Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
LRP1B	53353	hgsc.bcm.edu	hg19	2	141122239	141122239	+	Missense_Mutation	SNP	C	C	A	rs200747526	bycluster;by1000genomes;alternate_allele	TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	LRP1B	NM_018557	exon72	c.G11122T	p.D3708Y	ACATATCAGGGGC	.	258.0	27.0	233.0	0.0	.	1315	.	.	.	alt	C|1.000;G|0.000	.	PASS	Atlas-SNP
DHRS9	10170	hgsc.bcm.edu	hg19	2	169952139	169952139	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	DHRS9	NM_005771	exon8	c.T822G	p.S274R	AACAAGTCTCTTC	.	275.0	181.0	220.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210636827	210636827	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	UNC80	NM_182587	exon1	c.G31T	p.E11X	GGCCAGGAGCAGG	.	321.0	37.0	273.0	0.0	.	280	.	.	.	none	.	.	PASS	Atlas-SNP
TTLL4	9654	hgsc.bcm.edu	hg19	2	219617904	219617904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	TTLL4	NM_014640	exon18	c.C3254A	p.P1085Q	CTGCTCCAGTGGT	.	65.0	40.0	68.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
LYAR	55646	hgsc.bcm.edu	hg19	4	4270271	4270271	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	LYAR	NM_017816	exon9	c.A991T	p.K331X	TTAGCTTTTTGAT	.	62.0	9.0	89.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
SULT1B1	27284	hgsc.bcm.edu	hg19	4	70620844	70620844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	SULT1B1	NM_014465	exon2	c.T92C	p.I31T	TGTTCAATTTTTT	.	98.0	10.0	106.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
ATOH1	474	hgsc.bcm.edu	hg19	4	94750489	94750489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	ATOH1	NM_005172	exon1	c.G412T	p.D138Y	GTGGTAGACGAGC	.	101.0	48.0	114.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
LPL	4023	hgsc.bcm.edu	hg19	8	19813385	19813385	+	Missense_Mutation	SNP	G	G	A	rs118204062		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	LPL	NM_000237	exon6	c.G809A	p.R270H	ACGAGCGCTCCAT	.	86.0	25.0	83.0	0.0	.	78	.	.	.	weak	.	.	PASS	Atlas-SNP
ZFAND1	79752	hgsc.bcm.edu	hg19	8	82615255	82615255	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	ZFAND1	NM_001170797	exon7	c.T585A	p.F195L	AGCGGCAAAGTCT	.	135.0	49.0	160.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
PSD	5662	hgsc.bcm.edu	hg19	10	104173691	104173691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	PSD	NM_001270965	exon6	c.C1388A	p.P463H	TCAAGAGGGGCAA	.	103.0	38.0	147.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
PSD	5662	hgsc.bcm.edu	hg19	10	104173704	104173704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	PSD	NM_001270965	exon6	c.G1375A	p.A459T	GTGGGGCGGGAGC	.	99.0	40.0	134.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
C11orf95	65998	hgsc.bcm.edu	hg19	11	63533337	63533337	+	Silent	SNP	C	C	T	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	.	NM_001144936	exon2	c.G579A	p.E193E	TTCTTCCTCCTCC	.	25.0	4.0	19.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MAP1A	4130	hgsc.bcm.edu	hg19	15	43819753	43819753	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	MAP1A	NM_002373	exon4	c.T6082G	p.S2028A	CTCCAGTCTGACA	.	47.0	26.0	55.0	0.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
RTTN	25914	hgsc.bcm.edu	hg19	18	67816232	67816232	+	Silent	SNP	G	G	T	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	RTTN	NM_173630	exon17	c.C2214A	p.L738L	TAGAAGGAGAATG	.	71.0	12.0	117.0	0.0	.	184	.	.	.	none	.	.	PASS	Atlas-SNP
HUNK	30811	hgsc.bcm.edu	hg19	21	33371184	33371184	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	HUNK	NM_014586	exon11	c.T1832A	p.L611H	CGCCTCTCCATAC	.	41.0	34.0	101.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
BRD1	23774	hgsc.bcm.edu	hg19	22	50170697	50170697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	BRD1	NM_014577	exon9	c.G2713A	p.A905T	TCCTGGCCGCCTT	.	80.0	35.0	83.0	0.0	.	144	.	.	.	none	.	.	PASS	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	hg19	22	29885585	29885586	+	In_Frame_Ins	INS	-	-	AAGTCCCCTGAGAAGGCC	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.,1	NEFH	NM_021076	exon4	c.1956_1957insAAGTCCCCTGAGAAGGCC	p.A652delinsAKSPEKA	.	.	142.0	33.0	142.0	0.0	.	178	.	0.232394	0	none	.	.	PASS	Atlas-INDEL
AFF1	4299	hgsc.bcm.edu	hg19	4	88048262	88048262	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	AFF1	NM_001166693	exon15	c.2895delG	p.K965fs	.	.	61.0	25.0	69.0	0.0	.	102	.	0.409836	0	none	.	.	PASS	Atlas-Indel,Pindel
ARHGEF38	54848	hgsc.bcm.edu	hg19	4	106473951	106473951	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	ARHGEF38	NM_017700	exon1	c.28delG	p.E10fs	.	.	83.0	13.0	89.0	0.0	.	52	.	0.156627	0	none	.	.	PASS	Atlas-Indel,Pindel
TSC2	7249	hgsc.bcm.edu	hg19	16	2135239	2135240	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KV-A74V-01A-11D-A33Q-10	TCGA-KV-A74V-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	df25a569-f993-4bbe-9766-cdc2a7c40750	9a716ea4-aa7c-4d1a-b9ec-9fb71edb7024	.	TSC2	NM_000548	exon36	c.4578_4579insT	p.S1526fs	.	.	93.0	10.0	76.0	0.0	.	364	.	0.107527	0	none	.	.	PASS	Atlas-INDEL
