Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PIK3C2B	5287	hgsc.bcm.edu	hg19	1	204413511	204413511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PIK3C2B	NM_002646	exon18	c.T2720C	p.I907T	GAGCCAATCCACT	.	43.0	23.0	54.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
TLR5	7100	hgsc.bcm.edu	hg19	1	223286235	223286235	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TLR5	NM_003268	exon6	c.A139T	p.T47S	CAGTGGTGTTGAG	.	168.0	70.0	140.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179424419	179424419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TTN	NM_001267550	exon326	c.A86440T	p.N28814Y	TGGCATTTTCAAT	.	163.0	44.0	104.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
EDEM1	9695	hgsc.bcm.edu	hg19	3	5229984	5229984	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	EDEM1	NM_014674	exon1	c.C494G	p.P165R	GTGGGCCCGACCG	.	54.0	32.0	44.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
ACY1	95	hgsc.bcm.edu	hg19	3	52022828	52022828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ACY1	NM_001198895	exon14	c.C1048A	p.R350S	GACAACCGCTATA	.	138.0	65.0	85.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
PLXND1	23129	hgsc.bcm.edu	hg19	3	129281631	129281631	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PLXND1	NM_015103	exon27	c.T4824C	p.L1608L	CCCACCAAGGTCG	.	50.0	25.0	25.0	0.0	.	149	.	.	.	none	.	.	PASS	Atlas-SNP
MDGA1	266727	hgsc.bcm.edu	hg19	6	37622225	37622225	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	MDGA1	NM_153487	exon6	c.C807A	p.P269P	GGGGAGGGGATCA	.	79.0	34.0	115.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
USP45	85015	hgsc.bcm.edu	hg19	6	99894085	99894085	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	USP45	NM_001080481	exon14	c.A1563G	p.R521R	ACTGGATCTGAAC	.	60.0	23.0	69.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
CREB3	10488	hgsc.bcm.edu	hg19	9	35736272	35736272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CREB3	NM_006368	exon8	c.T745C	p.S249P	TACTCCTCTGACA	.	55.0	23.0	75.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
MAP3K8	1326	hgsc.bcm.edu	hg19	10	30748425	30748425	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	MAP3K8	NM_001244134	exon7	c.T1268G	p.I423S	AGAACATTGCTGG	.	42.0	17.0	48.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	hg19	11	6592937	6592937	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	DNHD1	NM_144666	exon43	c.G13983T	p.A4661A	ACATGCGGAGTGG	.	74.0	4.0	92.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
VSIG10	54621	hgsc.bcm.edu	hg19	12	118506351	118506351	+	Silent	SNP	C	C	T	rs373328738		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	VSIG10	NM_019086	exon8	c.G1398A	p.E466E	CTCCTCCTCTTCC	.	132.0	8.0	100.0	0.0	.	41	.	.	.	weak	.	.	PASS	Atlas-SNP
PRMT5	10419	hgsc.bcm.edu	hg19	14	23397402	23397402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PRMT5	NM_006109	exon3	c.T248C	p.V83A	TTTCCCACAATTA	.	85.0	33.0	59.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
PRMT7	54496	hgsc.bcm.edu	hg19	16	68386313	68386313	+	Splice_Site	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PRMT7	NM_001184824	exon13	c.1425+1G>A	.	TTCAGGGTAGGCC	.	22.0	9.0	12.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
BLMH	642	hgsc.bcm.edu	hg19	17	28614937	28614937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	BLMH	NM_000386	exon4	c.C350T	p.A117V	ACAAAAGCACTCA	.	76.0	17.0	75.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF677	342926	hgsc.bcm.edu	hg19	19	53740610	53740610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ZNF677	NM_182609	exon5	c.A1370G	p.K457R	TAAGGTTTTTCTC	.	80.0	23.0	65.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	hg19	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691	bycluster	TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ZNF814	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	115.0	8.0	87.0	0.0	.	93	.	.	.	weak	G|0.500;T|0.500	0.500	PASS	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	hg19	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532	bycluster	TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ZNF814	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	107.0	8.0	81.0	0.0	.	93	.	.	.	weak	C|0.500;T|0.500	0.500	PASS	Atlas-SNP
TRAPPC10	7109	hgsc.bcm.edu	hg19	21	45502876	45502876	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TRAPPC10	NM_003274	exon14	c.G1931A	p.W644X	CGGAGTGGCTTAC	.	67.0	32.0	121.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
F13A1	2162	hgsc.bcm.edu	hg19	6	6222265	6222266	+	Splice_Site	INS	-	-	CACA	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	F13A1	NM_000129	exon9	c.1112+1->TGTG	.	.	.	56.0	22.0	55.0	0.0	.	135	.	0.392857	0	none	.	.	PASS	Atlas-Indel,Pindel
ENPP1	5167	hgsc.bcm.edu	hg19	6	132211511	132211511	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ENPP1	NM_006208	exon25	c.2637delA	p.E879fs	.	.	167.0	46.0	165.0	0.0	.	108	.	0.275449	0	none	.	.	PASS	Atlas-INDEL
ARHGEF5	7984	hgsc.bcm.edu	hg19	7	144063479	144063479	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ARHGEF5	NM_005435	exon3	c.3185delC	p.P1062fs	.	.	900.0	80.0	514.0	0.0	.	73	.	0.0888889	0	none	.	.	PASS	Atlas-INDEL
ENPP1	5167	hgsc.bcm.edu	hg19	6	132211511	132211512	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ENPP1	NM_006208	exon25	c.2637_2638del	p.879_880del	.	.	167.0	33.0	167.0	0.0	.	108	.	0.198	.	none	.	.	PASS	Pindel
