Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
NIPAL3	57185	hgsc.bcm.edu	hg19	1	24768627	24768627	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	NIPAL3	NM_020448	exon4	c.T245A	p.L82Q	TGTTCCTGATGCT	.	51.0	16.0	56.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
FPGT-TNNI3K	100526835	hgsc.bcm.edu	hg19	1	74808658	74808658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.,1	.	NM_001199327	exon10	c.C1118A	p.T373N	GAGATACCCCCTT	.	140.0	55.0	183.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
WNT2B	7482	hgsc.bcm.edu	hg19	1	113058824	113058824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	WNT2B	NM_024494	exon3	c.C466A	p.R156S	ATTACTCGCGCCT	.	132.0	46.0	169.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
PGLYRP3	114771	hgsc.bcm.edu	hg19	1	153283087	153283087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	PGLYRP3	NM_052891	exon1	c.G55A	p.D19N	ACTTACCCCAAGC	.	129.0	47.0	196.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
NUP210L	91181	hgsc.bcm.edu	hg19	1	153974267	153974267	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	NUP210L	NM_207308	exon36	c.C5125G	p.Q1709E	TATCTTGTTTGTG	.	99.0	30.0	146.0	0.0	.	181	.	.	.	none	.	.	PASS	Atlas-SNP
HAX1	10456	hgsc.bcm.edu	hg19	1	154247707	154247707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	HAX1	NM_006118	exon5	c.T634C	p.S212P	AGCATCTCTGTGA	.	100.0	37.0	124.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1614	57710	hgsc.bcm.edu	hg19	1	180910417	180910417	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	KIAA1614	NM_020950	exon7	c.A3155T	p.H1052L	CCCTGCACCCGGT	.	146.0	49.0	154.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181452978	181452978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	CACNA1E	NM_001205293	exon1	c.C98G	p.S33W	CGGCCTCGGGGCA	.	139.0	44.0	138.0	0.0	.	778	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	hg19	1	225539372	225539372	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	DNAH14	NM_001373	exon70	c.C11041T	p.Q3681X	GAAAGTCAACATC	.	133.0	44.0	173.0	0.0	.	300	.	.	.	none	.	.	PASS	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	hg19	1	232615472	232615472	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	SIPA1L2	NM_020808	exon5	c.T1986G	p.D662E	CGTGGAATCAGCT	.	40.0	12.0	42.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
C2orf78	388960	hgsc.bcm.edu	hg19	2	74043598	74043598	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	C2orf78	NM_001080474	exon3	c.T2248G	p.Y750D	GTGGCTTACCCTG	.	236.0	56.0	214.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
ATF2	1386	hgsc.bcm.edu	hg19	2	175945471	175945471	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	ATF2	NM_001880	exon13	c.A1208C	p.N403T	ACTTCATTTCTCA	.	59.0	26.0	53.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179575930	179575930	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	TTN	NM_001267550	exon97	c.C28033G	p.P9345A	CATTTGGGCTGTC	.	176.0	93.0	142.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
SLC40A1	30061	hgsc.bcm.edu	hg19	2	190428539	190428539	+	Silent	SNP	T	T	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	SLC40A1	NM_014585	exon7	c.A1173T	p.V391V	CATGAATACAGAG	.	117.0	25.0	119.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
FGD5	152273	hgsc.bcm.edu	hg19	3	14861143	14861143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	FGD5	NM_152536	exon1	c.G565A	p.V189I	GAGGGGGTCTTCC	.	125.0	51.0	101.0	0.0	.	248	.	.	.	none	.	.	PASS	Atlas-SNP
TRANK1	9881	hgsc.bcm.edu	hg19	3	36898563	36898563	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	TRANK1	NM_014831	exon12	c.G2518C	p.G840R	TGCTTCCTTTCAG	.	62.0	22.0	80.0	0.0	.	398	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52422336	52422336	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	DNAH1	NM_015512	exon57	c.G9157C	p.V3053L	AAGGCCGTGGAGC	.	91.0	40.0	80.0	0.0	.	534	.	.	.	none	.	.	PASS	Atlas-SNP
OSBPL11	114885	hgsc.bcm.edu	hg19	3	125266348	125266348	+	Silent	SNP	T	T	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	OSBPL11	NM_022776	exon10	c.A1743G	p.V581V	CAGTTCTACCCAA	.	129.0	67.0	136.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM42	287015	hgsc.bcm.edu	hg19	3	140397260	140397260	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	TRIM42	NM_152616	exon1	c.C189T	p.C63C	CAACTGCCATTGG	.	109.0	51.0	82.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
PLD1	5337	hgsc.bcm.edu	hg19	3	171362716	171362716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	PLD1	NM_002662	exon22	c.A2527G	p.M843V	AGTGCATGATTGC	.	86.0	19.0	75.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
MUC20	200958	hgsc.bcm.edu	hg19	3	195453023	195453023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	MUC20	NM_152673	exon3	c.A1036G	p.T346A	GCCACGACCCTCA	.	283.0	109.0	234.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
TADA2B	93624	hgsc.bcm.edu	hg19	4	7056602	7056602	+	Silent	SNP	T	T	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	TADA2B	NM_152293	exon2	c.T1084C	p.L362L	AGCTCTTTAAACT	.	102.0	44.0	132.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
MOB1B	92597	hgsc.bcm.edu	hg19	4	71768265	71768265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	.	NM_001244767	exon1	c.G12T	p.L4F	CTTCTTGTTGTGA	.	36.0	10.0	52.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PRDM5	11107	hgsc.bcm.edu	hg19	4	121702315	121702315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	PRDM5	NM_018699	exon12	c.C1426T	p.L476F	TTCTAAGCACTGA	.	89.0	22.0	94.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF622	90441	hgsc.bcm.edu	hg19	5	16463272	16463272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	ZNF622	NM_033414	exon3	c.A994G	p.K332E	AGAGCTTACAGTG	.	253.0	84.0	287.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
MAN2A1	4124	hgsc.bcm.edu	hg19	5	109155930	109155930	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	MAN2A1	NM_002372	exon15	c.A2338C	p.T780P	ATGATGACTAAAG	.	43.0	19.0	50.0	0.0	.	136	.	.	.	none	.	.	PASS	Atlas-SNP
SNCAIP	9627	hgsc.bcm.edu	hg19	5	121758736	121758736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	SNCAIP	NM_005460	exon4	c.G304A	p.V102M	CAGAAAGTGGTTG	.	186.0	62.0	224.0	0.0	.	308	.	.	.	none	.	.	PASS	Atlas-SNP
SIL1	64374	hgsc.bcm.edu	hg19	5	138378379	138378379	+	Missense_Mutation	SNP	G	G	T	rs55660322	alternate_allele	TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	SIL1	NM_001037633	exon6	c.C383A	p.S128Y	TCCTGAGATGTGT	.	62.0	23.0	60.0	0.0	.	31	.	.	.	alt	.	.	PASS	Atlas-SNP
PCDHGA2	56113	hgsc.bcm.edu	hg19	5	140720354	140720354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	PCDHGA2	NM_018915	exon1	c.T1816C	p.Y606H	CTGTCTTACCACC	.	67.0	19.0	56.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
POU4F3	5459	hgsc.bcm.edu	hg19	5	145719332	145719332	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	POU4F3	NM_002700	exon2	c.C342T	p.G114G	CCAGGGCCTCGAA	.	46.0	21.0	50.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
DUSP1	1843	hgsc.bcm.edu	hg19	5	172196606	172196606	+	Silent	SNP	G	G	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	DUSP1	NM_004417	exon3	c.C705A	p.S235S	GAACCAGGAGCTG	.	53.0	18.0	92.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
MOG	4340	hgsc.bcm.edu	hg19	6	29634002	29634002	+	Silent	SNP	T	T	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	MOG	NM_001008229	exon3	c.T510G	p.T170T	GATCACTGTTGGC	.	46.0	20.0	56.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
LOC554223	0	hgsc.bcm.edu	hg19	6	29759857	29759857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	.	NM_001207043	exon1	c.G73T	p.V25F	ACCTGTGTCGGGT	.	9.0	7.0	10.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MDC1	9656	hgsc.bcm.edu	hg19	6	30681674	30681674	+	Silent	SNP	G	G	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	MDC1	NM_014641	exon3	c.C423G	p.S141S	GCCCCGGGAGACA	.	109.0	47.0	144.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
MAPK14	1432	hgsc.bcm.edu	hg19	6	36027090	36027090	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	MAPK14	NM_139012	exon3	c.A271C	p.T91P	GTTTTTACACCTG	.	21.0	10.0	22.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
MAPK14	1432	hgsc.bcm.edu	hg19	6	36027091	36027091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	MAPK14	NM_139012	exon3	c.C272A	p.T91K	TTTTTACACCTGC	.	21.0	10.0	22.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF292	23036	hgsc.bcm.edu	hg19	6	87967887	87967887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	ZNF292	NM_015021	exon8	c.A4540G	p.T1514A	GTTTCAACAGGTT	.	57.0	19.0	104.0	0.0	.	479	.	.	.	none	.	.	PASS	Atlas-SNP
CASP8AP2	9994	hgsc.bcm.edu	hg19	6	90575693	90575693	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	CASP8AP2	NM_001137667	exon8	c.C2684G	p.A895G	ATTCAGCTCATTC	.	173.0	50.0	199.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
HOXA7	3204	hgsc.bcm.edu	hg19	7	27194784	27194784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	HOXA7	NM_006896	exon2	c.A437G	p.E146G	TCCTTCTCCAGCT	.	72.0	23.0	66.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82545774	82545774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	PCLO	NM_014510	exon7	c.G11528A	p.R3843K	GTTGGTCTTGTGC	.	204.0	42.0	171.0	0.0	.	1506	.	.	.	none	.	.	PASS	Atlas-SNP
UBN2	254048	hgsc.bcm.edu	hg19	7	138943310	138943310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	UBN2	NM_173569	exon4	c.G740T	p.R247L	AGTTTCGCCAAGC	.	76.0	38.0	83.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
GIMAP8	155038	hgsc.bcm.edu	hg19	7	150171317	150171317	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	GIMAP8	NM_175571	exon4	c.C900T	p.I300I	TTCGATCATTGAT	.	159.0	40.0	118.0	0.0	.	136	.	.	.	none	.	.	PASS	Atlas-SNP
AGPAT6	137964	hgsc.bcm.edu	hg19	8	41476269	41476269	+	Silent	SNP	C	C	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	AGPAT6	NM_178819	exon11	c.C1120A	p.R374R	CTGCTGCGAATGA	.	66.0	25.0	70.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
OXR1	55074	hgsc.bcm.edu	hg19	8	107719085	107719085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	OXR1	NM_001198532	exon8	c.A1339G	p.N447D	AAAGGTAATTCAG	.	139.0	59.0	140.0	0.0	.	190	.	.	.	none	.	.	PASS	Atlas-SNP
FAM83A	84985	hgsc.bcm.edu	hg19	8	124195568	124195568	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	FAM83A	NM_032899	exon1	c.A472C	p.T158P	ACCCGGACTAGCC	.	43.0	14.0	50.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
FAM83A	84985	hgsc.bcm.edu	hg19	8	124195569	124195569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	FAM83A	NM_032899	exon1	c.C473T	p.T158I	CCCGGACTAGCCA	.	45.0	14.0	48.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
PKN3	29941	hgsc.bcm.edu	hg19	9	131477477	131477477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	PKN3,colon,carcinoma,0,1	PKN3	NM_013355	exon14	c.G1679A	p.R560H	ACTTCCGCTGCTT	.	108.0	38.0	146.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
RXRA	6256	hgsc.bcm.edu	hg19	9	137325968	137325968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	RXRA	NM_002957	exon9	c.C1156T	p.P386S	TCGAACCCGGCCG	.	59.0	21.0	46.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	hg19	10	29756744	29756744	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	SVIL	NM_021738	exon33	c.A5904T	p.E1968D	GGAGCCTTCATCA	.	66.0	23.0	73.0	0.0	.	226	.	.	.	none	.	.	PASS	Atlas-SNP
TET1	80312	hgsc.bcm.edu	hg19	10	70451029	70451029	+	Missense_Mutation	SNP	A	A	G	rs147755307		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	TET1	NM_030625	exon12	c.A5869G	p.M1957V	TCTCCAATGGAAG	.	85.0	4.0	102.0	0.0	.	255	.	.	.	weak	A|1.000;G|0.000	0.000	PASS	Atlas-SNP
LRRC20	55222	hgsc.bcm.edu	hg19	10	72083705	72083705	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	LRRC20	NM_207119	exon4	c.C314G	p.S105C	TTCCGGGACAGGT	.	96.0	45.0	98.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	hg19	10	73550921	73550921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	CDH23	NM_022124	exon45	c.G6082A	p.D2028N	ATCATTGACCGGG	.	38.0	15.0	44.0	0.0	.	365	.	.	.	none	.	.	PASS	Atlas-SNP
SLC16A12	387700	hgsc.bcm.edu	hg19	10	91195920	91195920	+	Silent	SNP	T	T	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	SLC16A12	NM_213606	exon7	c.A1185T	p.P395P	CACTACTGGGATC	.	102.0	37.0	109.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
SLIT1	6585	hgsc.bcm.edu	hg19	10	98803147	98803147	+	Silent	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	SLIT1	NM_003061	exon19	c.C1977T	p.T659T	CTGGAGGGTGTCG	.	106.0	36.0	110.0	0.0	.	154	.	.	.	none	.	.	PASS	Atlas-SNP
TIAL1	7073	hgsc.bcm.edu	hg19	10	121339523	121339523	+	Splice_Site	SNP	C	C	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	TIAL1	NM_001033925	exon7	c.423-1G>C	.	GCATCCCTGTGAA	.	63.0	26.0	78.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
RIC8A	60626	hgsc.bcm.edu	hg19	11	209726	209726	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	RIC8A	NM_021932	exon3	c.A452C	p.Y151S	GGCTGTACCGTGA	.	55.0	15.0	63.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
KCNQ1	3784	hgsc.bcm.edu	hg19	11	2799217	2799217	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	KCNQ1	NM_000218	exon15	c.G1744C	p.D582H	AGCAAGGATCGCG	.	39.0	19.0	39.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
C11orf58	10944	hgsc.bcm.edu	hg19	11	16776551	16776551	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	C11orf58	NM_014267	exon5	c.T452G	p.L151R	AAGAACTCCAAGC	.	102.0	34.0	148.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP42	143872	hgsc.bcm.edu	hg19	11	100843950	100843950	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	ARHGAP42	NM_152432	exon18	c.T1595A	p.L532H	CAAATCTTGGTGT	.	68.0	30.0	103.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
HSPB2	3316	hgsc.bcm.edu	hg19	11	111784216	111784216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	HSPB2	NM_001541	exon2	c.T146C	p.V49A	ACTATGTCCGGCC	.	27.0	10.0	38.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
BCL9L	283149	hgsc.bcm.edu	hg19	11	118771955	118771955	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	BCL9L	NM_182557	exon6	c.C2497G	p.Q833E	TCTTCTGCGGGCC	.	62.0	20.0	75.0	0.0	.	254	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP32	9743	hgsc.bcm.edu	hg19	11	129034246	129034246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	ARHGAP32	NM_001142685	exon2	c.C193T	p.R65W	CAGGCCGCTCTCG	.	57.0	14.0	60.0	0.0	.	307	.	.	.	none	.	.	PASS	Atlas-SNP
TMTC1	83857	hgsc.bcm.edu	hg19	12	29908774	29908774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	TMTC1,NS,carcinoma,0,1	TMTC1	NM_001193451	exon4	c.T599C	p.V200A	GGAGACACCGTGG	.	172.0	37.0	150.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
IFNG	3458	hgsc.bcm.edu	hg19	12	68552039	68552039	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	IFNG	NM_000619	exon2	c.A115C	p.N39H	CTGCATTCTAAAA	.	63.0	31.0	50.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	hg19	13	42882690	42882690	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	AKAP11	NM_016248	exon9	c.A5218T	p.S1740C	AATTTAAGTTTTG	.	47.0	26.0	72.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D4	9882	hgsc.bcm.edu	hg19	13	75869072	75869072	+	Silent	SNP	G	G	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	TBC1D4	NM_014832	exon18	c.C3234A	p.I1078I	GGGGCTGATTTCA	.	75.0	21.0	117.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
OXA1L	5018	hgsc.bcm.edu	hg19	14	23240288	23240288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	OXA1L	NM_005015	exon8	c.G1181T	p.R394L	GTCTCCGGATTCC	.	89.0	4.0	120.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
LRP10	26020	hgsc.bcm.edu	hg19	14	23344406	23344406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	LRP10	NM_014045	exon4	c.G358A	p.G120R	TATGCTGGGGCCA	.	67.0	14.0	65.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
LRP10	26020	hgsc.bcm.edu	hg19	14	23344686	23344686	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	LRP10	NM_014045	exon5	c.G529C	p.D177H	AGCTCAGACCCCT	.	83.0	23.0	112.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
SLC7A8	23428	hgsc.bcm.edu	hg19	14	23634563	23634563	+	Silent	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	SLC7A8	NM_012244	exon3	c.C439T	p.L147L	GCTGCAGCACGTA	.	67.0	21.0	87.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
HOMEZ	57594	hgsc.bcm.edu	hg19	14	23744802	23744802	+	Silent	SNP	A	A	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	HOMEZ	NM_020834	exon2	c.T1635C	p.D545D	GATCACATCATCA	.	115.0	58.0	110.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
RDH12	145226	hgsc.bcm.edu	hg19	14	68192868	68192868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	RDH12	NM_152443	exon6	c.C444A	p.H148Q	CAACCACCTGGGT	.	86.0	38.0	90.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
PPP2R5C	5527	hgsc.bcm.edu	hg19	14	102368158	102368158	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	PPP2R5C	NM_001161726	exon11	c.G1120C	p.E374Q	CCATCAGAATTTG	.	90.0	35.0	82.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
GATM	2628	hgsc.bcm.edu	hg19	15	45668863	45668863	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	GATM	NM_001482	exon2	c.T224G	p.L75X	TCCTCTAAGGGGT	.	73.0	31.0	57.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
FGF7	2252	hgsc.bcm.edu	hg19	15	49716529	49716529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	FGF7	NM_002009	exon2	c.C35G	p.T12S	TGCCAACTTTGCT	.	53.0	22.0	87.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
C16orf96	342346	hgsc.bcm.edu	hg19	16	4628972	4628972	+	Silent	SNP	A	A	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	C16orf96	NM_001145011	exon6	c.A2187C	p.T729T	CGGGACAACAGTG	.	116.0	20.0	100.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
SETD1A	9739	hgsc.bcm.edu	hg19	16	30982956	30982956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	SETD1A	NM_014712	exon13	c.G3274A	p.V1092M	GCACCTGTGGAGG	.	67.0	14.0	61.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
NKD1	85407	hgsc.bcm.edu	hg19	16	50583410	50583410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	NKD1	NM_033119	exon3	c.G136A	p.G46S	CCGGGCGGTGTCT	.	70.0	38.0	52.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
DDX28	55794	hgsc.bcm.edu	hg19	16	68057034	68057034	+	Silent	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	DDX28	NM_018380	exon1	c.C72T	p.L24L	GACCGTGAGGCCC	.	25.0	15.0	11.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
WWP2	11060	hgsc.bcm.edu	hg19	16	69820957	69820957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	WWP2	NM_001270454	exon2	c.T44A	p.F15Y	TGCCTTTTGAGAA	.	83.0	19.0	73.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
MINK1	50488	hgsc.bcm.edu	hg19	17	4799846	4799846	+	Silent	SNP	T	T	C	rs372981603	alternate_allele	TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	MINK1	NM_153827	exon30	c.T3738C	p.D1246D	TAAGGATGTGGTG	.	107.0	34.0	67.0	0.0	.	110	.	.	.	alt	.	.	PASS	Atlas-SNP
COX10	1352	hgsc.bcm.edu	hg19	17	14110151	14110151	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	COX10	NM_001303	exon7	c.T953A	p.L318H	GAATCCTCTACTC	.	91.0	45.0	66.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
FLII	2314	hgsc.bcm.edu	hg19	17	18151250	18151250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	FLII	NM_002018	exon19	c.T2288C	p.M763T	AGCCGCATTCTTG	.	78.0	39.0	78.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM65	201292	hgsc.bcm.edu	hg19	17	73887171	73887171	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	TRIM65	NM_173547	exon6	c.A1243T	p.N415Y	CAATGTTGTCTGT	.	20.0	8.0	23.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
CBX4	8535	hgsc.bcm.edu	hg19	17	77807927	77807927	+	Missense_Mutation	SNP	A	A	G	rs200965379		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	CBX4,uveal_tract,malignant_melanoma,0,1	CBX4	NM_003655	exon5	c.T1514C	p.V505A	GCCGCCACCGCCA	.	44.0	6.0	44.0	1.0	.	40	.	.	.	weak	.	.	PASS	Atlas-SNP
SLC25A52	147407	hgsc.bcm.edu	hg19	18	29340393	29340393	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	.	NM_001034172	exon1	c.C262T	p.R88X	AATTTCGAAATCC	.	118.0	36.0	132.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	hg19	19	13372413	13372413	+	Silent	SNP	G	G	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	CACNA1A	NM_001127221	exon26	c.C4104T	p.D1368D	CACACAGTCAAAC	.	68.0	27.0	51.0	0.0	.	715	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP33	115703	hgsc.bcm.edu	hg19	19	36279024	36279024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	ARHGAP33	NM_052948	exon21	c.C3074T	p.S1025F	CCTCCTCCTCTTC	.	114.0	36.0	168.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
SARS2	54938	hgsc.bcm.edu	hg19	19	39409424	39409424	+	Silent	SNP	A	A	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	SARS2	NM_001145901	exon9	c.T795C	p.L265L	GCGGAGAAGGTCT	.	40.0	14.0	71.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
DKKL1	27120	hgsc.bcm.edu	hg19	19	49868766	49868766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	DKKL1	NM_014419	exon3	c.G184T	p.G62C	CCCCAGGGTAACC	.	35.0	11.0	55.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
CASS4	57091	hgsc.bcm.edu	hg19	20	55026927	55026927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	CASS4	NM_020356	exon5	c.G695T	p.S232I	GTTACAGCACATT	.	195.0	47.0	184.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
LSM14B	149986	hgsc.bcm.edu	hg19	20	60704972	60704972	+	Missense_Mutation	SNP	G	G	C	rs139247673	bycluster;by1000genomes;alternate_allele	TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	LSM14B	NM_144703	exon4	c.G559C	p.G187R	CTCAACGGTCGTC	.	139.0	32.0	115.0	0.0	.	62	.	.	.	alt	G|0.990;A|0.010	.	PASS	Atlas-SNP
COL6A2	1292	hgsc.bcm.edu	hg19	21	47544599	47544599	+	Missense_Mutation	SNP	G	G	T	rs147158850	bycluster;by1000genomes;alternate_allele	TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	COL6A2	NM_058175	exon22	c.G1706T	p.R569L	GCCCTCGGGGGCC	.	72.0	28.0	110.0	0.0	.	351	.	.	.	alt	G|0.999;A|0.001	.	PASS	Atlas-SNP
SHANK3	85358	hgsc.bcm.edu	hg19	22	51160753	51160753	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	SHANK3	NM_033517	exon21	c.A4450T	p.S1484C	GAGCTCAGCTCCC	.	148.0	53.0	182.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
ND1	10625	hgsc.bcm.edu	hg19	MT	3791	3791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	.	ENST00000361390	exon1	c.T485C	p.L162P	TTAACCTCTCCAC	.	51.0	48.0	8.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
APLF	200558	hgsc.bcm.edu	hg19	2	68740321	68740322	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	APLF	NM_173545	exon4	c.451_452insA	p.E151fs	.	.	127.0	35.0	113.0	0.0	.	69	.	0.275591	0	none	.	.	PASS	Atlas-Indel,Pindel
HSD17B1	3292	hgsc.bcm.edu	hg19	17	40706580	40706580	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	HSD17B1	NM_000413	exon5	c.696delG	p.Q232fs	.	.	80.0	18.0	68.0	0.0	.	24	.	0.225	0	none	.	.	PASS	Atlas-Indel,Pindel
TRPM1	4308	hgsc.bcm.edu	hg19	15	31294200	31294200	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	TRPM1	NM_001252020	exon27	c.4755delA	p.P1585fs	.	.	74.0	20.0	84.0	0.0	.	183	.	0.27027	0	none	.	.	PASS	Atlas-Indel,Pindel
TTN	7273	hgsc.bcm.edu	hg19	2	179398278	179398278	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	TTN	NM_001267550	exon358	c.103065delT	p.P34355fs	.	.	90.0	52.0	83.0	0.0	.	18412	.	0.577778	0	none	.	.	PASS	Atlas-Indel,Pindel
PPIL1	51645	hgsc.bcm.edu	hg19	6	36823708	36823708	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	PPIL1	NM_016059	exon4	c.383delT	p.I128fs	.	.	78.0	27.0	106.0	0.0	.	6	.	0.346154	0	none	.	.	PASS	Atlas-Indel,Pindel
AGO2	27161	hgsc.bcm.edu	hg19	8	141554392	141554393	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	.	NM_012154	exon14	c.1759_1760del	p.587_587del	.	.	38.0	12.0	42.0	0.0	.	.	.	0.315789	0	none	.	.	PASS	Atlas-Indel,Pindel
SPDL1	54908	hgsc.bcm.edu	hg19	5	169018070	169018071	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	.	NM_017785	exon3	c.178_179insG	p.Y60_T61delinsX	.	.	146.0	59.0	194.0	0.0	.	.	.	0.40411	0	none	.	.	PASS	Atlas-Indel,Pindel
RSF1	51773	hgsc.bcm.edu	hg19	11	77378053	77378054	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	RSF1	NM_016578	exon16	c.4235_4236insTG	p.G1412fs	.	.	103.0	30.0	76.0	0.0	.	105	.	0.291262	0	none	.	.	PASS	Atlas-Indel,Pindel
NEFH	4744	hgsc.bcm.edu	hg19	22	29885584	29885585	+	In_Frame_Ins	INS	-	-	CAAGTCCCCTGAGAAGGC	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.,1	NEFH	NM_021076	exon4	c.1955_1956insCAAGTCCCCTGAGAAGGC	p.A652delinsAKSPEKA	.	.	158.0	39.0	138.0	0.0	.	178	.	0.246835	0	none	.	.	PASS	Atlas-INDEL
KCNT2	343450	hgsc.bcm.edu	hg19	1	196303029	196303029	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	KCNT2	NM_198503	exon17	c.1946delA	p.D649fs	.	.	55.0	21.0	68.0	0.0	.	243	.	0.381818	0	none	.	.	PASS	Atlas-Indel,Pindel
CTAGE1	64693	hgsc.bcm.edu	hg19	18	19995661	19995661	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	CTAGE1	NM_172241	exon1	c.2115delT	p.S705fs	.	.	109.0	33.0	114.0	0.0	.	146	.	0.302752	0	none	.	.	PASS	Atlas-Indel,Pindel
USP14	9097	hgsc.bcm.edu	hg19	18	192871	192871	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	USP14	NM_005151	exon6	c.433delG	p.E145fs	.	.	77.0	34.0	79.0	0.0	.	41	.	0.441558	0	none	.	.	PASS	Atlas-Indel,Pindel
OBSCN	84033	hgsc.bcm.edu	hg19	1	228521014	228521017	+	Frame_Shift_Del	DEL	CAAG	CAAG	-	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	CAAG	CAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	OBSCN	NM_001271223	exon69	c.18716_18719del	p.6239_6240del	.	.	81.0	34.0	99.0	0.0	.	2142	.	0.419753	0	none	.	.	PASS	Atlas-Indel,Pindel
MAGEC1	9947	hgsc.bcm.edu	hg19	X	140993981	140994085	+	In_Frame_Del	DEL	CCCAGTCTTCTCTCCAGATTCCTGTGAGCCCCTCCTTCTCCTCCACTTTAGTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCAGAGTACTTTTGAGGGTTTTC	CCCAGTCTTCTCTCCAGATTCCTGTGAGCCCCTCCTTCTCCTCCACTTTAGTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCAGAGTACTTTTGAGGGTTTTC	-	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	CCCAGTCTTCTCTCCAGATTCCTGTGAGCCCCTCCTTCTCCTCCACTTTAGTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCAGAGTACTTTTGAGGGTTTTC	CCCAGTCTTCTCTCCAGATTCCTGTGAGCCCCTCCTTCTCCTCCACTTTAGTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCAGAGTACTTTTGAGGGTTTTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	MAGEC1	NM_005462	exon4	c.790_894del	p.264_298del	.	.	251.0	19.0	273.0	0.0	.	317	.	0.076	.	none	.	.	PASS	Pindel
CR1	1378	hgsc.bcm.edu	hg19	1	207734400	207734405	+	In_Frame_Del	DEL	TGGCTT	TGGCTT	-	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	TGGCTT	TGGCTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	CR1	NM_000651	exon21	c.3503_3508del	p.1168_1170del	.	.	119.0	20.0	174.0	0.0	.	354	.	0.168	.	none	.	.	PASS	Pindel
CR1	1378	hgsc.bcm.edu	hg19	1	207715843	207715848	+	In_Frame_Del	DEL	TGGCTT	TGGCTT	-	novel		TCGA-SX-A71V-01A-11D-A33Q-10	TCGA-SX-A71V-10A-01D-A33Q-10	TGGCTT	TGGCTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7879708e-a807-4002-9d4d-efc84d51a4e5	af4acae0-89a6-4004-ad5b-149db143f98b	.	CR1	NM_000651	exon13	c.2153_2158del	p.718_720del	.	.	140.0	16.0	194.0	0.0	.	354	.	0.114	.	none	.	.	PASS	Pindel
