Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
DMAP1	55929	hgsc.bcm.edu	hg19	1	44680529	44680529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	DMAP1	NM_001034023	exon4	c.G352A	p.A118T	CGTGCAGCGGAGG	.	150.0	60.0	106.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
OTUD7B	56957	hgsc.bcm.edu	hg19	1	149916007	149916007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	OTUD7B	NM_020205	exon12	c.A2281G	p.R761G	CACCCCTGTGAAG	.	60.0	27.0	37.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
HNRPLL	92906	hgsc.bcm.edu	hg19	2	38812820	38812820	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	HNRPLL	NM_138394	exon3	c.T512A	p.L171H	ATTGAGAGCAGAA	.	145.0	67.0	75.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
TTLL4	9654	hgsc.bcm.edu	hg19	2	219619110	219619110	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	TTLL4	NM_014640	exon20	c.T3598A	p.X1200K	AGCCCATAACTGG	.	93.0	36.0	81.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
IMPG2	50939	hgsc.bcm.edu	hg19	3	100964931	100964931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	IMPG2	NM_016247	exon12	c.G1258A	p.A420T	GCCATGCAGCTTG	.	146.0	6.0	63.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA16	83893	hgsc.bcm.edu	hg19	3	172835337	172835337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	SPATA16	NM_031955	exon2	c.G185T	p.R62I	TTTGTTCTTTCAA	.	132.0	46.0	102.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R2	5504	hgsc.bcm.edu	hg19	3	195250521	195250521	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	PPP1R2	NM_006241	exon4	c.G372A	p.E124E	ATCCTCCTCTCCA	.	105.0	42.0	71.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48552657	48552657	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	FRYL	NM_015030	exon38	c.G4585C	p.E1529Q	GGGATTCTAGTCT	.	51.0	19.0	28.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
CCSER1	401145	hgsc.bcm.edu	hg19	4	91321220	91321220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	FAM190A_ENST00000509176,colon,carcinoma,0,3	.	NM_001145065	exon4	c.G1543A	p.D515N	GAACTGGATGAAG	.	119.0	48.0	79.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CCSER1	401145	hgsc.bcm.edu	hg19	4	91321221	91321221	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	FAM190A_ENST00000509176,colon,carcinoma,+1,12	.	NM_001145065	exon4	c.A1544C	p.D515A	AACTGGATGAAGA	.	118.0	47.0	79.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	hg19	4	190884267	190884267	+	Missense_Mutation	SNP	G	G	A	rs373037319		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	FRG1,middle_lobe,carcinoma,0,1	FRG1	NM_004477	exon9	c.G760A	p.D254N	AAAGCCGACAGAT	.	54.0	5.0	32.0	0.0	.	76	.	.	.	weak	.	.	PASS	Atlas-SNP
C5orf55	116349	hgsc.bcm.edu	hg19	5	442810	442810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	C5orf55	NM_138464	exon1	c.G128A	p.G43E	TGATTCCCAACCT	.	103.0	41.0	56.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
COL4A3BP	10087	hgsc.bcm.edu	hg19	5	74677819	74677819	+	Silent	SNP	T	T	C	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	COL4A3BP	NM_001130105	exon16	c.A1956G	p.E652E	CCAAGTTTCAGGG	.	339.0	146.0	161.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
PHAX	51808	hgsc.bcm.edu	hg19	5	125939501	125939501	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	PHAX	NM_032177	exon2	c.G336C	p.K112N	AGGAAAGAAGATT	.	274.0	119.0	211.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
CTNNA1	1495	hgsc.bcm.edu	hg19	5	138266330	138266330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	CTNNA1	NM_001903	exon15	c.A2179G	p.T727A	GAGATGACAGACT	.	170.0	76.0	97.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
F12	2161	hgsc.bcm.edu	hg19	5	176830954	176830954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	F12	NM_000505	exon10	c.T1156C	p.Y386H	CGATGTAGGGGTG	.	135.0	54.0	75.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
SYCP2L	221711	hgsc.bcm.edu	hg19	6	10935326	10935326	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	SYCP2L	NM_001040274	exon21	c.C1719T	p.P573P	AATACCCGAGCAA	.	390.0	153.0	233.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
C6orf58	352999	hgsc.bcm.edu	hg19	6	127911437	127911437	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	C6orf58	NM_001010905	exon5	c.C880G	p.L294V	GTTCTTCTAAATA	.	36.0	13.0	34.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
CITED2	10370	hgsc.bcm.edu	hg19	6	139694378	139694378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	CITED2	NM_001168389	exon2	c.T719C	p.M240T	AAACCCATTTCTA	.	108.0	50.0	87.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2039785	2039785	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	SMARCA2	NM_139045	exon4	c.G675A	p.Q225Q	GCAGCAGCAGCAG	.	106.0	11.0	57.0	0.0	.	313	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2039809	2039809	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	SMARCA2	NM_139045	exon4	c.G699A	p.Q233Q	GCAGCAGCAGCAG	.	110.0	15.0	72.0	0.0	.	313	.	.	.	none	.	.	PASS	Atlas-SNP
UBAP2	55833	hgsc.bcm.edu	hg19	9	33944463	33944463	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	UBAP2	NM_018449	exon14	c.A1445C	p.Q482P	GGAAGCTGCAAAA	.	154.0	77.0	109.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
HNRNPH3	3189	hgsc.bcm.edu	hg19	10	70098346	70098346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	HNRNPH3	NM_012207	exon4	c.C338A	p.P113Q	CGGGACCATATGA	.	156.0	65.0	120.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
PANK1	53354	hgsc.bcm.edu	hg19	10	91359120	91359120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.,3	PANK1	NM_148977	exon3	c.A1199G	p.K400R	TACGGCTTTTTTT	.	257.0	97.0	170.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
OR8H3	390152	hgsc.bcm.edu	hg19	11	55889939	55889939	+	Silent	SNP	C	C	T	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	OR8H3	NM_001005201	exon1	c.C91T	p.L31L	TTTATGCTATTTC	.	126.0	67.0	67.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM109	79073	hgsc.bcm.edu	hg19	11	60689497	60689497	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	TMEM109	NM_024092	exon4	c.C592G	p.L198V	TACGCCCTGCTGA	.	62.0	36.0	47.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
MOGAT2	80168	hgsc.bcm.edu	hg19	11	75428970	75428970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	MOGAT2	NM_025098	exon1	c.C37T	p.R13C	TGGGAGCGCAGGC	.	106.0	45.0	71.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A13	6540	hgsc.bcm.edu	hg19	12	368943	368943	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	SLC6A13	NM_001243392	exon2	c.C276T	p.P92P	CCAGAGGGGCCGT	.	55.0	25.0	30.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM132C	92293	hgsc.bcm.edu	hg19	12	129180454	129180454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	TMEM132C	NM_001136103	exon7	c.G1735T	p.V579L	GCCACCGTGCGGG	.	53.0	15.0	56.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
KATNAL1	84056	hgsc.bcm.edu	hg19	13	30814596	30814596	+	Splice_Site	SNP	C	C	A	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	KATNAL1	NM_001014380	exon7	c.726+1G>T	.	TTCTCACCTTCCA	.	81.0	27.0	53.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	hg19	15	90340880	90340880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	ANPEP	NM_001150	exon15	c.T2083C	p.W695R	CCTCCCAGGGCAT	.	128.0	58.0	101.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	hg19	15	90349683	90349683	+	Silent	SNP	G	G	A	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	ANPEP	NM_001150	exon2	c.C132T	p.S44S	CACGGGGGAGCTG	.	107.0	42.0	79.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
NFAT5	10725	hgsc.bcm.edu	hg19	16	69687291	69687291	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	NFAT5	NM_001113178	exon5	c.C965G	p.S322X	GTGGCTCAGTGAA	.	199.0	72.0	105.0	0.0	.	184	.	.	.	none	.	.	PASS	Atlas-SNP
SYNRG	11276	hgsc.bcm.edu	hg19	17	35944776	35944776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	SYNRG	NM_001163544	exon6	c.C569T	p.A190V	TGCGATGCTGGAG	.	198.0	106.0	104.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP9-3	83900	hgsc.bcm.edu	hg19	17	39388890	39388890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	KRTAP9-3	NM_031962	exon1	c.G137A	p.C46Y	AGCCTTGCTGCCA	.	130.0	81.0	53.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	hg19	19	1056069	1056069	+	Missense_Mutation	SNP	G	G	A	rs374185879		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	ABCA7	NM_019112	exon32	c.G4243A	p.G1415R	AGATACGGAGGCT	.	55.0	22.0	47.0	0.0	.	174	.	.	.	weak	.	.	PASS	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	hg19	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879	bycluster	TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	PRKCSH,caecum,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA	.	132.0	6.0	90.0	2.0	.	55	.	.	.	weak	.	.	PASS	Atlas-SNP
NCCRP1	342897	hgsc.bcm.edu	hg19	19	39687821	39687821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	NCCRP1	NM_001001414	exon1	c.G199A	p.A67T	TCCGAGGCTCACG	.	19.0	5.0	16.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
MTMR3	8897	hgsc.bcm.edu	hg19	22	30416092	30416092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	MTMR3	NM_153050	exon17	c.A2444G	p.D815G	CAGTAGATGCAAA	.	167.0	37.0	129.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
PACRG	135138	hgsc.bcm.edu	hg19	6	163483263	163483263	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	PACRG	NM_001080379	exon3	c.372delG	p.E124fs	.	.	173.0	69.0	89.0	0.0	.	48	.	0.398844	0	none	.	.	PASS	Atlas-Indel,Pindel
KCNB1	3745	hgsc.bcm.edu	hg19	20	48098450	48098450	+	Splice_Site	DEL	C	C	-	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	KCNB1	NM_004975	exon2	c.567+2G>-	.	.	.	109.0	50.0	80.0	0.0	.	142	.	0.458716	0	none	.	.	PASS	Atlas-Indel,Pindel
KATNAL2	83473	hgsc.bcm.edu	hg19	18	44625645	44625646	+	In_Frame_Ins	INS	-	-	AGA	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	KATNAL2,colon,carcinoma,0,1	KATNAL2	NM_031303	exon13	c.1027_1028insAGA	p.E343delinsEK	.	.	79.0	35.0	77.0	0.0	.	64	.	0.443038	0	none	.	.	PASS	Atlas-Indel,Pindel
SGK223	0	hgsc.bcm.edu	hg19	8	8235005	8235005	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	.	NM_001080826	exon2	c.915delG	p.P305fs	.	.	174.0	65.0	111.0	0.0	.	.	.	0.373563	0	none	.	.	PASS	Atlas-Indel,Pindel
PEPD	5184	hgsc.bcm.edu	hg19	19	33902620	33902621	+	In_Frame_Ins	INS	-	-	CGTGTC	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	PEPD	NM_000285	exon11	c.776_777insGACACG	p.A259delinsGHA	.	.	41.0	13.0	48.0	0.0	.	48	.	0.317	.	none	.	.	PASS	Pindel
ALS2	57679	hgsc.bcm.edu	hg19	2	202622485	202622485	+	Splice_Site	DEL	A	A	-	novel		TCGA-SX-A7SU-01A-11D-A35Z-10	TCGA-SX-A7SU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06de0d9e-db97-4250-a774-fa0f4eabbe74	7d1da0d0-0c30-4440-b607-036215cc6509	.	ALS2	NM_020919	exon6	c.1114-2T>-	.	.	.	38.0	10.0	18.0	0.0	.	172	.	0.263	.	none	.	.	PASS	Pindel
