Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
FPGT-TNNI3K	100526835	hgsc.bcm.edu	hg19	1	74905231	74905231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	.	NM_001199327	exon22	c.G2239A	p.A747T	ATCAAAGCAGATG	.	95.0	36.0	92.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
HIST2H2BE	8349	hgsc.bcm.edu	hg19	1	149858172	149858172	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	HIST2H2BE	NM_003528	exon1	c.T19A	p.S7T	GAGCGGATTTTGC	.	154.0	58.0	159.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
ECM1	1893	hgsc.bcm.edu	hg19	1	150482014	150482014	+	Silent	SNP	G	G	T	rs200429908	bycluster;alternate_allele	TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	ECM1	NM_022664	exon2	c.G78T	p.T26T	CTTCACGGCTACA	.	97.0	36.0	83.0	0.0	.	96	.	.	.	alt	G|0.999;A|0.001	.	PASS	Atlas-SNP
EFNA1	1942	hgsc.bcm.edu	hg19	1	155104053	155104053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	EFNA1	NM_182685	exon2	c.T331C	p.F111L	CAGCGCTTCACAC	.	249.0	84.0	253.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
GMCL1	64395	hgsc.bcm.edu	hg19	2	70074701	70074701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	GMCL1	NM_178439	exon7	c.G785A	p.G262D	TCATTGGTTCATC	.	98.0	50.0	88.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
PTCD3	55037	hgsc.bcm.edu	hg19	2	86352186	86352186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	PTCD3	NM_017952	exon10	c.T785C	p.M262T	GCACAATGATCCG	.	109.0	36.0	88.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
MPP4	58538	hgsc.bcm.edu	hg19	2	202514863	202514863	+	Nonsense_Mutation	SNP	G	G	T	rs376163949	alternate_allele	TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	MPP4_ENST00000409474,NS,carcinoma,0,1	MPP4	NM_033066	exon19	c.C1407A	p.Y469X	CATTTCGTAACTC	.	104.0	6.0	94.0	0.0	.	93	.	.	.	alt	.	.	PASS	Atlas-SNP
LRRFIP2	9209	hgsc.bcm.edu	hg19	3	37107344	37107344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	LRRFIP2	NM_006309	exon24	c.G1656T	p.Q552H	AGCTTCCTGAGAC	.	164.0	75.0	134.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	hg19	3	38163861	38163861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	DLEC1	NM_007337	exon36	c.A5102G	p.K1701R	GGGCCAAGGCTCC	.	176.0	87.0	127.0	0.0	.	278	.	.	.	none	.	.	PASS	Atlas-SNP
XIRP1	165904	hgsc.bcm.edu	hg19	3	39229398	39229398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	XIRP1	NM_001198621	exon2	c.G1539T	p.R513S	CATCCACCTGTAG	.	107.0	29.0	59.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52439133	52439133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	BAP1	NM_004656	exon11	c.C1109A	p.P370H	TGCATGGGGGACT	.	152.0	39.0	119.0	0.0	.	371	.	.	.	none	.	.	PASS	Atlas-SNP
LRRIQ4	344657	hgsc.bcm.edu	hg19	3	169539716	169539716	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	LRRIQ4	NM_001080460	exon1	c.A7T	p.K3X	ATGTCAAAAGACA	.	433.0	237.0	354.0	1.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
LEF1	51176	hgsc.bcm.edu	hg19	4	108999439	108999439	+	Silent	SNP	C	C	T	rs375238109		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	LEF1	NM_016269	exon8	c.G945A	p.A315A	GACATTCGCTCTC	.	122.0	52.0	122.0	0.0	.	93	.	.	.	weak	.	.	PASS	Atlas-SNP
NDST4	64579	hgsc.bcm.edu	hg19	4	115997318	115997318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	NDST4	NM_022569	exon2	c.C875T	p.S292L	TTCCCTGACAAGA	.	100.0	36.0	104.0	0.0	.	193	.	.	.	none	.	.	PASS	Atlas-SNP
FAM71B	153745	hgsc.bcm.edu	hg19	5	156592638	156592638	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	FAM71B	NM_130899	exon1	c.G542C	p.S181T	CAGTAACTCTCTA	.	161.0	55.0	139.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	hg19	5	156738675	156738675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	CYFIP2	NM_001037332	exon11	c.G996T	p.W332C	CAGGTGGACGTGC	.	188.0	57.0	207.0	0.0	.	354	.	.	.	none	.	.	PASS	Atlas-SNP
LRFN2	57497	hgsc.bcm.edu	hg19	6	40399746	40399746	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	LRFN2	NM_020737	exon2	c.G1107A	p.T369T	CATGGCCGTGGCC	.	57.0	20.0	50.0	0.0	.	133	.	.	.	none	.	.	PASS	Atlas-SNP
LCA5	167691	hgsc.bcm.edu	hg19	6	80223369	80223369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	LCA5	NM_001122769	exon3	c.C280T	p.R94W	CTTTCCGAAGTGG	.	70.0	22.0	90.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
GFRA2	2675	hgsc.bcm.edu	hg19	8	21560336	21560336	+	Missense_Mutation	SNP	G	G	C	rs76990589	bycluster;alternate_allele	TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	GFRA2	NM_001495	exon7	c.C1199G	p.T400S	CAGGTGGTGATGA	.	83.0	30.0	107.0	0.0	.	23	.	.	.	alt	.	.	PASS	Atlas-SNP
NBN	4683	hgsc.bcm.edu	hg19	8	90965471	90965471	+	Splice_Site	SNP	C	C	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	NBN	NM_002485	exon12	c.1845+1G>A	.	TACTTACAGATAT	.	62.0	17.0	56.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	hg19	8	100865879	100865879	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	VPS13B	NM_017890	exon56	c.A10337G	p.E3446G	GTGTGGAGATCTG	.	168.0	50.0	158.0	0.0	.	811	.	.	.	none	.	.	PASS	Atlas-SNP
C9orf66	157983	hgsc.bcm.edu	hg19	9	214701	214701	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	C9orf66	NM_152569	exon1	c.C696A	p.Y232X	GCCCCAGTATCGG	.	100.0	41.0	96.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
DMRT3	58524	hgsc.bcm.edu	hg19	9	990923	990923	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	DMRT3	NM_021240	exon2	c.C1337G	p.S446X	TTGTGTCAAAGCA	.	99.0	35.0	108.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
KCNV2	169522	hgsc.bcm.edu	hg19	9	2718860	2718860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	KCNV2	NM_133497	exon1	c.A1121G	p.Q374R	TGGGTCAGGTGTT	.	61.0	23.0	55.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
IFNK	56832	hgsc.bcm.edu	hg19	9	27524419	27524419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	IFNK	NM_020124	exon1	c.G85T	p.D29Y	TCCCTGGACTGTA	.	153.0	60.0	133.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
NUDT2	318	hgsc.bcm.edu	hg19	9	34343386	34343386	+	Missense_Mutation	SNP	T	T	C	rs368502630		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	NUDT2	NM_147173	exon4	c.T392C	p.M131T	AGGAGATGAAGGC	.	106.0	25.0	98.0	0.0	.	7	.	.	.	weak	.	.	PASS	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	hg19	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	GNAQ,NS,carcinoma,0,2	GNAQ	NM_002072	exon2	c.A286T	p.T96S	TGAGTGTGTCCAT	.	49.0	5.0	46.0	0.0	.	384	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84607291	84607291	+	Missense_Mutation	SNP	T	T	G	rs201182137	bycluster	TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	FAM75D4,NS,carcinoma,0,2	.	NM_001001670	exon4	c.T1906G	p.L636V	GAAAGTTTGTGGG	.	118.0	6.0	128.0	1.0	.	.	.	.	.	weak	.	.	PASS	Atlas-SNP
HABP4	22927	hgsc.bcm.edu	hg19	9	99246828	99246828	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	HABP4	NM_014282	exon6	c.A912G	p.R304R	GACCAGACCAAAG	.	327.0	109.0	316.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
TNC	3371	hgsc.bcm.edu	hg19	9	117803252	117803252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	TNC	NM_002160	exon19	c.A5360G	p.E1787G	TCACTTTCCTCAA	.	140.0	42.0	114.0	0.0	.	282	.	.	.	none	.	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17107509	17107509	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	CUBN	NM_001081	exon22	c.C3137G	p.T1046R	TTACCTGTTGCTG	.	104.0	38.0	117.0	0.0	.	515	.	.	.	none	.	.	PASS	Atlas-SNP
ABCC2	1244	hgsc.bcm.edu	hg19	10	101605502	101605502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	ABCC2	NM_000392	exon29	c.T4109C	p.L1370P	TTGGGCTCCACGA	.	127.0	36.0	107.0	0.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
CPXM2	119587	hgsc.bcm.edu	hg19	10	125521473	125521473	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	CPXM2,colon,carcinoma,-2,1	CPXM2	NM_198148	exon11	c.C1692T	p.D564D	CCGGGCGTCTGTC	.	65.0	22.0	72.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
RNF17	56163	hgsc.bcm.edu	hg19	13	25378553	25378553	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	RNF17	NM_001184993	exon15	c.T2077A	p.F693I	GGAGATTTCTATC	.	92.0	34.0	99.0	0.0	.	259	.	.	.	none	.	.	PASS	Atlas-SNP
LMO7	4008	hgsc.bcm.edu	hg19	13	76427487	76427487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	LMO7	NM_015842	exon25	c.C3925T	p.P1309S	CATTCCCCTTCAG	.	77.0	26.0	98.0	0.0	.	334	.	.	.	none	.	.	PASS	Atlas-SNP
SIPA1L1	26037	hgsc.bcm.edu	hg19	14	72196928	72196928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	SIPA1L1	NM_015556	exon18	c.G4834T	p.D1612Y	CCCAACGACGTCC	.	121.0	43.0	132.0	0.0	.	219	.	.	.	none	.	.	PASS	Atlas-SNP
ABCC1	4363	hgsc.bcm.edu	hg19	16	16215909	16215909	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	ABCC1	NM_004996	exon24	c.C3468T	p.N1156N	TTTCAACGAGACC	.	189.0	102.0	148.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
SIAH1	6477	hgsc.bcm.edu	hg19	16	48395959	48395959	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	SIAH1	NM_001006610	exon2	c.C474T	p.S158S	CGGACAGGAATAA	.	140.0	34.0	125.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
SLC16A13	201232	hgsc.bcm.edu	hg19	17	6941759	6941759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	SLC16A13	NM_201566	exon3	c.T632C	p.L211P	CTCTCCTCCATCA	.	111.0	63.0	79.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
MYH13	8735	hgsc.bcm.edu	hg19	17	10222337	10222337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	MYH13	NM_003802	exon27	c.A3508G	p.K1170E	CCCTCTTCTTGTT	.	211.0	115.0	118.0	0.0	.	533	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11845791	11845791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	DNAH9	NM_001372	exon67	c.C12832T	p.L4278F	CTGGAGCTCGGCT	.	109.0	36.0	99.0	0.0	.	695	.	.	.	none	.	.	PASS	Atlas-SNP
SMG8	55181	hgsc.bcm.edu	hg19	17	57289014	57289014	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	SMG8	NM_018149	exon1	c.G1602A	p.V534V	TCGAGTGTACAGT	.	228.0	117.0	152.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
ALPK2	115701	hgsc.bcm.edu	hg19	18	56246259	56246259	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	ALPK2	NM_052947	exon4	c.T1749C	p.T583T	GTGAGAAGTCTCT	.	139.0	47.0	135.0	0.0	.	487	.	.	.	none	.	.	PASS	Atlas-SNP
ALPK2	115701	hgsc.bcm.edu	hg19	18	56246453	56246453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	ALPK2	NM_052947	exon4	c.A1555G	p.R519G	CCACTCTCTTGTC	.	82.0	22.0	97.0	0.0	.	487	.	.	.	none	.	.	PASS	Atlas-SNP
ODF3L2	284451	hgsc.bcm.edu	hg19	19	464231	464231	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	ODF3L2	NM_182577	exon4	c.T483C	p.P161P	GGCATTAGGGGCA	.	84.0	18.0	87.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
UBXN6	80700	hgsc.bcm.edu	hg19	19	4446696	4446696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	UBXN6	NM_025241	exon8	c.G721A	p.V241M	TCAGCACGTAGAA	.	114.0	46.0	108.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11113759	11113759	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	SMARCA4	NM_003072	exon12	c.G1867T	p.E623X	CACGTGGAGAGTG	.	90.0	38.0	111.0	0.0	.	502	.	.	.	none	.	.	PASS	Atlas-SNP
ELAVL3	1995	hgsc.bcm.edu	hg19	19	11577519	11577519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	ELAVL3	NM_032281	exon2	c.T133C	p.Y45H	GCAGGTAGTTGAC	.	102.0	32.0	129.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB32	27033	hgsc.bcm.edu	hg19	19	36205913	36205913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	ZBTB32	NM_014383	exon2	c.G385A	p.E129K	CATCAGGAGGAGC	.	173.0	17.0	147.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R15A	23645	hgsc.bcm.edu	hg19	19	49376934	49376934	+	Silent	SNP	A	A	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	PPP1R15A	NM_014330	exon2	c.A444T	p.I148I	TCTGATAAGGACA	.	136.0	48.0	112.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
POFUT1	23509	hgsc.bcm.edu	hg19	20	30803187	30803187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	POFUT1	NM_172236	exon3	c.A362G	p.K121R	CTGAGAAGCGGGT	.	141.0	57.0	135.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	hg19	22	29885848	29885848	+	Missense_Mutation	SNP	T	T	A	rs464517	byhapmap	TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	NEFH	NM_021076	exon4	c.T2219A	p.V740E	CCCCAGTGAAGGA	.	279.0	46.0	193.0	0.0	.	178	.	.	.	weak	T|1.000;|0.000	.	PASS	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41542756	41542756	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	EP300	NM_001429	exon11	c.T2067C	p.P689P	TCTACCTGACCCA	.	81.0	27.0	64.0	0.0	.	367	.	.	.	none	.	.	PASS	Atlas-SNP
USP11	8237	hgsc.bcm.edu	hg19	X	47103934	47103934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	USP11	NM_004651	exon14	c.G1957A	p.D653N	GAGGACGATGGGG	.	103.0	71.0	109.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
DGKQ	1609	hgsc.bcm.edu	hg19	4	959714	959715	+	Splice_Site	INS	-	-	C	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	DGKQ	NM_001347	exon14	c.1579+2->G	.	.	.	123.0	45.0	150.0	0.0	.	29	.	0.365854	0	none	.	.	PASS	Atlas-Indel,Pindel
NHLRC2	374354	hgsc.bcm.edu	hg19	10	115636691	115636691	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	NHLRC2,NS,carcinoma,0,1	NHLRC2	NM_198514	exon3	c.742delA	p.I248fs	.	.	62.0	16.0	63.0	0.0	.	56	.	0.258065	0	none	.	.	PASS	Atlas-Indel,Pindel
C16orf86	388284	hgsc.bcm.edu	hg19	16	67702481	67702482	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	C16orf86	NM_001012984	exon4	c.932_933insT	p.P311fs	.	.	114.0	57.0	80.0	0.0	.	20	.	0.5	0	none	.	.	PASS	Atlas-Indel,Pindel
TIGD6	81789	hgsc.bcm.edu	hg19	5	149375126	149375127	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	TIGD6	NM_001243253	exon2	c.786_787insA	p.N262fs	.	.	166.0	59.0	164.0	0.0	.	29	.	0.355422	0	none	.	.	PASS	Atlas-Indel,Pindel
DPCD	25911	hgsc.bcm.edu	hg19	10	103360511	103360512	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	DPCD	NM_015448	exon3	c.162_163insA	p.V54fs	.	.	103.0	30.0	99.0	0.0	.	15	.	0.291262	0	none	.	.	PASS	Atlas-Indel,Pindel
NEFH	4744	hgsc.bcm.edu	hg19	22	29885853	29885858	+	In_Frame_Del	DEL	GAAGAA	GAAGAA	-	rs377642315		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	GAAGAA	GAAGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	NEFH	NM_021076	exon4	c.2223_2228del	p.741_743del	.	.	290.0	20.0	326.0	0.0	.	178	.	0.0689655	0	weak	.	.	PASS	Atlas-INDEL
NAT9	26151	hgsc.bcm.edu	hg19	17	72767943	72767946	+	Frame_Shift_Del	DEL	ACTC	ACTC	-	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	ACTC	ACTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	NAT9	NM_015654	exon7	c.542_545del	p.181_182del	.	.	115.0	56.0	78.0	0.0	.	16	.	0.486957	0	none	.	.	PASS	Atlas-Indel,Pindel
NRDE2	55051	hgsc.bcm.edu	hg19	14	90769166	90769166	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	.	NM_017970	exon6	c.1310delT	p.I437fs	.	.	99.0	32.0	88.0	0.0	.	.	.	0.323232	0	none	.	.	PASS	Atlas-Indel,Pindel
ANK1	286	hgsc.bcm.edu	hg19	8	41551435	41551438	+	Frame_Shift_Del	DEL	GCGC	GCGC	-	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	GCGC	GCGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	ANK1	NM_001142446	exon30	c.3634_3637del	p.1212_1213del	.	.	251.0	81.0	216.0	0.0	.	497	.	0.322709	0	none	.	.	PASS	Atlas-Indel,Pindel
LDLR	3949	hgsc.bcm.edu	hg19	19	11217362	11217363	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	LDLR	NM_001195798	exon5	c.815_816del	p.272_272del	.	.	120.0	48.0	148.0	0.0	.	72	.	0.4	0	none	.	.	PASS	Atlas-Indel,Pindel
ENTPD4	9583	hgsc.bcm.edu	hg19	8	23306313	23306313	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	ENTPD4	NM_004901	exon3	c.149delC	p.S50fs	.	.	116.0	41.0	119.0	0.0	.	56	.	0.353448	0	none	.	.	PASS	Atlas-Indel,Pindel
NAALADL2	254827	hgsc.bcm.edu	hg19	3	175184939	175184939	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	NAALADL2	NM_207015	exon8	c.1499delC	p.A500fs	.	.	190.0	71.0	162.0	0.0	.	86	.	0.374	.	none	.	.	PASS	Pindel
DR1	1810	hgsc.bcm.edu	hg19	1	93812241	93812241	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UZ-A9PK-01A-11D-A382-10	TCGA-UZ-A9PK-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9cb79cdb-d48d-4fd8-bdce-1f969be4a55f	36e67294-52d8-43b6-a9c0-0ed08f740cb3	.	DR1	NM_001938	exon1	c.38delT	p.I13fs	.	.	110.0	30.0	137.0	0.0	.	10	.	0.273	.	none	.	.	PASS	Pindel
