Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
CTTNBP2NL	55917	hgsc.bcm.edu	hg19	1	112999075	112999075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CTTNBP2NL	NM_018704	exon6	c.A961G	p.R321G	GCAGAAAGAACCC	.	118.0	20.0	145.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD35	148741	hgsc.bcm.edu	hg19	1	145561841	145561841	+	Missense_Mutation	SNP	G	G	A	rs201815402	by1000genomes;alternate_allele	TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ANKRD35	NM_144698	exon10	c.G1529A	p.R510Q	CTGCCCGGGGGGC	.	96.0	11.0	115.0	0.0	.	96	.	.	.	alt	G|1.000;T|0.000	.	PASS	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	hg19	1	153907297	153907297	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	DENND4B_ENST00000361217,NS,carcinoma,0,6	DENND4B	NM_014856	exon18	c.G2712A	p.Q904Q	CTGCTGCTGCTGC	.	38.0	12.0	39.0	0.0	.	210	.	.	.	none	.	.	PASS	Atlas-SNP
ILDR2	387597	hgsc.bcm.edu	hg19	1	166890003	166890003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ILDR2	NM_199351	exon9	c.G1825A	p.D609N	GCAGGTCGCGGCC	.	31.0	7.0	36.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
TPR	7175	hgsc.bcm.edu	hg19	1	186316562	186316562	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TPR	NM_003292	exon22	c.T2805C	p.D935D	AAGATCATCCACA	.	70.0	4.0	108.0	0.0	.	441	.	.	.	none	.	.	PASS	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	hg19	1	197072290	197072290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ASPM	NM_018136	exon18	c.T6091C	p.Y2031H	CACGATAAGCTGA	.	100.0	17.0	155.0	0.0	.	444	.	.	.	none	.	.	PASS	Atlas-SNP
IFT172	26160	hgsc.bcm.edu	hg19	2	27702392	27702392	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	IFT172	NM_015662	exon10	c.A989T	p.Y330F	CCCACATACGTCA	.	97.0	12.0	71.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
TCF7L1	83439	hgsc.bcm.edu	hg19	2	85361150	85361150	+	Silent	SNP	C	C	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TCF7L1	NM_031283	exon2	c.C261G	p.R87R	GAGGCGCCCGCAG	.	117.0	19.0	90.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
RNF103	7844	hgsc.bcm.edu	hg19	2	86832185	86832185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RNF103	NM_005667	exon4	c.T839C	p.I280T	ATGCCAATATCTG	.	133.0	8.0	133.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
MALL	7851	hgsc.bcm.edu	hg19	2	110873286	110873286	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MALL	NM_005434	exon1	c.C84T	p.F28F	GAAGGCGAAAGGG	.	178.0	22.0	133.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
SLC20A1	6574	hgsc.bcm.edu	hg19	2	113418053	113418053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SLC20A1	NM_005415	exon9	c.T1697C	p.L566P	TTCTACTCTATGG	.	176.0	29.0	211.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
INHBB	3625	hgsc.bcm.edu	hg19	2	121106693	121106693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	INHBB,NS,adenocarcinoma,0,2	INHBB	NM_002193	exon2	c.G467A	p.R156Q	CCTCCCGGGTCCG	.	96.0	5.0	133.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
EEF1B2	1933	hgsc.bcm.edu	hg19	2	207027278	207027278	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	EEF1B2	NM_021121	exon6	c.A463T	p.M155L	ACAGATATGGCGA	.	209.0	28.0	206.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
RAB17	64284	hgsc.bcm.edu	hg19	2	238494741	238494741	+	Silent	SNP	C	C	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RAB17	NM_022449	exon2	c.G57T	p.V19V	CTTGAACACACGG	.	120.0	18.0	116.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A6	6533	hgsc.bcm.edu	hg19	3	14508107	14508107	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SLC6A6	NM_003043	exon7	c.A816G	p.A272A	GGGCGCAGGCATC	.	64.0	9.0	60.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM115	11070	hgsc.bcm.edu	hg19	3	50396218	50396218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TMEM115	NM_007024	exon1	c.T277C	p.W93R	CCCCCCAGAGGGG	.	86.0	12.0	89.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
P2RY1	5028	hgsc.bcm.edu	hg19	3	152554007	152554007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	P2RY1	NM_002563	exon1	c.A436G	p.S146G	TGCATCAGTGCCC	.	90.0	5.0	82.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
FGFR3	2261	hgsc.bcm.edu	hg19	4	1807653	1807653	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	FGFR3	NM_001163213	exon13	c.T1828A	p.L610M	GAGTACTTGGCCT	.	55.0	17.0	57.0	0.0	.	3320	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A4	8671	hgsc.bcm.edu	hg19	4	72413388	72413388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SLC4A4	NM_001098484	exon20	c.T2645C	p.L882P	GAACCCTTGTGTT	.	82.0	7.0	109.0	0.0	.	269	.	.	.	none	.	.	PASS	Atlas-SNP
ISL1	3670	hgsc.bcm.edu	hg19	5	50680410	50680410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ISL1	NM_002202	exon2	c.A64G	p.N22D	TGCGGCAATCAGA	.	173.0	47.0	189.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
SEC24A	10802	hgsc.bcm.edu	hg19	5	134060676	134060676	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SEC24A	NM_021982	exon23	c.G3174C	p.E1058D	GGATGAGAGTCCA	.	404.0	43.0	409.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
HNRNPA0	10949	hgsc.bcm.edu	hg19	5	137088931	137088931	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	HNRNPA0,colon,carcinoma,0,1	HNRNPA0	NM_006805	exon1	c.C825T	p.G275G	TCCACCGCCGCCG	.	85.0	7.0	70.0	1.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
CREBRF	153222	hgsc.bcm.edu	hg19	5	172518246	172518246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	.	NM_153607	exon4	c.A1064T	p.E355V	GTCCTGAAGAAGA	.	169.0	32.0	190.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
HIVEP2	3097	hgsc.bcm.edu	hg19	6	143090738	143090738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	HIVEP2	NM_006734	exon5	c.C5138A	p.P1713H	GTTCCAGGCCTAT	.	93.0	17.0	133.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP
EIF2AK1	27102	hgsc.bcm.edu	hg19	7	6084205	6084205	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	EIF2AK1	NM_001134335	exon7	c.A718C	p.I240L	GCTGAATCACATG	.	41.0	6.0	31.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
CLCN1	1180	hgsc.bcm.edu	hg19	7	143049049	143049049	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CLCN1	NM_000083	exon23	c.G2958A	p.L986L	TGAACTGATCCTT	.	105.0	23.0	110.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
CTSL1	1514	hgsc.bcm.edu	hg19	9	90344596	90344596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CTSL1	NM_145918	exon6	c.C730T	p.P244S	GTGGGGCCCATTT	.	81.0	16.0	108.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
MASTL	84930	hgsc.bcm.edu	hg19	10	27456144	27456144	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MASTL	NM_032844	exon7	c.T925A	p.F309I	CACACCTTCATAT	.	86.0	4.0	96.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
IFIT5	24138	hgsc.bcm.edu	hg19	10	91177012	91177012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	IFIT5	NM_012420	exon2	c.A56G	p.H19R	AATGTCATTTTAC	.	125.0	16.0	148.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
USH1C	10083	hgsc.bcm.edu	hg19	11	17542471	17542471	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	USH1C	NM_005709	exon14	c.T1156G	p.L386V	TAGGCAAGAGTAG	.	87.0	9.0	134.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
OR5M3	219482	hgsc.bcm.edu	hg19	11	56237348	56237348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	OR5M3	NM_001004742	exon1	c.T626A	p.L209Q	ACAGTCAGGGAAT	.	173.0	20.0	206.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
OR5M3	219482	hgsc.bcm.edu	hg19	11	56237358	56237358	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	OR5M3	NM_001004742	exon1	c.A616T	p.T206S	AATATGTGAAGTT	.	172.0	20.0	205.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
SSRP1	6749	hgsc.bcm.edu	hg19	11	57100282	57100282	+	Silent	SNP	C	C	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SSRP1	NM_003146	exon6	c.G585T	p.T195T	ATCTCCCGTGGCC	.	72.0	15.0	98.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
FRMD8	83786	hgsc.bcm.edu	hg19	11	65168213	65168213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	FRMD8	NM_031904	exon9	c.C946T	p.R316C	GGCCTGCGCTTCC	.	82.0	13.0	76.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
MUS81	80198	hgsc.bcm.edu	hg19	11	65631192	65631192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MUS81	NM_025128	exon9	c.G961A	p.A321T	GACCCAGGTGAAG	.	110.0	21.0	132.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
INPPL1	3636	hgsc.bcm.edu	hg19	11	71948603	71948603	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	INPPL1	NM_001567	exon26	c.A3315G	p.P1105P	CTCACCAGCCAGC	.	72.0	17.0	93.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
C2CD3	26005	hgsc.bcm.edu	hg19	11	73796809	73796809	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	C2CD3	NM_015531	exon21	c.G3764C	p.C1255S	AAAGAACAGGCCA	.	132.0	19.0	140.0	0.0	.	288	.	.	.	none	.	.	PASS	Atlas-SNP
YAP1	10413	hgsc.bcm.edu	hg19	11	102100555	102100555	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	YAP1	NM_001130145	exon9	c.G1399T	p.G467X	ATAGAAGGAGAGG	.	94.0	15.0	128.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP32	9743	hgsc.bcm.edu	hg19	11	128933815	128933815	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ARHGAP32	NM_001142685	exon8	c.T825C	p.P275P	TTCGTCAGGGGCC	.	139.0	24.0	158.0	0.0	.	307	.	.	.	none	.	.	PASS	Atlas-SNP
CLSTN3	9746	hgsc.bcm.edu	hg19	12	7302198	7302198	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CLSTN3	NM_014718	exon14	c.T2154C	p.D718D	CCTGGATCCCGAG	.	67.0	21.0	110.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
MON2	23041	hgsc.bcm.edu	hg19	12	62954577	62954577	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MON2	NM_015026	exon26	c.T3716A	p.L1239Q	TGAATCTATGGTG	.	99.0	22.0	116.0	0.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
MRPS31	10240	hgsc.bcm.edu	hg19	13	41323388	41323388	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MRPS31	NM_005830	exon6	c.T844A	p.F282I	TAGCAAATTCCAC	.	88.0	8.0	122.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
COL4A2	1284	hgsc.bcm.edu	hg19	13	111117912	111117912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	COL4A2	NM_001846	exon25	c.T1937A	p.F646Y	CAGGCTTCCTGGG	.	124.0	14.0	158.0	0.0	.	178	.	.	.	none	.	.	PASS	Atlas-SNP
GTF2A1	2957	hgsc.bcm.edu	hg19	14	81659105	81659105	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	GTF2A1	NM_015859	exon7	c.A691T	p.N231Y	TCTTATTTCCTGT	.	77.0	9.0	84.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
SETD3	84193	hgsc.bcm.edu	hg19	14	99929881	99929881	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SETD3	NM_032233	exon3	c.G138A	p.E46E	TTCCCACTCTTTT	.	63.0	11.0	85.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
FAN1	22909	hgsc.bcm.edu	hg19	15	31197838	31197838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	FAN1	NM_001146095	exon2	c.T972G	p.H324Q	ATCTCATAGTTCT	.	86.0	16.0	97.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
SIN3A	25942	hgsc.bcm.edu	hg19	15	75705130	75705130	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SIN3A	NM_001145358	exon5	c.C730T	p.Q244X	GGGGCTGAGGAGC	.	89.0	12.0	131.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
RASGRF1	5923	hgsc.bcm.edu	hg19	15	79350728	79350728	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RASGRF1	NM_001145648	exon3	c.T479A	p.L160H	TGCCGAAGCTGCT	.	44.0	4.0	46.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	9858489	9858489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	GRIN2A	NM_000833	exon14	c.A2912G	p.Q971R	TCCTTCTGCCGGT	.	84.0	27.0	96.0	0.0	.	366	.	.	.	none	.	.	PASS	Atlas-SNP
ITGAX	3687	hgsc.bcm.edu	hg19	16	31373395	31373395	+	Splice_Site	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ITGAX	NM_000887	exon11	c.1087-1G>A	.	CTCCCAGGATGGC	.	74.0	10.0	94.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
ITGAX	3687	hgsc.bcm.edu	hg19	16	31383064	31383064	+	Missense_Mutation	SNP	G	G	A	rs368436373		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ITGAX	NM_000887	exon17	c.G2119A	p.G707R	GTCCTCGGGCTGA	.	54.0	5.0	59.0	0.0	.	198	.	.	.	weak	.	.	PASS	Atlas-SNP
COL1A1	1277	hgsc.bcm.edu	hg19	17	48277127	48277127	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	COL1A1	NM_000088	exon2	c.C285T	p.C95C	GTCGGGGCAGACG	.	59.0	6.0	34.0	0.0	.	158	.	.	.	none	.	.	PASS	Atlas-SNP
SRSF1	6426	hgsc.bcm.edu	hg19	17	56083837	56083837	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	SRSF1,NS,lymphoid_neoplasm,0,2	SRSF1	NM_006924	exon2	c.C246A	p.Y82X	CAGACGGTACCCA	.	206.0	20.0	223.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
NETO1	81832	hgsc.bcm.edu	hg19	18	70450990	70450990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	NETO1	NM_001201465	exon7	c.T791A	p.L264H	ACCCCAAGACCCG	.	88.0	7.0	74.0	0.0	.	178	.	.	.	none	.	.	PASS	Atlas-SNP
DOT1L	84444	hgsc.bcm.edu	hg19	19	2226194	2226194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	DOT1L	NM_032482	exon27	c.C3674T	p.A1225V	GCTTGGCGGGAAG	.	68.0	12.0	63.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38948847	38948847	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RYR1	NM_001042723	exon18	c.C2082G	p.Y694X	CCCCTACCCTGGG	.	46.0	8.0	55.0	0.0	.	708	.	.	.	none	.	.	PASS	Atlas-SNP
PSG5	5673	hgsc.bcm.edu	hg19	19	43679366	43679366	+	Splice_Site	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	PSG5	NM_002781	exon5	c.964+1G>A	.	CACTTACCAGAGA	.	114.0	12.0	153.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP8	126205	hgsc.bcm.edu	hg19	19	56487643	56487643	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	NLRP8	NM_176811	exon8	c.C2850T	p.N950N	GAAGAACCCTGAC	.	151.0	22.0	188.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP
ACTR5	79913	hgsc.bcm.edu	hg19	20	37383625	37383625	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ACTR5	NM_024855	exon4	c.T801C	p.D267D	TCCTGATTATTAT	.	256.0	56.0	245.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	hg19	20	47361658	47361658	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	PREX1	NM_020820	exon3	c.C318T	p.I106I	TTCCAGGATGTCT	.	79.0	22.0	130.0	0.0	.	441	.	.	.	none	.	.	PASS	Atlas-SNP
GSTT1	2952	hgsc.bcm.edu	hg19	22	24384206	24384206	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	GSTT1	NM_000853	exon1	c.T26A	p.L9Q	GACAGCAGGTCCA	.	84.0	22.0	86.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13095	13095	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	.	ENST00000361567	exon1	c.T759C	p.V253V	TATAGTTGTAGCA	.	11.0	6.0	5.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15614	15614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	.	ENST00000361789	exon1	c.G868A	p.G290S	CTAGGAGGCGTCC	.	15.0	8.0	9.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD44	91526	hgsc.bcm.edu	hg19	2	197878244	197878244	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ANKRD44	NM_001195144	exon18	c.1916delA	p.H639fs	.	.	134.0	31.0	141.0	0.0	.	281	.	0.231343	0	none	.	.	PASS	Atlas-Indel,Pindel
SESN1	27244	hgsc.bcm.edu	hg19	6	109309823	109309823	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SESN1	NM_014454	exon9	c.1493delC	p.T498fs	.	.	56.0	13.0	51.0	0.0	.	29	.	0.232143	0	none	.	.	PASS	Atlas-Indel,Pindel
TRPM3	80036	hgsc.bcm.edu	hg19	9	73151135	73151136	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TRPM3	NM_001007471	exon25	c.4858_4859insA	p.E1620fs	.	.	129.0	15.0	148.0	0.0	.	700	.	0.116279	0	none	.	.	PASS	Atlas-Indel,Pindel
SYVN1	84447	hgsc.bcm.edu	hg19	11	64900251	64900251	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SYVN1	NM_032431	exon5	c.380delT	p.M127fs	.	.	49.0	11.0	76.0	0.0	.	55	.	0.22449	0	none	.	.	PASS	Atlas-INDEL
