Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
SFN	2810	hgsc.bcm.edu	hg19	1	27189915	27189915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	SFN	NM_006142	exon1	c.A212G	p.E71G	GCAACGAGGAGGG	.	116.0	46.0	106.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
PIAS3	10401	hgsc.bcm.edu	hg19	1	145578967	145578967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PIAS3	NM_006099	exon4	c.C545T	p.A182V	CAGGAGCCAAATG	.	131.0	48.0	126.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
TSACC	128229	hgsc.bcm.edu	hg19	1	156309583	156309583	+	Splice_Site	SNP	G	G	C	rs113369857	bycluster;alternate_allele	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	.	NM_144627	exon2	c.34+1G>C	.	GAAAAGGTGTGTG	.	59.0	17.0	68.0	0.0	.	.	.	.	.	alt	.	.	PASS	Atlas-SNP
CALCRL	10203	hgsc.bcm.edu	hg19	2	188245425	188245425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	CALCRL	NM_001271751	exon5	c.T274C	p.F92L	CCTGAAAGTAATC	.	67.0	34.0	41.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
WDR12	55759	hgsc.bcm.edu	hg19	2	203762106	203762106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	WDR12	NM_018256	exon5	c.G371A	p.R124Q	CAGATCCGAGAAG	.	107.0	26.0	120.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
COL4A3	1285	hgsc.bcm.edu	hg19	2	228145271	228145271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	COL4A3	NM_000091	exon30	c.G2339T	p.G780V	TCCCTGGAACTCC	.	198.0	66.0	175.0	0.0	.	293	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO36	130888	hgsc.bcm.edu	hg19	2	230875429	230875429	+	Silent	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FBXO36	NM_174899	exon4	c.A396G	p.K132K	TGATAAACTGTGG	.	64.0	17.0	46.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
TWF2	11344	hgsc.bcm.edu	hg19	3	52269098	52269098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TWF2	NM_007284	exon2	c.T50C	p.F17S	TTGGCAAAGAATT	.	103.0	33.0	80.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	hg19	3	124438147	124438147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	KALRN	NM_001024660	exon60	c.A8791G	p.T2931A	GCAGCCACATGCT	.	105.0	5.0	91.0	0.0	.	556	.	.	.	none	.	.	PASS	Atlas-SNP
FNDC3B	64778	hgsc.bcm.edu	hg19	3	172025192	172025192	+	Silent	SNP	C	C	G	rs145255541	alternate_allele	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FNDC3B	NM_001135095	exon10	c.C1101G	p.S367S	CTGCTCCGAGCCT	.	131.0	39.0	106.0	0.0	.	118	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
TBC1D14	57533	hgsc.bcm.edu	hg19	4	7026865	7026865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TBC1D14	NM_001113361	exon13	c.C1892A	p.T631N	TCCTGACCAAGAT	.	168.0	45.0	134.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
PDLIM5	10611	hgsc.bcm.edu	hg19	4	95496927	95496927	+	Missense_Mutation	SNP	C	C	G	rs200734812	bycluster;alternate_allele	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PDLIM5	NM_006457	exon5	c.C452G	p.T151S	CCTTCACCCCAGC	.	408.0	111.0	346.0	0.0	.	76	.	.	.	alt	C|0.999;T|0.001	.	PASS	Atlas-SNP
SH3RF1	57630	hgsc.bcm.edu	hg19	4	170028338	170028338	+	Silent	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	SH3RF1	NM_020870	exon11	c.T2158C	p.L720L	ACTTCAACAAACC	.	77.0	23.0	63.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
HINT1	3094	hgsc.bcm.edu	hg19	5	130500845	130500845	+	Silent	SNP	G	G	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	HINT1	NM_005340	exon1	c.C54A	p.I18I	CCCAAAGATCGTG	.	107.0	40.0	70.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D9B	23061	hgsc.bcm.edu	hg19	5	179326225	179326225	+	Silent	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TBC1D9B	NM_198868	exon3	c.G312A	p.E104E	ATCTTCCTCACTG	.	59.0	19.0	45.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
CDKAL1	54901	hgsc.bcm.edu	hg19	6	20846322	20846322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	CDKAL1	NM_017774	exon9	c.A655G	p.T219A	GCTTGTACCTACT	.	69.0	23.0	73.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
TJAP1	93643	hgsc.bcm.edu	hg19	6	43472653	43472653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TJAP1	NM_001146016	exon11	c.A734G	p.N245S	TGCTCAATTCAGC	.	182.0	20.0	161.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	hg19	6	169642014	169642014	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	THBS2	NM_003247	exon6	c.G734C	p.R245P	CCCAGGCGCAGCG	.	91.0	34.0	92.0	0.0	.	230	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF679	168417	hgsc.bcm.edu	hg19	7	63726979	63726979	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ZNF679	NM_153363	exon5	c.C968G	p.P323R	AGAAACCCTACAC	.	99.0	34.0	36.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103292216	103292216	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	RELN	NM_173054	exon15	c.C1784G	p.T595S	TGGTTGGTAGAAA	.	90.0	43.0	29.0	0.0	.	593	.	.	.	none	.	.	PASS	Atlas-SNP
JPH1	56704	hgsc.bcm.edu	hg19	8	75227665	75227665	+	Silent	SNP	G	G	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	JPH1	NM_020647	exon2	c.C570T	p.R190R	ACCGCCGCGGGTG	.	73.0	24.0	54.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	hg19	8	139180285	139180285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FAM135B	NM_015912	exon12	c.A1111G	p.T371A	TGTGCGTCTGTAT	.	167.0	7.0	114.0	0.0	.	423	.	.	.	none	.	.	PASS	Atlas-SNP
CYP11B1	1584	hgsc.bcm.edu	hg19	8	143956729	143956729	+	Splice_Site	SNP	C	C	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	CYP11B1	NM_001026213	exon8	c.1122-1G>C	.	TAGAGCCTGGAGG	.	40.0	16.0	35.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	hg19	8	144895667	144895667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	SCRIB	NM_015356	exon5	c.G476T	p.R159L	TTCTCCCGGAGCT	.	76.0	4.0	45.0	0.0	.	192	.	.	.	none	.	.	PASS	Atlas-SNP
MLLT3	4300	hgsc.bcm.edu	hg19	9	20414373	20414373	+	Silent	SNP	G	G	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	MLLT3,NS,carcinoma,0,4	MLLT3	NM_004529	exon5	c.C471T	p.S157S	GCTGCTGCTACTG	.	56.0	4.0	42.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
DGKH	160851	hgsc.bcm.edu	hg19	13	42742631	42742631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	DGKH	NM_001204504	exon11	c.G1174A	p.G392R	GGCGATGGAAGTG	.	69.0	19.0	82.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
DGKH	160851	hgsc.bcm.edu	hg19	13	42742632	42742632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	DGKH	NM_001204504	exon11	c.G1175T	p.G392V	GCGATGGAAGTGT	.	69.0	19.0	80.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
HAUS4	54930	hgsc.bcm.edu	hg19	14	23415759	23415759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	HAUS4	NM_001166269	exon10	c.A1067T	p.Q356L	AACTCCTGGAGGG	.	89.0	5.0	90.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	hg19	14	23549776	23549776	+	Silent	SNP	T	T	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ACIN1	NM_001164814	exon6	c.A942G	p.V314V	TGGTTTTACTCTA	.	182.0	54.0	160.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY4	196883	hgsc.bcm.edu	hg19	14	24793367	24793367	+	Silent	SNP	C	C	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ADCY4	NM_001198592	exon17	c.G1947T	p.L649L	TGCAGGCAGCCAG	.	80.0	6.0	66.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
JKAMP	51528	hgsc.bcm.edu	hg19	14	59965574	59965574	+	Silent	SNP	T	T	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	JKAMP	NM_016475	exon5	c.T588C	p.L196L	TGCACTTTACTTC	.	31.0	12.0	19.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
SBK1	388228	hgsc.bcm.edu	hg19	16	28330355	28330355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	SBK1	NM_001024401	exon3	c.C266T	p.T89I	GCAAAACCAAGCT	.	250.0	85.0	211.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
PSG2	5670	hgsc.bcm.edu	hg19	19	43585217	43585217	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PSG2	NM_031246	exon2	c.T246A	p.Y82X	TACTACATATGAT	.	513.0	141.0	456.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
TGM6	343641	hgsc.bcm.edu	hg19	20	2384361	2384361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TGM6	NM_198994	exon9	c.C1228T	p.R410W	GAGAGCCGGGAGC	.	126.0	6.0	109.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
COL6A2	1292	hgsc.bcm.edu	hg19	21	47542788	47542788	+	Splice_Site	SNP	G	G	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	COL6A2	NM_058175	exon21	c.1609-1G>A	.	GTCACAGGGAGGC	.	93.0	31.0	91.0	0.0	.	351	.	.	.	none	.	.	PASS	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	hg19	21	47809247	47809247	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PCNT	NM_006031	exon19	c.A3741T	p.E1247D	CCCAGAAAGTGTG	.	197.0	71.0	208.0	0.0	.	283	.	.	.	none	.	.	PASS	Atlas-SNP
OSBP2	23762	hgsc.bcm.edu	hg19	22	31137192	31137192	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	OSBP2	NM_030758	exon2	c.T689A	p.L230Q	TCAACCTGTCCAC	.	79.0	4.0	71.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	hg19	X	142718336	142718336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	SLITRK4	NM_001184750	exon2	c.G589T	p.G197W	GAACCCCGATATA	.	94.0	4.0	64.0	0.0	.	162	.	.	.	none	.	.	PASS	Atlas-SNP
GIN1	54826	hgsc.bcm.edu	hg19	5	102444326	102444335	+	Frame_Shift_Del	DEL	AGTGTAGTTG	AGTGTAGTTG	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	AGTGTAGTTG	AGTGTAGTTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	GIN1	NM_017676	exon2	c.78_87del	p.26_29del	.	.	71.0	16.0	67.0	0.0	.	53	.	0.225352	0	none	.	.	PASS	Atlas-INDEL
ING4	51147	hgsc.bcm.edu	hg19	12	6761549	6761549	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ING4	NM_001127582	exon6	c.537delC	p.G179fs	.	.	169.0	49.0	189.0	0.0	.	31	.	0.289941	0	none	.	.	PASS	Atlas-INDEL
ZDHHC14	79683	hgsc.bcm.edu	hg19	6	158093775	158093785	+	Frame_Shift_Del	DEL	TTCAGAGCACC	TTCAGAGCACC	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	TTCAGAGCACC	TTCAGAGCACC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ZDHHC14	NM_024630	exon9	c.1087_1097del	p.363_366del	.	.	71.0	11.0	63.0	0.0	.	39	.	0.15493	0	none	.	.	PASS	Atlas-INDEL
ACY1	95	hgsc.bcm.edu	hg19	3	52020519	52020519	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ACY1	NM_001198895	exon7	c.524delA	p.E175fs	.	.	85.0	37.0	72.0	0.0	.	35	.	0.435294	0	none	.	.	PASS	Atlas-INDEL
ZNF347	84671	hgsc.bcm.edu	hg19	19	53643573	53643575	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ZNF347	NM_001172675	exon5	c.2510_2512del	p.837_838del	.	.	170.0	46.0	193.0	0.0	.	87	.	0.270588	0	none	.	.	PASS	Atlas-INDEL
GPR3	2827	hgsc.bcm.edu	hg19	1	27720330	27720350	+	In_Frame_Del	DEL	GCCTGGCTCTCAGCTGGCTCA	GCCTGGCTCTCAGCTGGCTCA	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	GCCTGGCTCTCAGCTGGCTCA	GCCTGGCTCTCAGCTGGCTCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	GPR3	NM_005281	exon2	c.27_47del	p.9_16del	.	.	213.0	24.0	232.0	0.0	.	23	.	0.112676	0	none	.	.	PASS	Atlas-INDEL
FGD4	121512	hgsc.bcm.edu	hg19	12	32777967	32777968	+	In_Frame_Ins	INS	-	-	TTTTTT	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FGD4	NM_139241	exon13	c.1600_1601insTTTTTT	p.I534delinsIFF	.	.	186.0	19.0	194.0	0.0	.	86	.	0.102151	0	none	.	.	PASS	Atlas-INDEL
TTLL12	23170	hgsc.bcm.edu	hg19	22	43579135	43579149	+	In_Frame_Del	DEL	CACTTCCCCAGCGTC	CACTTCCCCAGCGTC	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	CACTTCCCCAGCGTC	CACTTCCCCAGCGTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TTLL12	NM_015140	exon2	c.185_199del	p.62_67del	.	.	195.0	16.0	192.0	0.0	.	50	.	0.0820513	0	none	.	.	PASS	Atlas-INDEL
KIAA1199	57214	hgsc.bcm.edu	hg19	15	81221510	81221511	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	KIAA1199	NM_018689	exon20	c.2606_2607del	p.869_869del	.	.	141.0	54.0	97.0	0.0	.	118	.	0.382979	0	none	.	.	PASS	Atlas-INDEL
