Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
NRD1	4898	hgsc.bcm.edu	hg19	1	52306066	52306066	+	Missense_Mutation	SNP	T	T	A	rs72663147	bycluster	TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	NRD1,NS,other,0,1	NRD1	NM_002525	exon2	c.A462T	p.E154D	ATCATCTTCTTCT	.	149.0	12.0	199.0	1.0	.	89	.	.	.	weak	.	.	PASS	Atlas-SNP
LRPPRC	10128	hgsc.bcm.edu	hg19	2	44139609	44139609	+	Silent	SNP	T	T	C	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	LRPPRC	NM_133259	exon30	c.A3237G	p.S1079S	ATCTTCTGACATC	.	210.0	80.0	363.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
SMEK2	57223	hgsc.bcm.edu	hg19	2	55805411	55805411	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	SMEK2	NM_001122964	exon10	c.T1536A	p.H512Q	GGTAGAATGGGAA	.	119.0	55.0	189.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
DPP10	57628	hgsc.bcm.edu	hg19	2	116497451	116497451	+	Silent	SNP	G	G	A	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	DPP10	NM_001178034	exon9	c.G846A	p.K282K	AGGAAAGCAGTAT	.	87.0	7.0	175.0	0.0	.	415	.	.	.	none	.	.	PASS	Atlas-SNP
GPR148	344561	hgsc.bcm.edu	hg19	2	131487490	131487490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	GPR148	NM_207364	exon1	c.T766C	p.Y256H	CAGGGCTATTCCC	.	39.0	17.0	66.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
SGOL2	151246	hgsc.bcm.edu	hg19	2	201436485	201436485	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	SGOL2	NM_001160046	exon7	c.A1416T	p.K472N	AAAGAAAATGACC	.	87.0	46.0	130.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
UGT1A4	54657	hgsc.bcm.edu	hg19	2	234627924	234627924	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	UGT1A4	NM_007120	exon1	c.C458G	p.P153R	CAGACCCCGTTAA	.	174.0	57.0	303.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
SH3BP5	9467	hgsc.bcm.edu	hg19	3	15298489	15298489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	SH3BP5	NM_004844	exon8	c.G1021A	p.V341I	TCACAACCGCAGG	.	63.0	20.0	92.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0232	9778	hgsc.bcm.edu	hg19	4	6865878	6865878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	KIAA0232	NM_014743	exon7	c.G3769T	p.D1257Y	TATGAAGATAATC	.	91.0	34.0	141.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74277773	74277773	+	Silent	SNP	A	A	G	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	ALB	NM_000477	exon7	c.A774G	p.L258L	CAAGTTAGTGACA	.	78.0	29.0	131.0	0.0	.	132	.	.	.	none	.	.	PASS	Atlas-SNP
ITGA1	3672	hgsc.bcm.edu	hg19	5	52235508	52235508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	ITGA1	NM_181501	exon25	c.G3167A	p.R1056Q	TCAAACGAGGCAC	.	108.0	7.0	186.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
GCNT2	2651	hgsc.bcm.edu	hg19	6	10529942	10529942	+	Nonsense_Mutation	SNP	C	C	G	rs377397535	alternate_allele	TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	GCNT2	NM_145649	exon3	c.C798G	p.Y266X	GGCCTACGTGGCT	.	35.0	11.0	95.0	0.0	.	123	.	.	.	alt	.	.	PASS	Atlas-SNP
MRPS18A	55168	hgsc.bcm.edu	hg19	6	43646267	43646267	+	Silent	SNP	C	C	T	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	MRPS18A	NM_001193343	exon3	c.G240A	p.K80K	GTTATACTTGTGC	.	57.0	21.0	86.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
CFTR	1080	hgsc.bcm.edu	hg19	7	117232346	117232346	+	Silent	SNP	C	C	A	rs121908760	alternate_allele	TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	CFTR	NM_000492	exon14	c.C2125A	p.R709R	TCTATACGAAAAT	.	66.0	17.0	78.0	0.0	.	171	.	.	.	alt	.	.	PASS	Atlas-SNP
SPAG11B	10407	hgsc.bcm.edu	hg19	8	7320361	7320361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	SPAG11B_ENST00000398462,NS,carcinoma,0,3	SPAG11B	NM_016512	exon2	c.G82A	p.V28M	GGTTCACATGTCT	.	447.0	66.0	755.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
GNE	10020	hgsc.bcm.edu	hg19	9	36246171	36246171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	GNE	NM_001128227	exon3	c.T566C	p.V189A	CAGCACACATGAT	.	52.0	20.0	86.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB5	9925	hgsc.bcm.edu	hg19	9	37442187	37442187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	ZBTB5,NS,carcinoma,0,1	ZBTB5	NM_014872	exon2	c.C362A	p.T121K	GTCCTTGTCGTTA	.	45.0	17.0	75.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
COL15A1	1306	hgsc.bcm.edu	hg19	9	101806896	101806896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	COL15A1	NM_001855	exon25	c.T2621C	p.L874P	TTCCTCTGGAAAG	.	53.0	20.0	87.0	0.0	.	211	.	.	.	none	.	.	PASS	Atlas-SNP
HK1	3098	hgsc.bcm.edu	hg19	10	71160778	71160778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	HK1	NM_033498	exon21	c.G2653A	p.E885K	GTGAAGGAACTGT	.	46.0	16.0	105.0	0.0	.	170	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF641	121274	hgsc.bcm.edu	hg19	12	48736774	48736774	+	Silent	SNP	T	T	C	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	ZNF641	NM_152320	exon7	c.A1299G	p.R433R	TGTTCCTCTGTCC	.	49.0	34.0	58.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF25	115557	hgsc.bcm.edu	hg19	12	58009666	58009666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	ARHGEF25	NM_001111270	exon14	c.G1403A	p.R468H	CTTGCCGCTTTGC	.	63.0	22.0	91.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
GRIP1	23426	hgsc.bcm.edu	hg19	12	66935595	66935595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	GRIP1	NM_001178074	exon3	c.G272A	p.R91K	AGTTACCTAGCAG	.	127.0	80.0	205.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
IRF2BPL	64207	hgsc.bcm.edu	hg19	14	77494080	77494080	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	IRF2BPL	NM_024496	exon1	c.T56A	p.L19Q	CGGGGCAGGTCGC	.	38.0	18.0	60.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
GAA	2548	hgsc.bcm.edu	hg19	17	78085901	78085901	+	Splice_Site	SNP	T	T	G	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	GAA	NM_000152	exon12	c.1754+2T>G	.	CACAGGTGAGGGC	.	30.0	20.0	47.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
INO80C	125476	hgsc.bcm.edu	hg19	18	33077699	33077699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	INO80C	NM_194281	exon1	c.C140T	p.A47V	CTGGAAGCGGACG	.	47.0	16.0	97.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
CNDP2	55748	hgsc.bcm.edu	hg19	18	72185851	72185851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	CNDP2	NM_018235	exon10	c.G1186A	p.A396T	TACCTGGCTGGGA	.	47.0	18.0	92.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22941916	22941916	+	Silent	SNP	A	A	C	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	ZNF99	NM_001080409	exon4	c.T795G	p.V265V	GTTAAAAACTTTG	.	38.0	17.0	61.0	0.0	.	273	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO46	23403	hgsc.bcm.edu	hg19	19	46216657	46216657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	FBXO46	NM_001080469	exon2	c.A97G	p.K33E	ATGGCTTGAGGGC	.	29.0	11.0	42.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO46	23403	hgsc.bcm.edu	hg19	19	46216658	46216658	+	Silent	SNP	G	G	T	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	FBXO46	NM_001080469	exon2	c.C96A	p.L32L	TGGCTTGAGGGCC	.	29.0	11.0	41.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
IRF2BP1	26145	hgsc.bcm.edu	hg19	19	46387535	46387535	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	IRF2BP1	NM_015649	exon1	c.C1498G	p.P500A	ACAGGGGGGCCCC	.	42.0	13.0	67.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53565885	53565885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	HUWE1	NM_031407	exon76	c.C11789T	p.S3930F	TCAAGGGAGGAAG	.	53.0	46.0	59.0	0.0	.	724	.	.	.	none	.	.	PASS	Atlas-SNP
COX3	5742	hgsc.bcm.edu	hg19	MT	9720	9720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	.	ENST00000362079	exon1	c.T514C	p.Y172H	GGTCTCTATTTTA	.	105.0	6.0	11.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
HHIPL1	84439	hgsc.bcm.edu	hg19	14	100118913	100118913	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	HHIPL1	NM_032425	exon2	c.607delA	p.R203fs	.	.	23.0	10.0	69.0	0.0	.	86	.	0.434783	0	none	.	.	PASS	Atlas-INDEL
UNC79	57578	hgsc.bcm.edu	hg19	14	94125586	94125586	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	UNC79	NM_020818	exon40	c.6089delT	p.I2030fs	.	.	80.0	30.0	137.0	0.0	.	366	.	0.375	0	none	.	.	PASS	Atlas-Indel,Pindel
C11orf24	53838	hgsc.bcm.edu	hg19	11	68030090	68030107	+	In_Frame_Del	DEL	TGGAGGCCGCAGTCGTAA	TGGAGGCCGCAGTCGTAA	-	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	TGGAGGCCGCAGTCGTAA	TGGAGGCCGCAGTCGTAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	C11orf24,NS,carcinoma,0,1	C11orf24	NM_022338	exon4	c.357_374del	p.119_125del	.	.	63.0	15.0	92.0	0.0	.	35	.	0.238095	0	none	.	.	PASS	Atlas-INDEL
UNC79	57578	hgsc.bcm.edu	hg19	14	94060077	94060077	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-SX-A71W-01A-12D-A34Z-10	TCGA-SX-A71W-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	39d5e130-8dd3-4884-81ca-045c8ae54290	365767f7-d1f9-4779-86a3-9b5ad8bbe963	.	UNC79	NM_020818	exon23	c.2552delT	p.V851fs	.	.	207.0	87.0	335.0	0.0	.	366	.	0.42029	0	none	.	.	PASS	Atlas-Indel,Pindel
