Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
RBP7	116362	hgsc.bcm.edu	hg19	1	10068242	10068242	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RBP7	NM_052960	exon3	c.C264G	p.I88M	GGTTATCTGGGAC	.	148.0	15.0	194.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
PRDM2	7799	hgsc.bcm.edu	hg19	1	14108836	14108836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PRDM2	NM_015866	exon8	c.C4546T	p.R1516W	CGCAGACGGACAG	.	107.0	39.0	121.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
MST1L	11223	hgsc.bcm.edu	hg19	1	17087368	17087368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_001271733	exon3	c.G216T	p.W72C	GAACGCCCTGGAG	.	276.0	28.0	303.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
E2F2	1870	hgsc.bcm.edu	hg19	1	23848337	23848337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	E2F2	NM_004091	exon3	c.C570G	p.I190M	CCACTGGATGTTG	.	118.0	45.0	156.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
CD52	1043	hgsc.bcm.edu	hg19	1	26646661	26646661	+	Splice_Site	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CD52	NM_001803	exon2	c.55-1G>T	.	CCTACAGATACAA	.	42.0	6.0	52.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
COL8A2	1296	hgsc.bcm.edu	hg19	1	36564106	36564106	+	Silent	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	COL8A2	NM_005202	exon2	c.T1176C	p.I392I	ACCTCGAATGCCA	.	108.0	32.0	187.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
CDC20	991	hgsc.bcm.edu	hg19	1	43826814	43826814	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CDC20	NM_001255	exon9	c.G1101C	p.Q367H	CTGGCAGTCCAAT	.	82.0	32.0	118.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
KLF17	128209	hgsc.bcm.edu	hg19	1	44595144	44595144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	KLF17	NM_173484	exon2	c.G201T	p.M67I	AGAGATGCTGGGG	.	112.0	5.0	136.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
GPBP1L1	60313	hgsc.bcm.edu	hg19	1	46124748	46124748	+	Silent	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GPBP1L1	NM_021639	exon4	c.T12C	p.H4H	AAAATCATGCTGC	.	89.0	13.0	97.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
AGBL4	84871	hgsc.bcm.edu	hg19	1	48999847	48999847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AGBL4	NM_032785	exon14	c.T1510C	p.X504Q	GTCTTTAAAAAGG	.	156.0	20.0	179.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
FNBP1L	54874	hgsc.bcm.edu	hg19	1	93965136	93965136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	FNBP1L	NM_001164473	exon2	c.T136A	p.L46M	AAACAATTGAGGT	.	97.0	44.0	91.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
AQP10	89872	hgsc.bcm.edu	hg19	1	154296801	154296801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AQP10	NM_080429	exon6	c.G751T	p.V251L	CCTCTGGTGGGGG	.	33.0	16.0	41.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
CENPL	91687	hgsc.bcm.edu	hg19	1	173772300	173772300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CENPL	NM_001127181	exon6	c.C902A	p.A301E	TGTATTGCGAAAG	.	75.0	19.0	122.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
RFWD2	64326	hgsc.bcm.edu	hg19	1	175996826	175996826	+	Splice_Site	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RFWD2	NM_022457	exon16	c.1613-2A>G	.	CTTCACTAAGGGC	.	78.0	31.0	72.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
ETNK2	55224	hgsc.bcm.edu	hg19	1	204101322	204101322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ETNK2	NM_018208	exon8	c.T1151A	p.M384K	TTTGGCATCTCCA	.	101.0	34.0	165.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
DIEXF	27042	hgsc.bcm.edu	hg19	1	210006562	210006562	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	DIEXF	NM_014388	exon4	c.G421T	p.E141X	GGAAAAGAAGATG	.	51.0	17.0	59.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	hg19	1	214820696	214820696	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CENPF	NM_016343	exon13	c.A7783T	p.N2595Y	CTAGAGAATGAGC	.	55.0	24.0	66.0	0.0	.	321	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO11	80204	hgsc.bcm.edu	hg19	2	48040950	48040950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	FBXO11	NM_001190274	exon17	c.G2063A	p.G688E	AGAATTCCACCAT	.	44.0	5.0	61.0	0.0	.	127	.	.	.	none	.	.	PASS	Atlas-SNP
AAK1	22848	hgsc.bcm.edu	hg19	2	69757189	69757189	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AAK1	NM_014911	exon8	c.C822T	p.F274F	AATTGTGAAGTTT	.	125.0	44.0	170.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
RTKN	6242	hgsc.bcm.edu	hg19	2	74668862	74668862	+	Silent	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RTKN	NM_001015055	exon1	c.C82A	p.R28R	TGAGTCGGAAGCG	.	38.0	12.0	65.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
AUP1	550	hgsc.bcm.edu	hg19	2	74755401	74755401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AUP1	NM_181575	exon6	c.C645A	p.F215L	AGGGACGAAAAGT	.	60.0	24.0	70.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170136009	170136009	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	LRP2	NM_004525	exon12	c.A1438T	p.K480X	AGATTTTATTATT	.	81.0	26.0	72.0	0.0	.	751	.	.	.	none	.	.	PASS	Atlas-SNP
GAD1	2571	hgsc.bcm.edu	hg19	2	171700591	171700591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GAD1	NM_000817	exon7	c.G675T	p.M225I	CCTCATGGAACAA	.	119.0	40.0	122.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
MSTN	2660	hgsc.bcm.edu	hg19	2	190927181	190927181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MSTN	NM_005259	exon1	c.A142G	p.T48A	ATTTAGTGTTTTG	.	49.0	22.0	52.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
C2orf69	205327	hgsc.bcm.edu	hg19	2	200789854	200789854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	C2orf69	NM_153689	exon2	c.G403T	p.A135S	AATGTTGCTACCA	.	92.0	31.0	56.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
DGKD	8527	hgsc.bcm.edu	hg19	2	234368926	234368926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	DGKD	NM_152879	exon24	c.G2916T	p.M972I	GGAGATGCTGTCC	.	376.0	143.0	544.0	1.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
SATB1	6304	hgsc.bcm.edu	hg19	3	18390936	18390936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SATB1	NM_001195470	exon12	c.A2114G	p.E705G	ATGGCCTCTTCGT	.	175.0	73.0	202.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
EPM2AIP1	9852	hgsc.bcm.edu	hg19	3	37033483	37033483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	EPM2AIP1	NM_014805	exon1	c.G1086T	p.L362F	TGAAACCAAGAAC	.	62.0	10.0	62.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
LIMD1	8994	hgsc.bcm.edu	hg19	3	45637412	45637412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	LIMD1	NM_014240	exon1	c.T1041G	p.S347R	TTCCAGTTCTGCC	.	231.0	79.0	251.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52416419	52416419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	DNAH1	NM_015512	exon50	c.T7889C	p.L2630P	TCCTGCTCAAGGC	.	143.0	57.0	197.0	0.0	.	534	.	.	.	none	.	.	PASS	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	hg19	3	151166796	151166796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	IGSF10,NS,malignant_melanoma,0,1	IGSF10	NM_178822	exon4	c.G973A	p.G325R	CATTTCCAGACTG	.	117.0	46.0	126.0	0.0	.	279	.	.	.	none	.	.	PASS	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13601745	13601745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	BOD1L,colon,carcinoma,0,1	.	NM_148894	exon10	c.C6779T	p.S2260L	TCCACCGAGCTCG	.	149.0	16.0	171.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
RUFY3	22902	hgsc.bcm.edu	hg19	4	71588406	71588406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RUFY3	NM_001037442	exon1	c.G116T	p.W39L	GAGAATGGCTCTG	.	247.0	93.0	284.0	1.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
TAF7	6879	hgsc.bcm.edu	hg19	5	140699374	140699374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	TAF7	NM_005642	exon1	c.A238G	p.I80V	TATCAATGGTTTT	.	90.0	29.0	111.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
TFAP2A	7020	hgsc.bcm.edu	hg19	6	10398689	10398689	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	TFAP2A	NM_003220	exon7	c.C1275G	p.N425K	TTTGGCGTTGTTG	.	146.0	46.0	193.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
KIF13A	63971	hgsc.bcm.edu	hg19	6	17817447	17817447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	KIF13A	NM_001105567	exon17	c.G1804A	p.V602I	CCTGAACCACATT	.	131.0	41.0	153.0	0.0	.	276	.	.	.	none	.	.	PASS	Atlas-SNP
UHRF1BP1	54887	hgsc.bcm.edu	hg19	6	34825520	34825520	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	UHRF1BP1	NM_017754	exon13	c.C1593T	p.Y531Y	TCTCTACATTCAG	.	144.0	9.0	174.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75861881	75861881	+	Silent	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	COL12A1	NM_004370	exon19	c.A3801G	p.A1267A	CAAGTTTGCCACA	.	199.0	74.0	211.0	0.0	.	385	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM30A	55754	hgsc.bcm.edu	hg19	6	75977367	75977367	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	TMEM30A	NM_018247	exon2	c.A335T	p.K112M	AATGACTTTTCCA	.	44.0	18.0	41.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
HDAC2	3066	hgsc.bcm.edu	hg19	6	114264645	114264645	+	Silent	SNP	A	A	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	HDAC2	NM_001527	exon12	c.T1248G	p.A416A	ATCACAAGCTATC	.	15.0	8.0	16.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
ELMO1	9844	hgsc.bcm.edu	hg19	7	37053037	37053037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ELMO1	NM_014800	exon16	c.G1304A	p.S435N	GTCTCACTAGCTG	.	88.0	31.0	122.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
MLL5	55904	hgsc.bcm.edu	hg19	7	104717538	104717538	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MLL5	NM_018682	exon9	c.G897C	p.E299D	GAGGGAGGCACAA	.	166.0	19.0	180.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116423474	116423474	+	Missense_Mutation	SNP	T	T	C	rs121913245		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	MET,rectum,carcinoma,+1,5	MET	NM_001127500	exon19	c.T3803C	p.M1268T	AGTGGATGGCTTT	.	83.0	27.0	98.0	0.0	.	412	.	.	.	weak	.	.	PASS	Atlas-SNP
GPR37	2861	hgsc.bcm.edu	hg19	7	124405027	124405027	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GPR37	NM_005302	exon1	c.C4T	p.R2X	GGGCTCGCATGGC	.	6.0	4.0	4.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
NRG1	3084	hgsc.bcm.edu	hg19	8	32616873	32616873	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NRG1	NM_013956	exon11	c.A995T	p.E332V	AGAGAGAAGCAGA	.	145.0	41.0	157.0	0.0	.	260	.	.	.	none	.	.	PASS	Atlas-SNP
NKX6-3	157848	hgsc.bcm.edu	hg19	8	41504065	41504065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NKX6-3	NM_152568	exon2	c.C311A	p.P104Q	TCCAGCGGCTTGT	.	24.0	15.0	32.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
NCOA2	10499	hgsc.bcm.edu	hg19	8	71053580	71053580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	NCOA2,NS,carcinoma,0,1	NCOA2	NM_006540	exon14	c.C2867T	p.P956L	CTCTGCGGTGCCC	.	152.0	28.0	155.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113316994	113316994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CSMD3	NM_198123	exon52	c.C8222T	p.P2741L	CCATTAGGAAGAC	.	136.0	53.0	151.0	0.0	.	2325	.	.	.	none	.	.	PASS	Atlas-SNP
PHF20L1	51105	hgsc.bcm.edu	hg19	8	133806739	133806739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PHF20L1	NM_016018	exon3	c.A167G	p.E56G	ATGATGAGTGGAT	.	140.0	48.0	130.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
PALM2	114299	hgsc.bcm.edu	hg19	9	112705604	112705604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PALM2	NM_053016	exon7	c.A1135G	p.T379A	GACACCACAGAGC	.	128.0	19.0	118.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
FAM102A	399665	hgsc.bcm.edu	hg19	9	130707096	130707096	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	FAM102A	NM_001035254	exon9	c.C999T	p.I333I	CTGCACGATCTTC	.	39.0	23.0	60.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
INS	3630	hgsc.bcm.edu	hg19	11	2181135	2181135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	INS	NM_001185097	exon3	c.C280A	p.Q94K	AGCATTGTTCCAC	.	51.0	18.0	73.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
PDE3B	5140	hgsc.bcm.edu	hg19	11	14808189	14808189	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PDE3B	NM_000922	exon3	c.A1236T	p.E412D	TTCTGAAATAGAG	.	150.0	59.0	169.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
CHRM1	1128	hgsc.bcm.edu	hg19	11	62677207	62677207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CHRM1	NM_000738	exon2	c.C1366T	p.P456S	GGGAGGGAGTGCG	.	70.0	15.0	86.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
CHRM1	1128	hgsc.bcm.edu	hg19	11	62677510	62677510	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CHRM1	NM_000738	exon2	c.T1063A	p.F355I	GCGAGAAGGTCTT	.	59.0	25.0	78.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
SYTL2	54843	hgsc.bcm.edu	hg19	11	85409045	85409045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SYTL2	NM_206927	exon11	c.T3444G	p.S1148R	TAGATGACTTCCC	.	50.0	7.0	52.0	0.0	.	231	.	.	.	none	.	.	PASS	Atlas-SNP
NCAPD3	23310	hgsc.bcm.edu	hg19	11	134063948	134063948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NCAPD3	NM_015261	exon15	c.G1787A	p.R596Q	TGCTTCCGGACAG	.	100.0	14.0	101.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	hg19	12	50745132	50745132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	FAM186A_ENST00000327337,caecum,carcinoma,0,1	FAM186A	NM_001145475	exon4	c.C5483A	p.S1828Y	GCCCGAGATATTG	.	72.0	33.0	89.0	0.0	.	181	.	.	.	none	.	.	PASS	Atlas-SNP
GALNT6	11226	hgsc.bcm.edu	hg19	12	51758021	51758021	+	Silent	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	GALNT6,NS,carcinoma,0,1	GALNT6	NM_007210	exon6	c.C933G	p.P311P	CTGGACGGGCTTG	.	270.0	97.0	291.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120569801	120569801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GCN1L1	NM_006836	exon54	c.G7343A	p.G2448E	AGGCACCCGGCTG	.	173.0	25.0	221.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
ATP11A	23250	hgsc.bcm.edu	hg19	13	113526110	113526110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ATP11A	NM_032189	exon26	c.T3053C	p.L1018P	TTACACTAAAGGT	.	77.0	33.0	99.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP
GPHN	10243	hgsc.bcm.edu	hg19	14	67291218	67291218	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GPHN	NM_001024218	exon4	c.A228C	p.E76D	TGATGAAAAGGAA	.	70.0	19.0	94.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	hg19	15	62211634	62211634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	VPS13C	NM_020821	exon58	c.A7492G	p.T2498A	CTTCTGTATATCC	.	103.0	42.0	83.0	0.0	.	506	.	.	.	none	.	.	PASS	Atlas-SNP
RPL3L	6123	hgsc.bcm.edu	hg19	16	1995508	1995508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RPL3L	NM_005061	exon9	c.G1159T	p.A387S	TGAAGGCCCTCTT	.	66.0	27.0	89.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
SCNN1B	6338	hgsc.bcm.edu	hg19	16	23360139	23360139	+	Silent	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SCNN1B	NM_000336	exon2	c.C219G	p.T73T	CAGGACCTACTTG	.	227.0	102.0	289.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
MYLK3	91807	hgsc.bcm.edu	hg19	16	46781755	46781755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MYLK3	NM_182493	exon1	c.G351T	p.M117I	AGCCACCATCCTG	.	93.0	48.0	146.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
EDC4	23644	hgsc.bcm.edu	hg19	16	67910858	67910858	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	EDC4	NM_014329	exon4	c.T434G	p.L145W	CCTTCTTGGCCTA	.	123.0	50.0	173.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	hg19	17	18057182	18057182	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MYO15A	NM_016239	exon42	c.C8060G	p.A2687G	AGGACGCCCCCTG	.	294.0	70.0	272.0	0.0	.	268	.	.	.	none	.	.	PASS	Atlas-SNP
ITGA2B	3674	hgsc.bcm.edu	hg19	17	42449792	42449792	+	Splice_Site	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ITGA2B	NM_000419	exon31	c.3061-1G>A	.	GCCGACCTGGGGG	.	97.0	22.0	84.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
C17orf104	284071	hgsc.bcm.edu	hg19	17	42744196	42744196	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	C17orf104	NM_001145080	exon5	c.A917T	p.Q306L	TACAGCAAAAAAG	.	40.0	14.0	43.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
SPAG9	9043	hgsc.bcm.edu	hg19	17	49067112	49067112	+	Silent	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SPAG9	NM_001130528	exon21	c.C2739A	p.V913V	TGTGTAGACGCCA	.	259.0	56.0	221.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
METTL23	124512	hgsc.bcm.edu	hg19	17	74729098	74729098	+	Silent	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	METTL23	NM_001206984	exon3	c.C123A	p.A41A	GGCTGCCAAATGT	.	80.0	13.0	74.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
AATK	9625	hgsc.bcm.edu	hg19	17	79095314	79095314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AATK	NM_001080395	exon11	c.C2422A	p.P808T	GAAGTGGGGCTCC	.	60.0	15.0	69.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
MALT1	10892	hgsc.bcm.edu	hg19	18	56400802	56400802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MALT1	NM_006785	exon11	c.A1396G	p.K466E	TGTAGGAAAAGGT	.	66.0	5.0	59.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF799	90576	hgsc.bcm.edu	hg19	19	12502161	12502161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	ZNF799_ENST00000430385,NS,carcinoma,0,2	ZNF799	NM_001080821	exon4	c.T1051A	p.S351T	TCAGTGAACTAGG	.	81.0	5.0	100.0	1.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
SYDE1	85360	hgsc.bcm.edu	hg19	19	15220001	15220001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SYDE1	NM_033025	exon2	c.A223T	p.S75C	CTGCAAAGCCTGG	.	37.0	13.0	51.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38385244	38385244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	WDR87	NM_031951	exon4	c.C982A	p.Q328K	GCAACTGCTGGGG	.	285.0	26.0	332.0	0.0	.	191	.	.	.	none	.	.	PASS	Atlas-SNP
PLTP	5360	hgsc.bcm.edu	hg19	20	44539886	44539886	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PLTP	NM_182676	exon3	c.G105A	p.K35K	CTCCTGCTTCACT	.	91.0	32.0	124.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
SAMSN1	64092	hgsc.bcm.edu	hg19	21	15889252	15889252	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SAMSN1	NM_001256370	exon4	c.A444T	p.K148N	ACCCACTTTTTTC	.	51.0	21.0	47.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
TRPM2	7226	hgsc.bcm.edu	hg19	21	45825794	45825794	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	TRPM2	NM_003307	exon18	c.C2664T	p.I888I	GCTCATCCCGGCG	.	19.0	10.0	18.0	0.0	.	196	.	.	.	none	.	.	PASS	Atlas-SNP
ADORA2A	135	hgsc.bcm.edu	hg19	22	24836558	24836558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ADORA2A	NM_000675	exon3	c.G340T	p.G114C	TACAATGGCTTGG	.	129.0	50.0	155.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
SMC1A	8243	hgsc.bcm.edu	hg19	X	53440302	53440302	+	Silent	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SMC1A	NM_006306	exon4	c.G495C	p.A165A	CTCCTGCGCCAGC	.	50.0	40.0	102.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
GLRA4	441509	hgsc.bcm.edu	hg19	X	102973934	102973934	+	Silent	SNP	T	T	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GLRA4	NM_001172285	exon7	c.A984T	p.P328P	GATGAATGGGAAA	.	86.0	22.0	100.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
UPF3B	65109	hgsc.bcm.edu	hg19	X	118985467	118985467	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	UPF3B	NM_023010	exon3	c.G361C	p.D121H	TATTGTCAAGGAA	.	159.0	121.0	214.0	1.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
CENPL	91687	hgsc.bcm.edu	hg19	1	173772297	173772298	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CENPL	NM_001127181	exon6	c.905_906insA	p.I302fs	.	.	74.0	18.0	123.0	0.0	.	26	.	0.243243	0	none	.	.	PASS	Atlas-INDEL
LAMB4	22798	hgsc.bcm.edu	hg19	7	107732109	107732120	+	In_Frame_Del	DEL	CCTCGTAGAGAT	CCTCGTAGAGAT	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	CCTCGTAGAGAT	CCTCGTAGAGAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	LAMB4	NM_007356	exon14	c.1653_1664del	p.551_555del	.	.	119.0	23.0	174.0	0.0	.	253	.	0.193277	0	none	.	.	PASS	Atlas-Indel,Pindel
FBXW7	55294	hgsc.bcm.edu	hg19	4	153250883	153250883	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	FBXW7_NM_018315_2,NS,carcinoma,-1,5	FBXW7	NM_033632	exon8	c.1178delG	p.R393fs	.	.	98.0	35.0	89.0	0.0	.	2157	.	0.357143	0	none	.	.	PASS	Atlas-Indel,Pindel
PDCD5	9141	hgsc.bcm.edu	hg19	19	33077794	33077794	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PDCD5	NM_004708	exon5	c.288delT	p.L96fs	.	.	124.0	43.0	144.0	0.0	.	18	.	0.346774	0	none	.	.	PASS	Atlas-Indel,Pindel
MAP3K7	6885	hgsc.bcm.edu	hg19	6	91226399	91226400	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MAP3K7	NM_145331	exon17	c.1642_1643del	p.548_548del	.	.	66.0	20.0	76.0	0.0	.	100	.	0.30303	0	none	.	.	PASS	Atlas-INDEL
YARS2	51067	hgsc.bcm.edu	hg19	12	32908454	32908454	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	YARS2,larynx,carcinoma,0,1	YARS2	NM_001040436	exon1	c.356delT	p.L119fs	.	.	47.0	18.0	29.0	0.0	.	33	.	0.382979	0	none	.	.	PASS	Atlas-INDEL
AKR1C2	1646	hgsc.bcm.edu	hg19	10	5038014	5038014	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AKR1C2	NM_001354	exon8	c.615delC	p.F205fs	.	.	638.0	51.0	706.0	0.0	.	68	.	0.0799373	0	none	.	.	PASS	Atlas-Indel,Pindel
PTPN3	5774	hgsc.bcm.edu	hg19	9	112219466	112219466	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PTPN3	NM_001145368	exon4	c.277delA	p.K93fs	.	.	113.0	32.0	167.0	0.0	.	106	.	0.283186	0	none	.	.	PASS	Atlas-Indel,Pindel
CEP350	9857	hgsc.bcm.edu	hg19	1	179959644	179959645	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CEP350	NM_014810	exon4	c.122_123del	p.41_41del	.	.	66.0	14.0	67.0	0.0	.	418	.	0.212121	0	none	.	.	PASS	Atlas-Indel,Pindel
GRIK2	2898	hgsc.bcm.edu	hg19	6	102513771	102513771	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GRIK2	NM_001166247	exon16	c.2661delA	p.S887fs	.	.	80.0	37.0	96.0	0.0	.	487	.	0.4625	0	none	.	.	PASS	Atlas-Indel,Pindel
NEFH	4744	hgsc.bcm.edu	hg19	22	29885591	29885592	+	In_Frame_Ins	INS	-	-	CCTGAGAAGGCCAAGTCC	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.,2	NEFH	NM_021076	exon4	c.1962_1963insCCTGAGAAGGCCAAGTCC	p.S654delinsSPEKAKS	.	.	226.0	59.0	329.0	0.0	.	178	.	0.261062	0	none	.	.	PASS	Atlas-INDEL
SCN10A	6336	hgsc.bcm.edu	hg19	3	38740022	38740022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SCN10A	NM_006514	exon27	c.4690delC	p.Q1564fs	.	.	107.0	18.0	158.0	0.0	.	359	.	0.168224	0	none	.	.	PASS	Atlas-INDEL
ZNF792	126375	hgsc.bcm.edu	hg19	19	35450211	35450211	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ZNF792	NM_175872	exon4	c.549delC	p.N183fs	.	.	273.0	101.0	348.0	0.0	.	46	.	0.369963	0	none	.	.	PASS	Atlas-Indel,Pindel
PPIP5K1	9677	hgsc.bcm.edu	hg19	15	43863609	43863609	+	Splice_Site	DEL	C	C	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PPIP5K1	NM_014659	exon25	c.2955+2G>-	.	.	.	91.0	18.0	106.0	0.0	.	34	.	0.197802	0	none	.	.	PASS	Atlas-INDEL
MTG1	92170	hgsc.bcm.edu	hg19	10	135209749	135209750	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MTG1	NM_138384	exon3	c.260_261insGC	p.L87fs	.	.	108.0	42.0	139.0	0.0	.	38	.	0.388889	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF831	128611	hgsc.bcm.edu	hg19	20	57782069	57782069	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ZNF831	NM_178457	exon3	c.3984delG	p.L1328fs	.	.	104.0	43.0	108.0	0.0	.	287	.	0.413462	0	none	.	.	PASS	Atlas-Indel,Pindel
SCN10A	6336	hgsc.bcm.edu	hg19	3	38740016	38740018	+	In_Frame_Del	DEL	ACT	ACT	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	ACT	ACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SCN10A	NM_006514	exon27	c.4694_4696del	p.1565_1566del	.	.	118.0	18.0	164.0	0.0	.	359	.	0.152542	0	none	.	.	PASS	Atlas-INDEL
MAP3K7	6885	hgsc.bcm.edu	hg19	6	91226399	91226401	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MAP3K7	NM_145331	exon17	c.1641_1643del	p.547_548del	.	.	67.0	13.0	77.0	0.0	.	100	.	0.194	.	none	.	.	PASS	Pindel
ABCA4	24	hgsc.bcm.edu	hg19	1	94522320	94522320	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ABCA4	NM_000350	exon15	c.2220delC	p.F740fs	.	.	231.0	60.0	322.0	0.0	.	275	.	0.260	.	none	.	.	PASS	Pindel
ZNF256	10172	hgsc.bcm.edu	hg19	19	58452565	58452565	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ZNF256	NM_005773	exon3	c.1612delA	p.R538fs	.	.	98.0	19.0	129.0	0.0	.	117	.	0.194	.	none	.	.	PASS	Pindel
SCN10A	6336	hgsc.bcm.edu	hg19	3	38740016	38740023	+	Frame_Shift_Del	DEL	ACTTTGAA	ACTTTGAA	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	ACTTTGAA	ACTTTGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SCN10A	NM_006514	exon27	c.4689_4696del	p.1563_1566del	.	.	119.0	15.0	162.0	0.0	.	359	.	0.126	.	none	.	.	PASS	Pindel
