Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PRDM16	63976	hgsc.bcm.edu	hg19	1	3334451	3334451	+	Silent	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	PRDM16	NM_022114	exon11	c.C2751T	p.D917D	GGCGGACTCGGGC	.	311.0	80.0	178.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
TAS1R2	80834	hgsc.bcm.edu	hg19	1	19176018	19176018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	TAS1R2	NM_152232	exon4	c.C1284A	p.N428K	AGTGAAGTTGACC	.	121.0	30.0	79.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
ALDH4A1	8659	hgsc.bcm.edu	hg19	1	19201049	19201049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ALDH4A1	NM_003748	exon14	c.T1487C	p.V496A	CTCAGCACCTTTG	.	290.0	67.0	177.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
ARID1A	8289	hgsc.bcm.edu	hg19	1	27106580	27106580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ARID1A	NM_006015	exon20	c.T6191C	p.L2064P	TTACACTCGCCAA	.	238.0	58.0	194.0	0.0	.	842	.	.	.	none	.	.	PASS	Atlas-SNP
HIVEP3	59269	hgsc.bcm.edu	hg19	1	42047804	42047804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	HIVEP3,colon,carcinoma,0,1	HIVEP3	NM_024503	exon4	c.C2665T	p.R889C	GGCTGCGCTGGGG	.	299.0	70.0	159.0	0.0	.	235	.	.	.	none	.	.	PASS	Atlas-SNP
FNBP1L	54874	hgsc.bcm.edu	hg19	1	94009756	94009756	+	Silent	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	FNBP1L	NM_001164473	exon12	c.G1257A	p.Q419Q	ACTACAGAAAGAA	.	59.0	17.0	58.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152277075	152277075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	FLG	NM_002016	exon3	c.G10287T	p.E3429D	CTGACCCTCTTGG	.	1349.0	247.0	584.0	1.0	.	900	.	.	.	none	.	.	PASS	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	hg19	1	180047678	180047678	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CEP350	NM_014810	exon29	c.A5848T	p.S1950C	TTAGGCAGCCCTG	.	55.0	10.0	44.0	0.0	.	418	.	.	.	none	.	.	PASS	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237617770	237617770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	RYR2	NM_001035	exon15	c.G1372T	p.D458Y	CTGCAGGATCTCA	.	104.0	22.0	70.0	0.0	.	1273	.	.	.	none	.	.	PASS	Atlas-SNP
GEN1	348654	hgsc.bcm.edu	hg19	2	17962008	17962008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	GEN1	NM_182625	exon14	c.G1529A	p.G510E	ATTCGGGGATTTC	.	98.0	15.0	97.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21238283	21238283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	APOB	NM_000384	exon22	c.C3467T	p.A1156V	CCATAAGCTGTAG	.	201.0	35.0	96.0	0.0	.	761	.	.	.	none	.	.	PASS	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141607702	141607702	+	Silent	SNP	G	G	A	rs368565366		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	LRP1B,rectum,carcinoma,0,1	LRP1B	NM_018557	exon29	c.C4908T	p.N1636N	AGTTCCGTTAATA	.	123.0	25.0	123.0	0.0	.	1315	.	.	.	weak	.	.	PASS	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	hg19	3	151161388	151161388	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	IGSF10	NM_178822	exon5	c.A5347T	p.N1783Y	TTTGGTTTGCAAG	.	170.0	45.0	98.0	0.0	.	279	.	.	.	none	.	.	PASS	Atlas-SNP
GOLIM4	27333	hgsc.bcm.edu	hg19	3	167742778	167742778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	GOLIM4	NM_014498	exon13	c.A1729G	p.N577D	CTTCATTTTCATC	.	194.0	36.0	156.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	hg19	4	104117119	104117119	+	Silent	SNP	A	A	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CENPE	NM_001813	exon4	c.T315G	p.V105V	GGGTATAACTCCC	.	49.0	10.0	54.0	0.0	.	253	.	.	.	none	.	.	PASS	Atlas-SNP
IL6ST	3572	hgsc.bcm.edu	hg19	5	55247844	55247844	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	IL6ST	NM_002184	exon13	c.G1612C	p.E538Q	CCCACTCTAAGAC	.	64.0	6.0	70.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGA1	56114	hgsc.bcm.edu	hg19	5	140712677	140712677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	PCDHGA1	NM_031993	exon1	c.A2426G	p.N809S	AGGTAAACTTTTG	.	173.0	34.0	104.0	0.0	.	397	.	.	.	none	.	.	PASS	Atlas-SNP
CSF1R	1436	hgsc.bcm.edu	hg19	5	149433707	149433707	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CSF1R	NM_005211	exon22	c.T2844A	p.S948R	GTGCTCACTAGAG	.	67.0	14.0	28.0	0.0	.	250	.	.	.	none	.	.	PASS	Atlas-SNP
VARS	7407	hgsc.bcm.edu	hg19	6	31762754	31762754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	VARS	NM_006295	exon2	c.C241A	p.P81T	CTGCTGGCCACAG	.	86.0	15.0	59.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
AARS2	57505	hgsc.bcm.edu	hg19	6	44272835	44272835	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	AARS2	NM_020745	exon11	c.A1535T	p.D512V	GGGCTGTCGTCAG	.	370.0	34.0	179.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
SAMD3	154075	hgsc.bcm.edu	hg19	6	130505262	130505262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	SAMD3	NM_001017373	exon7	c.G640A	p.D214N	AGCCATCCTCATC	.	103.0	5.0	50.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
PUS7	54517	hgsc.bcm.edu	hg19	7	105099624	105099624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	PUS7	NM_019042	exon15	c.T1840C	p.F614L	AAGCAAAAACTGG	.	85.0	16.0	100.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1456	57604	hgsc.bcm.edu	hg19	8	12879058	12879058	+	Silent	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	KIAA1456	NM_020844	exon5	c.T870C	p.S290S	ACACTCTAGTTTA	.	110.0	26.0	64.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
ST8SIA6	338596	hgsc.bcm.edu	hg19	10	17495608	17495608	+	Silent	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ST8SIA6	NM_001004470	exon2	c.G150A	p.A50A	CCTCAGCGCTGCG	.	25.0	9.0	17.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129910454	129910454	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MKI67	NM_002417	exon9	c.A1912C	p.I638L	GTAAAATATCATG	.	175.0	39.0	152.0	0.0	.	363	.	.	.	none	.	.	PASS	Atlas-SNP
CADM1	23705	hgsc.bcm.edu	hg19	11	115080343	115080343	+	Silent	SNP	G	G	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	CADM1,NS,carcinoma,0,6	CADM1	NM_014333	exon8	c.C1029A	p.T343T	GGTGGTGGTTGTT	.	120.0	6.0	94.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
ANAPC5	51433	hgsc.bcm.edu	hg19	12	121766167	121766167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ANAPC5	NM_016237	exon10	c.A1256G	p.D419G	CTGATATCGATGA	.	120.0	17.0	76.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
ANAPC5	51433	hgsc.bcm.edu	hg19	12	121766168	121766168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ANAPC5	NM_016237	exon10	c.G1255T	p.D419Y	TGATATCGATGAG	.	121.0	18.0	76.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
MCF2L	23263	hgsc.bcm.edu	hg19	13	113741757	113741757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MCF2L	NM_001112732	exon22	c.A2582G	p.K861R	GCTACAAGCAGTC	.	56.0	12.0	22.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
HSPA2	3306	hgsc.bcm.edu	hg19	14	65009419	65009419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	HSPA2	NM_021979	exon1	c.C1852A	p.P618T	GGTGGTCCTGGCG	.	106.0	30.0	59.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
EIF2AK4	440275	hgsc.bcm.edu	hg19	15	40324962	40324962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	EIF2AK4	NM_001013703	exon37	c.A4733G	p.D1578G	AGGTGGATCTACC	.	78.0	16.0	87.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
TMC7	79905	hgsc.bcm.edu	hg19	16	19051691	19051691	+	Silent	SNP	C	C	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	TMC7	NM_024847	exon9	c.C1260A	p.I420I	TTTTATCACCCCA	.	184.0	37.0	157.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
NETO2	81831	hgsc.bcm.edu	hg19	16	47117430	47117430	+	Missense_Mutation	SNP	C	C	T	rs372424394		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	NETO2	NM_018092	exon9	c.G1280A	p.R427H	GAGGAGCGCCGCA	.	372.0	78.0	154.0	0.0	.	67	.	.	.	weak	.	.	PASS	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72821615	72821615	+	Silent	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	ZFHX3,NS,carcinoma,0,1	ZFHX3	NM_006885	exon10	c.C10560T	p.G3520G	GCCGCCGCCACCG	.	96.0	4.0	46.0	1.0	.	404	.	.	.	none	.	.	PASS	Atlas-SNP
EIF4A1	1973	hgsc.bcm.edu	hg19	17	7478578	7478578	+	Splice_Site	SNP	T	T	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	EIF4A1	NM_001204510	exon4	c.345+2T>G	.	AGCAGGTAAGAGT	.	190.0	41.0	134.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
MED24	9862	hgsc.bcm.edu	hg19	17	38187790	38187790	+	Splice_Site	SNP	C	C	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MED24	NM_001079518	exon11	c.1028+1G>C	.	CTCATACTTGCAG	.	356.0	55.0	156.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
NPEPPS	9520	hgsc.bcm.edu	hg19	17	45669357	45669357	+	Silent	SNP	A	A	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	NPEPPS	NM_006310	exon11	c.A1296T	p.I432I	TGAGATATTTGAT	.	133.0	17.0	76.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
CEP95	90799	hgsc.bcm.edu	hg19	17	62532827	62532827	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CEP95	NM_138363	exon18	c.G2178C	p.Q726H	CCACCAGGATGAA	.	155.0	47.0	62.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF419	79744	hgsc.bcm.edu	hg19	19	58005060	58005060	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ZNF419	NM_001098491	exon5	c.T1138G	p.F380V	GGGAAATTTTTTA	.	227.0	42.0	178.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
NDUFAF5	79133	hgsc.bcm.edu	hg19	20	13775537	13775537	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	.	NM_024120	exon5	c.A429T	p.E143D	TGAAGAATTCCTT	.	48.0	6.0	45.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
GART	2618	hgsc.bcm.edu	hg19	21	34904710	34904710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	GART	NM_001136005	exon5	c.G469A	p.G157R	TCACCCCTTTTCC	.	627.0	130.0	402.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
ADORA2A	135	hgsc.bcm.edu	hg19	22	24837246	24837246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ADORA2A	NM_000675	exon3	c.C1028T	p.P343L	ACCCGCCAGGAGT	.	71.0	17.0	41.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
RP2	6102	hgsc.bcm.edu	hg19	X	46713306	46713306	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	RP2	NM_006915	exon2	c.C498G	p.I166M	AAGTATCTTCAAC	.	229.0	34.0	193.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	hg19	X	144904238	144904238	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	SLITRK2	NM_001144005	exon5	c.C295T	p.Q99X	GGGTTACAGGAGA	.	243.0	48.0	155.0	0.0	.	221	.	.	.	none	.	.	PASS	Atlas-SNP
GRPR	2925	hgsc.bcm.edu	hg19	X	16168549	16168550	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	GRPR	NM_005314	exon2	c.535_536insC	p.S179fs	.	.	376.0	68.0	158.0	0.0	.	51	.	0.180851	0	none	.	.	PASS	Atlas-INDEL
ZNF184	7738	hgsc.bcm.edu	hg19	6	27420221	27420223	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TGG	TGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ZNF184	NM_007149	exon6	c.1116_1118del	p.372_373del	.	.	103.0	20.0	89.0	0.0	.	89	.	0.194175	0	none	.	.	PASS	Atlas-INDEL
TSG101	7251	hgsc.bcm.edu	hg19	11	18541141	18541142	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	TSG101	NM_006292	exon2	c.52_53del	p.18_18del	.	.	136.0	24.0	161.0	0.0	.	43	.	0.176471	0	none	.	.	PASS	Atlas-INDEL
