53.0	214.0	1.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD35	148741	hgsc.bcm.edu	hg19	1	145561688	145561688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ANKRD35	NM_144698	exon10	c.A1376G	p.Q459R	CTGACCAGCTGCC	.	113.0	48.0	169.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
MAEL	84944	hgsc.bcm.edu	hg19	1	166974561	166974561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MAEL	NM_032858	exon8	c.C772A	p.L258I	AAATTTCTCAAGG	.	62.0	28.0	33.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
CNTN2	6900	hgsc.bcm.edu	hg19	1	205028742	205028742	+	Silent	SNP	C	C	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CNTN2	NM_005076	exon7	c.C729A	p.A243A	CAAGGCCCGGTTC	.	155.0	53.0	287.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
AHCTF1	25909	hgsc.bcm.edu	hg19	1	247070995	247070995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	AHCTF1	NM_015446	exon5	c.G649A	p.G217R	GGCGCCCTTGTCT	.	124.0	58.0	62.0	0.0	.	187	.	.	.	none	.	.	PASS	Atlas-SNP
OR2L8	391190	hgsc.bcm.edu	hg19	1	248112473	248112473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	OR2L8	NM_001001963	exon1	c.C314T	p.A105V	TCTTGGCATTAGG	.	393.0	140.0	233.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
LPIN1	23175	hgsc.bcm.edu	hg19	2	11960558	11960558	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	LPIN1	NM_001261428	exon21	c.G2686C	p.V896L	AAGCAAGTAGGAG	.	74.0	28.0	51.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
LPIN1	23175	hgsc.bcm.edu	hg19	2	11960560	11960560	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	LPIN1	NM_001261428	exon21	c.A2688G	p.V896V	GCAAGTAGGAGTG	.	75.0	29.0	50.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
KIF3C	3797	hgsc.bcm.edu	hg19	2	26178417	26178417	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	KIF3C	NM_002254	exon3	c.T1763G	p.L588R	TTCTTGAGTTTCT	.	155.0	62.0	299.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
CLIP4	79745	hgsc.bcm.edu	hg19	2	29379236	29379236	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	CLIP4,colon,carcinoma,0,1	CLIP4	NM_024692	exon10	c.A1182G	p.K394K	ATCAAAAAAAGAT	.	47.0	2.0	22.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHH2	130271	hgsc.bcm.edu	hg19	2	43953471	43953471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PLEKHH2	NM_172069	exon17	c.G2602T	p.D868Y	TCTTGTGATTCAG	.	74.0	27.0	42.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84777109	84777109	+	Silent	SNP	A	A	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DNAH6	NM_001370	exon9	c.A1413T	p.L471L	CAAGCTAAAACGA	.	66.0	25.0	34.0	0.0	.	194	.	.	.	none	.	.	PASS	Atlas-SNP
MCM6	4175	hgsc.bcm.edu	hg19	2	136620201	136620201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MCM6	NM_005915	exon8	c.G1196T	p.S399I	GCTGTACTTGGGT	.	180.0	78.0	142.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
MCM6	4175	hgsc.bcm.edu	hg19	2	136620202	136620202	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MCM6	NM_005915	exon8	c.A1195C	p.S399R	CTGTACTTGGGTC	.	179.0	78.0	142.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
ATG9A	79065	hgsc.bcm.edu	hg19	2	220090289	220090289	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ATG9A	NM_001077198	exon6	c.T218G	p.F73C	AAGAGGAACTGCC	.	59.0	22.0	63.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	hg19	2	228860230	228860230	+	Silent	SNP	G	G	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SPHKAP	NM_030623	exon8	c.C4629G	p.S1543S	CCTCATGGATCGC	.	283.0	107.0	298.0	1.0	.	750	.	.	.	none	.	.	PASS	Atlas-SNP
CAMK1	8536	hgsc.bcm.edu	hg19	3	9802445	9802445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	CAMK1,NS,carcinoma,0,1	CAMK1	NM_003656	exon8	c.G640A	p.G214S	GGTAACCGCAGAG	.	46.0	22.0	76.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
ARIH2OS	646450	hgsc.bcm.edu	hg19	3	48956091	48956091	+	Silent	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	.	NM_001123040	exon1	c.A492T	p.P164P	AGACGCTGGTAGG	.	58.0	34.0	100.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF3	50650	hgsc.bcm.edu	hg19	3	56789065	56789065	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ARHGEF3	NM_001128615	exon6	c.A415T	p.T139S	CGAAGGTCTCACT	.	184.0	87.0	267.0	1.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
RNF13	11342	hgsc.bcm.edu	hg19	3	149678575	149678575	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	RNF13	NM_007282	exon11	c.C830G	p.T277S	AAAAAACCTGTCC	.	69.0	24.0	61.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
GABRA2	2555	hgsc.bcm.edu	hg19	4	46312218	46312218	+	Silent	SNP	A	A	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	GABRA2	NM_000807	exon6	c.T531A	p.A177A	TGAATGAGCATCC	.	125.0	52.0	67.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
GALNTL6	442117	hgsc.bcm.edu	hg19	4	173269759	173269759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	GALNTL6	NM_001034845	exon5	c.C472T	p.R158W	CTCCTGCGGACCA	.	171.0	88.0	73.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
SLC9A3	6550	hgsc.bcm.edu	hg19	5	476140	476140	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SLC9A3	NM_004174	exon14	c.A2135T	p.E712V	CCTTTCTCCTTGA	.	24.0	9.0	77.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS16	170690	hgsc.bcm.edu	hg19	5	5235155	5235155	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ADAMTS16	NM_139056	exon13	c.G1879C	p.G627R	TGTGAGGGCTCCA	.	81.0	34.0	126.0	0.0	.	543	.	.	.	none	.	.	PASS	Atlas-SNP
IL7R	3575	hgsc.bcm.edu	hg19	5	35876145	35876145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	IL7R	NM_002185	exon8	c.G937T	p.D313Y	GTGGATGACATTC	.	87.0	37.0	62.0	0.0	.	200	.	.	.	none	.	.	PASS	Atlas-SNP
PPIC	5480	hgsc.bcm.edu	hg19	5	122359696	122359696	+	Silent	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PPIC	NM_000943	exon5	c.A513T	p.T171T	CACCACTGTCTGG	.	188.0	76.0	177.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHA8	56140	hgsc.bcm.edu	hg19	5	140223201	140223201	+	Silent	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PCDHA8	NM_031856	exon1	c.G2295A	p.P765P	GCCACCGAAGACG	.	40.0	32.0	64.0	0.0	.	366	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGA12	26025	hgsc.bcm.edu	hg19	5	140811805	140811805	+	Silent	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PCDHGA12	NM_032094	exon1	c.G1479A	p.E493E	GGCTGAGAACACC	.	87.0	36.0	161.0	0.0	.	271	.	.	.	none	.	.	PASS	Atlas-SNP
LARP1	23367	hgsc.bcm.edu	hg19	5	154183178	154183178	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	LARP1	NM_015315	exon13	c.T2081A	p.V694D	CCACTGTCCCAGA	.	64.0	29.0	98.0	0.0	.	187	.	.	.	none	.	.	PASS	Atlas-SNP
PANK3	79646	hgsc.bcm.edu	hg19	5	167995656	167995656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	PANK3,NS,carcinoma,0,2	PANK3	NM_024594	exon2	c.C376T	p.R126C	CTGTGCGAAAATC	.	102.0	36.0	71.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
DHX16	8449	hgsc.bcm.edu	hg19	6	30640454	30640454	+	Silent	SNP	G	G	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DHX16	NM_003587	exon1	c.C165A	p.L55L	CCCACTGAGATCC	.	66.0	24.0	174.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
DHX16	8449	hgsc.bcm.edu	hg19	6	30640464	30640464	+	Missense_Mutation	SNP	G	G	T	rs375439029	alternate_allele	TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DHX16	NM_003587	exon1	c.C155A	p.T52N	TCCAAGGTATCAG	.	70.0	23.0	177.0	0.0	.	119	.	.	.	alt	.	.	PASS	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90426453	90426453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MDN1	NM_014611	exon44	c.G6659A	p.G2220D	AATGTGCCATGGC	.	94.0	38.0	73.0	0.0	.	478	.	.	.	none	.	.	PASS	Atlas-SNP
SIM1	6492	hgsc.bcm.edu	hg19	6	100895187	100895187	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SIM1	NM_005068	exon8	c.T955A	p.S319T	TGGAGGAGCGACT	.	59.0	22.0	100.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
AHR	196	hgsc.bcm.edu	hg19	7	17362177	17362177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	AHR	NM_001621	exon3	c.A306T	p.R102S	CTGTAGAGCAGCA	.	102.0	47.0	24.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
PDE1C	5137	hgsc.bcm.edu	hg19	7	31877507	31877507	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PDE1C	NM_001191058	exon11	c.G1239A	p.K413K	AGCAGTCTTCATT	.	416.0	169.0	130.0	0.0	.	465	.	.	.	none	.	.	PASS	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82579067	82579067	+	Missense_Mutation	SNP	C	C	A	rs370030206		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PCLO	NM_014510	exon6	c.G10837T	p.A3613S	AAGGAGCCAGCTG	.	234.0	127.0	87.0	0.0	.	1506	.	.	.	weak	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116422117	116422117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	MET,NS,carcinoma,0,1	MET	NM_001127500	exon18	c.T3652A	p.F1218I	AAAAAGTTTGTCC	.	75.0	31.0	22.0	0.0	.	412	.	.	.	none	.	.	PASS	Atlas-SNP
CHRNB3	1142	hgsc.bcm.edu	hg19	8	42565553	42565553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CHRNB3	NM_000749	exon3	c.G225A	p.M75I	GCTGATGACAACC	.	37.0	21.0	44.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
RBM12B	389677	hgsc.bcm.edu	hg19	8	94747484	94747484	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	RBM12B	NM_203390	exon3	c.T1155C	p.H385H	TGAAACATGTCCG	.	236.0	96.0	133.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	hg19	8	100514063	100514063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	VPS13B	NM_152564	exon26	c.C4019T	p.P1340L	TTGCTCCAGATCC	.	140.0	54.0	111.0	0.0	.	811	.	.	.	none	.	.	PASS	Atlas-SNP
FAM208B	54906	hgsc.bcm.edu	hg19	10	5788364	5788364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	.	NM_017782	exon15	c.T2980C	p.S994P	CAGAGCTCTGTGT	.	113.0	55.0	80.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
C1QL3	389941	hgsc.bcm.edu	hg19	10	16556595	16556595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	C1QL3	NM_001010908	exon2	c.G700A	p.G234R	CTTTCCCGCCATC	.	118.0	47.0	101.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
API5	8539	hgsc.bcm.edu	hg19	11	43342441	43342441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	API5	NM_006595	exon3	c.T302C	p.I101T	CAGATATACTAAC	.	93.0	42.0	65.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
OR8I2	120586	hgsc.bcm.edu	hg19	11	55861616	55861616	+	Missense_Mutation	SNP	C	C	T	rs140206966	bycluster;byfrequency;alternate_allele	TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	OR8I2,NS,carcinoma,0,2	OR8I2	NM_001003750	exon1	c.C833T	p.T278M	TCTATACGATTGT	.	96.0	8.0	52.0	0.0	.	119	.	.	.	alt	C|0.999;A|0.001	.	PASS	Atlas-SNP
HNRNPUL2	221092	hgsc.bcm.edu	hg19	11	62488862	62488862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	HNRNPUL2	NM_001079559	exon9	c.A1516G	p.K506E	GGCTTTTGGGGTC	.	214.0	87.0	180.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
PCF11	51585	hgsc.bcm.edu	hg19	11	82877727	82877727	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PCF11	NM_015885	exon5	c.A1788G	p.R596R	CAAAAGATGGAAA	.	135.0	65.0	67.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
NCAM1	4684	hgsc.bcm.edu	hg19	11	113078684	113078684	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	NCAM1	NM_001242608	exon8	c.G876C	p.K292N	GAACAAGGCTGGC	.	20.0	6.0	27.0	0.0	.	372	.	.	.	none	.	.	PASS	Atlas-SNP
C3AR1	719	hgsc.bcm.edu	hg19	12	8211578	8211578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	C3AR1	NM_004054	exon2	c.C1204T	p.L402F	CAGTAAGCAATGA	.	67.0	8.0	69.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
ESPL1	9700	hgsc.bcm.edu	hg19	12	53687232	53687232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ESPL1	NM_012291	exon31	c.T6337C	p.Y2113H	ATAGCCTATGGCT	.	97.0	45.0	133.0	0.0	.	158	.	.	.	none	.	.	PASS	Atlas-SNP
ALDH2	217	hgsc.bcm.edu	hg19	12	112227694	112227694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ALDH2	NM_000690	exon5	c.T508C	p.Y170H	TTCAGCTACACAC	.	61.0	21.0	81.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
HNF1A	6927	hgsc.bcm.edu	hg19	12	121437158	121437158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	HNF1A	NM_000545	exon8	c.T1589C	p.L530P	CCAACCTGAGCGC	.	116.0	54.0	399.0	0.0	.	302	.	.	.	none	.	.	PASS	Atlas-SNP
BRCA2	675	hgsc.bcm.edu	hg19	13	32907353	32907353	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	BRCA2	NM_000059	exon10	c.A1738C	p.I580L	GGTTTAATATCCA	.	93.0	49.0	55.0	0.0	.	812	.	.	.	none	.	.	PASS	Atlas-SNP
ESD	2098	hgsc.bcm.edu	hg19	13	47354151	47354151	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ESD	NM_001984	exon8	c.T519C	p.A173A	AATTGGAGCAAAT	.	101.0	42.0	76.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
OR11G2	390439	hgsc.bcm.edu	hg19	14	20666034	20666034	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	OR11G2	NM_001005503	exon1	c.C540T	p.T180T	CTGTACCAATCTT	.	112.0	39.0	63.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
C14orf37	145407	hgsc.bcm.edu	hg19	14	58563683	58563683	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	C14orf37	NM_001001872	exon5	c.G1848C	p.E616D	TTCATCCTCATCT	.	55.0	27.0	31.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64596614	64596614	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SYNE2	NM_182914	exon75	c.T14134A	p.L4712I	TACAAATTAGAGG	.	59.0	29.0	54.0	0.0	.	577	.	.	.	none	.	.	PASS	Atlas-SNP
TTC8	123016	hgsc.bcm.edu	hg19	14	89307438	89307438	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	TTC8	NM_144596	exon5	c.T387A	p.S129R	GCAGAGTGGAAGG	.	127.0	52.0	114.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
CDC42BPB	9578	hgsc.bcm.edu	hg19	14	103438368	103438368	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CDC42BPB	NM_006035	exon13	c.A1772T	p.K591M	TTCTGCTTCTGGG	.	132.0	60.0	293.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
CEP170B	283638	hgsc.bcm.edu	hg19	14	105353612	105353612	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	.	NM_001112726	exon12	c.T3036G	p.H1012Q	GCAGCATCACCCA	.	35.0	14.0	74.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CATSPER2	117155	hgsc.bcm.edu	hg19	15	43928412	43928412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CATSPER2	NM_054020	exon8	c.T848C	p.L283P	TTCGGGAGGTCCC	.	73.0	28.0	52.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
NEO1	4756	hgsc.bcm.edu	hg19	15	73590713	73590713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	NEO1	NM_002499	exon27	c.C3926T	p.T1309I	CCAGCACTGACAC	.	70.0	36.0	88.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
IREB2	3658	hgsc.bcm.edu	hg19	15	78755356	78755356	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	IREB2	NM_004136	exon3	c.T199A	p.L67I	AACATTTTAGACT	.	183.0	75.0	107.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1199	57214	hgsc.bcm.edu	hg19	15	81166242	81166242	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	KIAA1199,NS,carcinoma,0,1	KIAA1199	NM_018689	exon2	c.G22C	p.D8H	AGGCAGGACTTCC	.	8.0	2.0	15.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30733505	30733505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SRCAP	NM_006662	exon22	c.G3604A	p.G1202R	AATGCAGGGGGAA	.	102.0	38.0	245.0	0.0	.	298	.	.	.	none	.	.	PASS	Atlas-SNP
CDH8	1006	hgsc.bcm.edu	hg19	16	61851550	61851550	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CDH8	NM_001796	exon7	c.G1110A	p.G370G	AAAGGGCCCCCTG	.	90.0	44.0	82.0	0.0	.	273	.	.	.	none	.	.	PASS	Atlas-SNP
CDT1	81620	hgsc.bcm.edu	hg19	16	88872437	88872437	+	Missense_Mutation	SNP	G	G	A	rs368718178		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CDT1	NM_030928	exon6	c.G841A	p.G281R	GCTGACGGAGCAG	.	12.0	5.0	36.0	0.0	.	30	.	.	.	weak	.	.	PASS	Atlas-SNP
MAP2K4	6416	hgsc.bcm.edu	hg19	17	12016635	12016635	+	Silent	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MAP2K4	NM_003010	exon7	c.T771C	p.S257S	GGACTCTATTGCC	.	159.0	104.0	81.0	0.0	.	176	.	.	.	none	.	.	PASS	Atlas-SNP
NAGLU	4669	hgsc.bcm.edu	hg19	17	40695935	40695935	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	NAGLU	NM_000263	exon6	c.C1911T	p.F637F	CGATTTCTACGAG	.	21.0	10.0	43.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
LSM12	124801	hgsc.bcm.edu	hg19	17	42117589	42117589	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	LSM12	NM_152344	exon4	c.G294A	p.K98K	GCTCAGCTTCTCC	.	67.0	42.0	60.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
AMH	268	hgsc.bcm.edu	hg19	19	2249551	2249551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	AMH	NM_000479	exon1	c.G220T	p.G74W	GTGGTGGGGGCTC	.	11.0	6.0	33.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
CLEC4M	10332	hgsc.bcm.edu	hg19	19	7832420	7832420	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	CLEC4M,NS,carcinoma,0,1	CLEC4M	NM_014257	exon6	c.A955T	p.T319S	CTGCAGACTTCCA	.	90.0	6.0	100.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
SNPH	9751	hgsc.bcm.edu	hg19	20	1286555	1286555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SNPH	NM_014723	exon6	c.C1342T	p.R448W	TCCCAGCGGCGCC	.	13.0	7.0	33.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
BRWD1	54014	hgsc.bcm.edu	hg19	21	40641908	40641908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	BRWD1	NM_018963	exon15	c.A1447T	p.I483F	ACATAATTCTGGA	.	48.0	26.0	20.0	0.0	.	325	.	.	.	none	.	.	PASS	Atlas-SNP
PDE9A	5152	hgsc.bcm.edu	hg19	21	44152003	44152003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PDE9A	NM_002606	exon5	c.A386G	p.E129G	AGGTAGAGCCCAG	.	50.0	26.0	121.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
SPECC1L	23384	hgsc.bcm.edu	hg19	22	24734414	24734414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SPECC1L	NM_001145468	exon9	c.C2621T	p.T874I	TGAAAACCCCTCC	.	216.0	89.0	242.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
GGT1	2678	hgsc.bcm.edu	hg19	22	25023938	25023938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	GGT1	NM_013430	exon13	c.T1328C	p.I443T	ATTTCATCCAGCC	.	99.0	48.0	225.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
CHKB	1120	hgsc.bcm.edu	hg19	22	51018475	51018475	+	Silent	SNP	A	A	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CHKB	NM_005198	exon8	c.T855G	p.V285V	ATCATAAACCCAC	.	134.0	54.0	125.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
DUSP6	1848	hgsc.bcm.edu	hg19	12	89743102	89743107	+	In_Frame_Del	DEL	CTGGAA	CTGGAA	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	CTGGAA	CTGGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DUSP6	NM_001946	exon3	c.1071_1076del	p.357_359del	.	.	129.0	41.0	146.0	0.0	.	30	.	0.317829	0	none	.	.	PASS	Atlas-INDEL
ITGB1	3688	hgsc.bcm.edu	hg19	10	33201013	33201013	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ITGB1	NM_133376	exon12	c.1510delA	p.T504fs	.	.	95.0	41.0	69.0	0.0	.	156	.	0.431579	0	none	.	.	PASS	Atlas-INDEL
MBOAT2	129642	hgsc.bcm.edu	hg19	2	9002791	9002791	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MBOAT2	NM_138799	exon11	c.1115delG	p.W372fs	.	.	86.0	39.0	61.0	0.0	.	36	.	0.453488	0	none	.	.	PASS	Atlas-INDEL
POTEF	728378	hgsc.bcm.edu	hg19	2	130872496	130872496	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	POTEF,NS,carcinoma,0,2	POTEF	NM_001099771	exon5	c.769delG	p.A257fs	.	.	114.0	18.0	91.0	0.0	.	140	.	0.157895	0	none	.	.	PASS	Atlas-INDEL
TPP1	1200	hgsc.bcm.edu	hg19	11	6638089	6638089	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	TPP1	NM_000391	exon7	c.690delC	p.F230fs	.	.	103.0	54.0	171.0	0.0	.	71	.	0.524272	0	none	.	.	PASS	Atlas-INDEL
SRCAP	10847	hgsc.bcm.edu	hg19	16	30733503	30733503	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SRCAP	NM_006662	exon22	c.3601delG	p.A1201fs	.	.	97.0	33.0	238.0	0.0	.	298	.	0.340206	0	none	.	.	PASS	Atlas-INDEL
REV3L	5980	hgsc.bcm.edu	hg19	6	111695488	111695488	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	REV3L	NM_002912	exon13	c.4071delT	p.N1357fs	.	.	134.0	52.0	55.0	0.0	.	386	.	0.38806	0	none	.	.	PASS	Atlas-INDEL
CD97	976	hgsc.bcm.edu	hg19	19	14518917	14518918	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CD97	NM_078481	exon20	c.2492_2493insA	p.S831fs	.	.	47.0	18.0	98.0	0.0	.	86	.	0.382979	0	none	.	.	PASS	Atlas-INDEL
RBKS	64080	hgsc.bcm.edu	hg19	2	28004505	28004506	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	RBKS	NM_022128	exon8	c.946_947insA	p.D316fs	.	.	134.0	42.0	108.0	0.0	.	23	.	0.313433	0	none	.	.	PASS	Atlas-INDEL
ATP8B2	57198	hgsc.bcm.edu	hg19	1	154314963	154314968	+	In_Frame_Del	DEL	GTTTGA	GTTTGA	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	GTTTGA	GTTTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ATP8B2	NM_020452	exon14	c.1349_1354del	p.450_452del	.	.	67.0	13.0	101.0	0.0	.	158	.	0.19403	0	none	.	.	PASS	Atlas-INDEL
TNF	7124	hgsc.bcm.edu	hg19	6	31545047	31545049	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	TNF	NM_000594	exon4	c.434_436del	p.145_146del	.	.	119.0	42.0	259.0	0.0	.	15	.	0.352941	0	none	.	.	PASS	Atlas-INDEL
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117431390	117431391	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CTTNBP2	NM_033427	exon4	c.1860_1861insG	p.T620fs	.	.	103.0	55.0	102.0	0.0	.	200	.	0.533981	0	none	.	.	PASS	Atlas-INDEL
POTEE	445582	hgsc.bcm.edu	hg19	2	131981572	131981572	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	.	NM_001083538	exon3	c.765delC	p.A255fs	.	.	131.0	29.0	69.0	0.0	.	.	.	0.221374	0	none	.	.	PASS	Atlas-INDEL
DAXX	1616	hgsc.bcm.edu	hg19	6	33287821	33287822	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DAXX	NM_001141970	exon5	c.1468_1469insT	p.E490_E491delinsX	.	.	22.0	10.0	30.0	0.0	.	111	.	0.454545	0	none	.	.	PASS	Atlas-INDEL
