Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
UBR4	23352	hgsc.bcm.edu	hg19	1	19482811	19482811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	UBR4	NM_020765	exon42	c.C6026T	p.P2009L	GAACCAGGTAACC	.	418.0	155.0	474.0	1.0	.	415	.	.	.	none	.	.	PASS	Atlas-SNP
STK40	83931	hgsc.bcm.edu	hg19	1	36820910	36820910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	STK40	NM_032017	exon6	c.T467A	p.L156H	TTGATGAGGTCAG	.	187.0	66.0	215.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	hg19	1	109807154	109807154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CELSR2	NM_001408	exon11	c.G5368A	p.G1790S	GAGCAAGGCTGTA	.	126.0	50.0	135.0	0.0	.	228	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTSL4	54507	hgsc.bcm.edu	hg19	1	150531493	150531493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ADAMTSL4	NM_019032	exon16	c.G2615T	p.S872I	TTGGGAGTGGGGC	.	29.0	19.0	21.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
ELK4	2005	hgsc.bcm.edu	hg19	1	205588957	205588957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ELK4	NM_021795	exon3	c.G1217C	p.X406S	AACTTTCACATGA	.	75.0	27.0	58.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
OR13G1	441933	hgsc.bcm.edu	hg19	1	247836182	247836182	+	Silent	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	OR13G1,NS,carcinoma,-1,4	OR13G1	NM_001005487	exon1	c.G162T	p.T54T	CATGGGCGTATGC	.	157.0	52.0	129.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
GEN1	348654	hgsc.bcm.edu	hg19	2	17962535	17962535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GEN1	NM_182625	exon14	c.C2056G	p.Q686E	TATCCTCAGGATA	.	108.0	54.0	32.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
ITSN2	50618	hgsc.bcm.edu	hg19	2	24469667	24469667	+	Silent	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ITSN2	NM_147152	exon28	c.T3384C	p.P1128P	CATACCAGGATGA	.	71.0	35.0	28.0	0.0	.	224	.	.	.	none	.	.	PASS	Atlas-SNP
NRBP1	29959	hgsc.bcm.edu	hg19	2	27660178	27660178	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NRBP1	NM_013392	exon10	c.A854T	p.Q285L	TGCCACAGGAAGC	.	415.0	233.0	381.0	2.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
RFX8	731220	hgsc.bcm.edu	hg19	2	102014128	102014128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	RFX8,NS,carcinoma,0,1	RFX8	NM_001145664	exon12	c.C1304A	p.P435H	CCCATAGGAAGGC	.	176.0	50.0	138.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
NPHP1	4867	hgsc.bcm.edu	hg19	2	110922202	110922202	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NPHP1	NM_207181	exon8	c.T834A	p.N278K	CATCCTATTTCGC	.	130.0	38.0	88.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
CLASP1	23332	hgsc.bcm.edu	hg19	2	122161975	122161975	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CLASP1	NM_015282	exon26	c.C2705G	p.T902S	ATCCGAGTGAAGA	.	160.0	44.0	154.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	hg19	2	241725900	241725900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KIF1A	NM_001244008	exon6	c.G460A	p.V154I	CACGGACGCGCTC	.	238.0	22.0	203.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
FYCO1	79443	hgsc.bcm.edu	hg19	3	46009857	46009857	+	Missense_Mutation	SNP	C	C	A	rs372875711	alternate_allele	TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	FYCO1	NM_024513	exon8	c.G969T	p.E323D	TCCTAGCTCCAGG	.	47.0	11.0	79.0	0.0	.	115	.	.	.	alt	.	.	PASS	Atlas-SNP
RBM5	10181	hgsc.bcm.edu	hg19	3	50155814	50155814	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RBM5	NM_005778	exon25	c.T2373A	p.Y791X	CGCATATGGTTTG	.	150.0	63.0	172.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
WDR52	55779	hgsc.bcm.edu	hg19	3	113120585	113120585	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	WDR52	NM_001164496	exon10	c.T1172G	p.I391R	TCCCATATCTTGT	.	81.0	36.0	38.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
MYNN	55892	hgsc.bcm.edu	hg19	3	169496621	169496621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MYNN	NM_001185118	exon4	c.G332A	p.C111Y	CTAAATGCAAAAT	.	81.0	32.0	75.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
KNG1	3827	hgsc.bcm.edu	hg19	3	186435425	186435425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KNG1	NM_000893	exon1	c.G94T	p.D32Y	GACAAGGATTTAT	.	157.0	37.0	129.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D19	55296	hgsc.bcm.edu	hg19	4	26585819	26585819	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TBC1D19	NM_018317	exon1	c.T4C	p.L2L	GAAATGTTGCAGG	.	70.0	29.0	54.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
GRSF1	2926	hgsc.bcm.edu	hg19	4	71702003	71702003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GRSF1	NM_002092	exon2	c.T386C	p.L129P	GGTGGAAGGTCTT	.	154.0	46.0	141.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D9	23158	hgsc.bcm.edu	hg19	4	141600812	141600812	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TBC1D9	NM_015130	exon4	c.C546T	p.S182S	GTTAATGCTGAGG	.	82.0	30.0	61.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
AHRR	57491	hgsc.bcm.edu	hg19	5	434928	434928	+	Silent	SNP	G	G	A	rs368088592		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	AHRR	NM_020731	exon12	c.G2139A	p.S713S	AGCTTCGGGGTGC	.	126.0	6.0	121.0	0.0	.	67	.	.	.	weak	.	.	PASS	Atlas-SNP
EGFLAM	133584	hgsc.bcm.edu	hg19	5	38418272	38418272	+	Silent	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	EGFLAM	NM_001205301	exon12	c.C1599A	p.G533G	TCAAGGCTGTGTG	.	120.0	35.0	153.0	0.0	.	302	.	.	.	none	.	.	PASS	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89979468	89979468	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GPR98	NM_032119	exon28	c.T5730C	p.D1910D	TCCTGATGGTGAT	.	108.0	38.0	97.0	0.0	.	605	.	.	.	none	.	.	PASS	Atlas-SNP
STK10	6793	hgsc.bcm.edu	hg19	5	171471934	171471934	+	Silent	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	STK10	NM_005990	exon19	c.A2859C	p.P953P	CTTGCTTGGGGTG	.	98.0	5.0	95.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32038155	32038155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TNXB	NM_019105	exon14	c.G5027A	p.R1676H	CCAAGGCGGGGTG	.	82.0	27.0	49.0	0.0	.	553	.	.	.	none	.	.	PASS	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51768400	51768400	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	PKHD1	NM_170724	exon43	c.A6991C	p.I2331L	CCTCTATAACATT	.	118.0	41.0	97.0	0.0	.	927	.	.	.	none	.	.	PASS	Atlas-SNP
BBS9	27241	hgsc.bcm.edu	hg19	7	33380559	33380559	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	BBS9	NM_014451	exon11	c.G1249C	p.V417L	GTCGTGGTTTCTC	.	94.0	34.0	19.0	0.0	.	194	.	.	.	none	.	.	PASS	Atlas-SNP
GBAS	2631	hgsc.bcm.edu	hg19	7	56046042	56046042	+	Splice_Site	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GBAS	NM_001483	exon3	c.233-1G>C	.	GTTTCAGTTCACA	.	213.0	89.0	102.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
GOLGA2	2801	hgsc.bcm.edu	hg19	9	131021446	131021446	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GOLGA2	NM_004486	exon19	c.G2016A	p.Q672Q	CCTCACCTGGGTT	.	61.0	22.0	73.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
NRG3	10718	hgsc.bcm.edu	hg19	10	83635808	83635808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NRG3	NM_001165972	exon1	c.T712C	p.S238P	CACGATTCTACTC	.	150.0	62.0	125.0	0.0	.	301	.	.	.	none	.	.	PASS	Atlas-SNP
CYP2C8	1558	hgsc.bcm.edu	hg19	10	96818110	96818110	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	CYP2C8,NS,carcinoma,0,1	CYP2C8	NM_000770	exon5	c.C801G	p.F267L	GATCAGGAAGCAA	.	121.0	48.0	68.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
SORBS1	10580	hgsc.bcm.edu	hg19	10	97096528	97096528	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SORBS1	NM_001034954	exon28	c.A3389C	p.K1130T	TCTGCTTTCCTCT	.	116.0	50.0	93.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
MARK2	2011	hgsc.bcm.edu	hg19	11	63671476	63671476	+	Silent	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MARK2	NM_001039469	exon15	c.C1533G	p.S511S	AGGGTCCCGGGCC	.	38.0	13.0	24.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
DPF2	5977	hgsc.bcm.edu	hg19	11	65107956	65107956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DPF2	NM_006268	exon2	c.C133G	p.Q45E	GACTCACAGACCG	.	137.0	53.0	165.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92599961	92599961	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	FAT3	NM_001008781	exon21	c.T11713A	p.L3905M	GGAATCTTGGGCA	.	102.0	43.0	88.0	0.0	.	1822	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC15	80071	hgsc.bcm.edu	hg19	11	124847425	124847425	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CCDC15	NM_025004	exon6	c.G682C	p.G228R	ATAAGAGGAGAGT	.	57.0	19.0	24.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
STT3A	3703	hgsc.bcm.edu	hg19	11	125478106	125478106	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	STT3A	NM_152713	exon9	c.T883G	p.F295V	CAACAATTTGAAG	.	96.0	43.0	105.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
IQSEC3	440073	hgsc.bcm.edu	hg19	12	275007	275007	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	IQSEC3	NM_001170738	exon11	c.G2922A	p.L974L	GGACCTGAAGGAG	.	195.0	100.0	143.0	0.0	.	154	.	.	.	none	.	.	PASS	Atlas-SNP
SCAF11	9169	hgsc.bcm.edu	hg19	12	46342224	46342224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SCAF11	NM_004719	exon5	c.A394G	p.I132V	ACCTTATACAGCT	.	25.0	13.0	25.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
MTERFD3	80298	hgsc.bcm.edu	hg19	12	107371368	107371368	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MTERFD3	NM_001033050	exon3	c.T1125G	p.F375L	AGGGTTAAATAAT	.	124.0	68.0	54.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
MMP17	4326	hgsc.bcm.edu	hg19	12	132334421	132334421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MMP17	NM_016155	exon9	c.C1279T	p.P427S	AGCCTCCCGCCTG	.	270.0	85.0	217.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
STK24	8428	hgsc.bcm.edu	hg19	13	99127511	99127511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	STK24	NM_003576	exon4	c.C468A	p.D156E	TTTAATGTCTCTG	.	123.0	25.0	119.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
CIDEB	27141	hgsc.bcm.edu	hg19	14	24775587	24775587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CIDEB	NM_014430	exon5	c.C329G	p.P110R	CTTGTAGGGCTCC	.	150.0	51.0	139.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
ACTR10	55860	hgsc.bcm.edu	hg19	14	58680398	58680398	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ACTR10	NM_018477	exon6	c.G500C	p.G167A	CCCTAGGAGGAAA	.	27.0	16.0	34.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
SPTLC2	9517	hgsc.bcm.edu	hg19	14	78036838	78036838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SPTLC2	NM_004863	exon5	c.G645T	p.K215N	TTCATGCTTGTCC	.	75.0	34.0	64.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
C14orf159	80017	hgsc.bcm.edu	hg19	14	91681816	91681816	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	C14orf159	NM_001102368	exon13	c.C1632T	p.H544H	TGTCCACAGTCAG	.	95.0	39.0	117.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
FAM63B	54629	hgsc.bcm.edu	hg19	15	59139573	59139573	+	Silent	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	FAM63B	NM_001040450	exon7	c.A1446T	p.V482V	CAACGTAGATGGT	.	48.0	17.0	37.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
ACAN	176	hgsc.bcm.edu	hg19	15	89400337	89400337	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ACAN	NM_001135	exon12	c.T4521A	p.S1507R	TGTCAGTGAACTT	.	50.0	13.0	39.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
RBBP6	5930	hgsc.bcm.edu	hg19	16	24581079	24581079	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RBBP6	NM_006910	exon17	c.A3068T	p.N1023I	GGAAGAATGATGG	.	80.0	28.0	37.0	0.0	.	158	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF15	22899	hgsc.bcm.edu	hg19	17	8215790	8215790	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ARHGEF15	NM_025014	exon2	c.T433G	p.S145A	TCTGCCTCAGCTC	.	74.0	35.0	54.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO47	494188	hgsc.bcm.edu	hg19	17	37099134	37099134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	FBXO47	NM_001008777	exon9	c.T980C	p.L327P	ATTAGGAGACGTG	.	101.0	34.0	86.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
AMZ2	51321	hgsc.bcm.edu	hg19	17	66246341	66246341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	AMZ2	NM_001033574	exon2	c.C13T	p.R5W	ATAATACGGCACT	.	59.0	5.0	30.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
C17orf70	80233	hgsc.bcm.edu	hg19	17	79518169	79518169	+	Silent	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	C17orf70	NM_025161	exon3	c.T351C	p.P117P	GTCCACAGGGATC	.	559.0	133.0	446.0	1.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
DLGAP1	9229	hgsc.bcm.edu	hg19	18	3508641	3508641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DLGAP1	NM_001242761	exon11	c.C2498T	p.T833I	ACTGCGGTTCGGA	.	70.0	24.0	66.0	0.0	.	201	.	.	.	none	.	.	PASS	Atlas-SNP
DSG2	1829	hgsc.bcm.edu	hg19	18	29116286	29116286	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DSG2	NM_001943	exon11	c.T1545C	p.V515V	GAATGTTACTGCA	.	109.0	35.0	118.0	0.0	.	115	.	.	.	none	.	.	PASS	Atlas-SNP
RDH13	112724	hgsc.bcm.edu	hg19	19	55570627	55570627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RDH13	NM_001145971	exon2	c.G82T	p.G28W	AAGCCCCACCGGT	.	87.0	37.0	69.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
NCOA3	8202	hgsc.bcm.edu	hg19	20	46254225	46254225	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NCOA3	NM_181659	exon5	c.G357A	p.Q119Q	ACTTCAGGCAAGT	.	42.0	15.0	18.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
ADNP	23394	hgsc.bcm.edu	hg19	20	49509272	49509272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ADNP	NM_015339	exon5	c.T1979C	p.L660P	TAGGTGAGCTTTT	.	233.0	102.0	220.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
LIPI	149998	hgsc.bcm.edu	hg19	21	15561570	15561570	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	LIPI	NM_198996	exon2	c.C280T	p.Q94X	TCTTTTGTGTGTT	.	155.0	46.0	94.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
HLCS	3141	hgsc.bcm.edu	hg19	21	38309141	38309141	+	Missense_Mutation	SNP	C	C	G	rs148324626		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	HLCS	NM_000411	exon5	c.G604C	p.E202Q	TGTCCTCCAGCAG	.	154.0	54.0	184.0	0.0	.	64	.	.	.	weak	C|1.000;G|0.000	0.000	PASS	Atlas-SNP
TSPEAR	54084	hgsc.bcm.edu	hg19	21	45949793	45949793	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TSPEAR	NM_144991	exon5	c.C678T	p.T226T	CCTTGGGGTGGCG	.	28.0	12.0	23.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
IL17RA	23765	hgsc.bcm.edu	hg19	22	17566096	17566096	+	Silent	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	IL17RA	NM_014339	exon1	c.C115A	p.R39R	GACCACCGGGCGC	.	8.0	8.0	1.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
CSNK1E	1454	hgsc.bcm.edu	hg19	22	38690131	38690131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CSNK1E	NM_001894	exon9	c.G1202A	p.R401Q	GGGATCCGGGAGA	.	53.0	14.0	51.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
SHANK3	85358	hgsc.bcm.edu	hg19	22	51160300	51160300	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SHANK3	NM_033517	exon21	c.C3997G	p.P1333A	CCACCCCCTGCCC	.	36.0	10.0	34.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
WWC3	55841	hgsc.bcm.edu	hg19	X	10066562	10066562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	WWC3	NM_015691	exon8	c.A674C	p.K225T	ATGATAAAACAAG	.	38.0	27.0	25.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	hg19	5	176709581	176709584	+	In_Frame_Del	DEL	AAGT	AAGT	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NSD1	NM_022455	exon19	c.6007_6009del	p.2003_2003del	.	.	83.0	24.0	101.0	0.0	.	416	.	0.289157	0	none	.	.	PASS	Atlas-Indel,Pindel
C2CD2L	9854	hgsc.bcm.edu	hg19	11	118984691	118984704	+	In_Frame_Del	DEL	TTTCCAAGGTAACA	TTTCCAAGGTAACA	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TTTCCAAGGTAACA	TTTCCAAGGTAACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	C2CD2L	NM_014807	exon12	c.1618_1626del	p.540_542del	.	.	126.0	30.0	141.0	0.0	.	39	.	0.238095	0	none	.	.	PASS	Atlas-Indel,Pindel
MARK3	4140	hgsc.bcm.edu	hg19	14	103969341	103969341	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	MARK3,NS,carcinoma,0,1	MARK3	NM_001128918	exon18	c.2038delC	p.R680fs	.	.	203.0	69.0	303.0	0.0	.	86	.	0.339901	0	none	.	.	PASS	Atlas-Indel,Pindel
ZBTB2	57621	hgsc.bcm.edu	hg19	6	151686673	151686676	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TTTC	TTTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ZBTB2	NM_020861	exon3	c.1526_1529del	p.509_510del	.	.	127.0	39.0	137.0	0.0	.	30	.	0.307087	0	none	.	.	PASS	Atlas-Indel,Pindel
LAMTOR2	28956	hgsc.bcm.edu	hg19	1	156027791	156027791	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	LAMTOR2,colon,carcinoma,0,1	LAMTOR2	NM_014017	exon3	c.253delC	p.R85fs	.	.	315.0	118.0	311.0	0.0	.	13	.	0.374603	0	none	.	.	PASS	Atlas-Indel,Pindel
KCNK5	8645	hgsc.bcm.edu	hg19	6	39159405	39159412	+	Frame_Shift_Del	DEL	TTGTGGAC	TTGTGGAC	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TTGTGGAC	TTGTGGAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KCNK5	NM_003740	exon5	c.755_762del	p.252_254del	.	.	95.0	20.0	169.0	0.0	.	57	.	0.210526	0	none	.	.	PASS	Atlas-Indel,Pindel
GPR123	84435	hgsc.bcm.edu	hg19	10	134912186	134912187	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GPR123	NM_001083909	exon4	c.173_174del	p.58_58del	.	.	55.0	18.0	45.0	0.0	.	118	.	0.327273	0	none	.	.	PASS	Atlas-Indel,Pindel
RANBP2	5903	hgsc.bcm.edu	hg19	2	109380179	109380179	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RANBP2	NM_006267	exon20	c.3183delT	p.S1061fs	.	.	110.0	53.0	88.0	0.0	.	488	.	0.481818	0	none	.	.	PASS	Atlas-Indel,Pindel
TAF6	6878	hgsc.bcm.edu	hg19	7	99711723	99711723	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	TAF6,NS,carcinoma,0,1	TAF6	NM_001190415	exon2	c.222delG	p.Q74fs	.	.	421.0	177.0	276.0	0.0	.	55	.	0.420428	0	none	.	.	PASS	Atlas-Indel,Pindel
IFT122	55764	hgsc.bcm.edu	hg19	3	129214436	129214436	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	IFT122	NM_052985	exon19	c.2346delG	p.M782fs	.	.	251.0	114.0	294.0	0.0	.	117	.	0.454183	0	none	.	.	PASS	Atlas-Indel,Pindel
AKAP12	9590	hgsc.bcm.edu	hg19	6	151671659	151671659	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	AKAP12	NM_005100	exon4	c.2132delA	p.H711fs	.	.	142.0	50.0	155.0	0.0	.	170	.	0.352113	0	none	.	.	PASS	Atlas-Indel,Pindel
SLC32A1	140679	hgsc.bcm.edu	hg19	20	37353586	37353607	+	Frame_Shift_Del	DEL	GGGCGCTGAAGCGCCCGTCGAG	GGGCGCTGAAGCGCCCGTCGAG	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	GGGCGCTGAAGCGCCCGTCGAG	GGGCGCTGAAGCGCCCGTCGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SLC32A1	NM_080552	exon1	c.218_239del	p.73_80del	.	.	107.0	33.0	27.0	0.0	.	81	.	0.308411	0	none	.	.	PASS	Atlas-Indel,Pindel
GCM1	8521	hgsc.bcm.edu	hg19	6	52993368	52993369	+	In_Frame_Ins	INS	-	-	AAA	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GCM1	NM_003643	exon6	c.947_948insTTT	p.Y316delinsFY	.	.	112.0	22.0	140.0	0.0	.	47	.	0.196	.	none	.	.	PASS	Pindel
