Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
COL11A1	1301	hgsc.bcm.edu	hg19	1	103470193	103470193	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	COL11A1	NM_080629	exon19	c.C1906G	p.P636A	GACCTGGAGGACC	.	504.0	112.0	501.0	0.0	.	972	.	.	.	none	.	.	PASS	Atlas-SNP
NPR1	4881	hgsc.bcm.edu	hg19	1	153651789	153651789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	NPR1	NM_000906	exon1	c.C205T	p.R69C	AAGGCGCGCCCCG	.	48.0	12.0	60.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
IQGAP3	128239	hgsc.bcm.edu	hg19	1	156524143	156524143	+	Silent	SNP	G	G	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	IQGAP3	NM_178229	exon13	c.C1332A	p.L444L	AGCTGAGAGCATC	.	160.0	24.0	177.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	hg19	1	201030418	201030418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	CACNA1S	NM_000069	exon25	c.A3232C	p.N1078H	CACAGTTCTTGTA	.	76.0	14.0	102.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
NVL	4931	hgsc.bcm.edu	hg19	1	224424263	224424263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	NVL	NM_002533	exon20	c.G2311T	p.D771Y	CTGCATCCAGTGG	.	169.0	51.0	191.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125405388	125405388	+	Missense_Mutation	SNP	C	C	T	rs200795882	bycluster	TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	CNTNAP5,caecum,carcinoma,0,2	CNTNAP5	NM_130773	exon13	c.C1927T	p.R643W	CGAGTGCGGGGCG	.	273.0	72.0	297.0	0.0	.	405	.	.	.	weak	.	.	PASS	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141598582	141598582	+	Silent	SNP	C	C	T	rs373983727		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	LRP1B	NM_018557	exon30	c.G5019A	p.T1673T	AATTTGCGTTTCA	.	86.0	13.0	109.0	0.0	.	1315	.	.	.	weak	.	.	PASS	Atlas-SNP
ANKRD44	91526	hgsc.bcm.edu	hg19	2	197870520	197870520	+	Missense_Mutation	SNP	C	C	T	rs150303870	bycluster	TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	ANKRD44	NM_001195144	exon21	c.G2245A	p.A749T	ACGTGGCGTGGCC	.	160.0	40.0	183.0	0.0	.	281	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233651983	233651983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	GIGYF2	NM_001103147	exon11	c.G722T	p.G241V	ATGGAGGTTGGCG	.	123.0	37.0	136.0	0.0	.	288	.	.	.	none	.	.	PASS	Atlas-SNP
UGT1A10	54575	hgsc.bcm.edu	hg19	2	234545301	234545301	+	Missense_Mutation	SNP	G	G	A	rs371430642	alternate_allele	TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	UGT1A10	NM_019075	exon1	c.G133A	p.V45M	TCGGTGGTGGAGA	.	77.0	22.0	115.0	0.0	.	71	.	.	.	alt	.	.	PASS	Atlas-SNP
C4orf3	401152	hgsc.bcm.edu	hg19	4	120221731	120221731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	C4orf3	NM_001170330	exon2	c.A359G	p.H120R	CGAAAATGCTTAA	.	53.0	8.0	69.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
NNT	23530	hgsc.bcm.edu	hg19	5	43624161	43624161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	NNT	NM_182977	exon6	c.G715A	p.G239R	GTTGCTGGGCTTG	.	95.0	22.0	123.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
HNRNPA0	10949	hgsc.bcm.edu	hg19	5	137088931	137088931	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	HNRNPA0,colon,carcinoma,0,1	HNRNPA0	NM_006805	exon1	c.C825T	p.G275G	TCCACCGCCGCCG	.	80.0	4.0	97.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHB15	56121	hgsc.bcm.edu	hg19	5	140626523	140626523	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	PCDHB15	NM_018935	exon1	c.C1377T	p.F459F	CCTGTTCGTCCGC	.	91.0	19.0	121.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
C5orf45	51149	hgsc.bcm.edu	hg19	5	179267940	179267940	+	Missense_Mutation	SNP	C	C	T	rs112467347	bycluster	TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	C5orf45,NS,carcinoma,0,1	C5orf45	NM_016175	exon6	c.G469A	p.V157I	GCTGGACGGTGCT	.	76.0	20.0	84.0	0.0	.	23	.	.	.	weak	C|0.500;T|0.500	0.500	PASS	Atlas-SNP
HIVEP1	3096	hgsc.bcm.edu	hg19	6	12163682	12163682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	HIVEP1	NM_002114	exon9	c.G7145A	p.S2382N	TGTTTAGCCACCT	.	77.0	10.0	93.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
DAXX	1616	hgsc.bcm.edu	hg19	6	33289303	33289303	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	DAXX	NM_001141970	exon3	c.G285A	p.E95E	GACCACCTCAGGG	.	112.0	24.0	109.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101109798	101109798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	ASCC3	NM_006828	exon16	c.G2587A	p.E863K	TTCCTTCCCCAAA	.	102.0	21.0	106.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	hg19	7	94041426	94041426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	COL1A2	NM_000089	exon24	c.G1397T	p.G466V	AAGAAGGTCCTGT	.	165.0	32.0	135.0	0.0	.	240	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM229A	730130	hgsc.bcm.edu	hg19	7	123672479	123672479	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	TMEM229A	NM_001136002	exon1	c.G579A	p.Q193Q	CTGCTGCTGCTGT	.	60.0	5.0	55.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
ST18	9705	hgsc.bcm.edu	hg19	8	53025847	53025847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	ST18	NM_014682	exon26	c.A3055G	p.M1019V	TGTACATATCTGT	.	80.0	16.0	130.0	0.0	.	212	.	.	.	none	.	.	PASS	Atlas-SNP
TOPORS	10210	hgsc.bcm.edu	hg19	9	32542179	32542179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	TOPORS	NM_005802	exon3	c.A2344G	p.T782A	TCCCGGTAGATGC	.	134.0	24.0	166.0	0.0	.	127	.	.	.	none	.	.	PASS	Atlas-SNP
SPIN1	10927	hgsc.bcm.edu	hg19	9	91041456	91041456	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	SPIN1	NM_006717	exon2	c.T2A	p.M1K	GATGAATGAAGAC	.	460.0	120.0	504.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
CERCAM	51148	hgsc.bcm.edu	hg19	9	131183331	131183331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	CERCAM	NM_016174	exon1	c.C175T	p.P59S	GACTACCCCCGGG	.	34.0	9.0	83.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
PDHX	8050	hgsc.bcm.edu	hg19	11	35006233	35006233	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	PDHX	NM_003477	exon9	c.T1140C	p.D380D	AAAAGATGCTGCT	.	88.0	18.0	145.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
GLYAT	10249	hgsc.bcm.edu	hg19	11	58477502	58477502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	GLYAT	NM_201648	exon6	c.C628A	p.L210M	GCCCCAGGAGACA	.	118.0	21.0	115.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
GPR137	56834	hgsc.bcm.edu	hg19	11	64056714	64056714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	GPR137	NM_001170726	exon9	c.C1305A	p.H435Q	CCCTCACCCTAGG	.	157.0	13.0	123.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
TWF1	5756	hgsc.bcm.edu	hg19	12	44198327	44198327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	TWF1,NS,carcinoma,0,1	TWF1	NM_002822	exon2	c.A74G	p.Y25C	AGTCTGTACTTTC	.	461.0	106.0	501.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
HOXC6	3223	hgsc.bcm.edu	hg19	12	54422350	54422350	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	HOXC6	NM_004503	exon1	c.C45T	p.A15A	CCTCGCCGGGGGC	.	168.0	43.0	164.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
ERBB3	2065	hgsc.bcm.edu	hg19	12	56495550	56495550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	ERBB3	NM_001982	exon28	c.C3740T	p.P1247L	CTGTACCCATCAT	.	99.0	21.0	100.0	0.0	.	350	.	.	.	none	.	.	PASS	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	hg19	12	104056744	104056744	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	STAB2,NS,carcinoma,0,1	STAB2	NM_017564	exon18	c.C1990T	p.R664X	CCCCATCGATGTG	.	153.0	51.0	149.0	1.0	.	370	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF770	54989	hgsc.bcm.edu	hg19	15	35275396	35275396	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	ZNF770	NM_014106	exon3	c.T240C	p.P80P	TTTAAAAGGCAGA	.	77.0	21.0	65.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
SH3GL3	6457	hgsc.bcm.edu	hg19	15	84228033	84228033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	SH3GL3	NM_003027	exon2	c.A74C	p.E25A	GTGCTGAAGGAAC	.	325.0	65.0	307.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	hg19	15	87089231	87089231	+	Splice_Site	SNP	A	A	G	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	AGBL1	NM_152336	exon19	c.2548-2A>G	.	TATTGTAGGTTTT	.	97.0	21.0	99.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
RHBDL1	9028	hgsc.bcm.edu	hg19	16	727363	727363	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	RHBDL1	NM_003961	exon4	c.G858A	p.L286L	CAGCCTGCTCTAC	.	73.0	19.0	54.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
DCTPP1	79077	hgsc.bcm.edu	hg19	16	30435726	30435726	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	DCTPP1	NM_024096	exon3	c.T341A	p.L114Q	AGCGGCAGATCCA	.	66.0	19.0	73.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
NFATC3	4775	hgsc.bcm.edu	hg19	16	68248266	68248266	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	NFATC3	NM_004555	exon10	c.A3141G	p.S1047S	GCCATCAGGTTCA	.	89.0	22.0	117.0	0.0	.	190	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A11	8402	hgsc.bcm.edu	hg19	17	4842400	4842400	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	SLC25A11	NM_003562	exon2	c.T203A	p.L68H	CTGGTGAGGGCAT	.	92.0	17.0	111.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
TMUB2	79089	hgsc.bcm.edu	hg19	17	42267972	42267972	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	TMUB2	NM_001076674	exon4	c.T706A	p.C236S	GACAACTGTGTGA	.	100.0	25.0	89.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
TNRC6C	57690	hgsc.bcm.edu	hg19	17	76089791	76089791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	TNRC6C	NM_018996	exon17	c.C4253G	p.P1418R	CTGGGCCTACCAT	.	103.0	31.0	89.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
SETBP1	26040	hgsc.bcm.edu	hg19	18	42529882	42529882	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	SETBP1	NM_015559	exon4	c.T577A	p.Y193N	CTCCATTATGACA	.	75.0	19.0	77.0	0.0	.	577	.	.	.	none	.	.	PASS	Atlas-SNP
TMX3	54495	hgsc.bcm.edu	hg19	18	66365251	66365251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	TMX3	NM_019022	exon7	c.T410C	p.L137P	CTTGGAAGTGGCC	.	57.0	14.0	55.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
MFSD12	126321	hgsc.bcm.edu	hg19	19	3544832	3544832	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	MFSD12	NM_001042680	exon9	c.G1395A	p.L465L	CCACAGCAGGAGG	.	34.0	19.0	66.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
BRD4	23476	hgsc.bcm.edu	hg19	19	15350822	15350822	+	Missense_Mutation	SNP	C	C	T	rs200902225		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	BRD4	NM_058243	exon15	c.G3181A	p.E1061K	GGGCTTCGCGGAG	.	45.0	17.0	63.0	0.0	.	172	.	.	.	weak	.	.	PASS	Atlas-SNP
AKT2	208	hgsc.bcm.edu	hg19	19	40743897	40743897	+	Missense_Mutation	SNP	G	G	T	rs150206349	alternate_allele	TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	AKT2	NM_001626	exon9	c.C810A	p.D270E	TACCACGTCCCGC	.	48.0	13.0	75.0	0.0	.	53	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
PRR12	57479	hgsc.bcm.edu	hg19	19	50104787	50104787	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	PRR12	NM_020719	exon6	c.C4385G	p.P1462R	CTCCACCTCCTGC	.	76.0	17.0	126.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
TNNT1	7138	hgsc.bcm.edu	hg19	19	55656921	55656921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	TNNT1,NS,carcinoma,0,2	TNNT1	NM_001126132	exon6	c.C119A	p.P40H	GGTTTGGGGCGTT	.	70.0	3.0	106.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
RPL28	6158	hgsc.bcm.edu	hg19	19	55897936	55897936	+	Splice_Site	SNP	A	A	G	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	RPL28	NM_001136137	exon3	c.82-2A>G	.	CTTCCCAGGAGCC	.	85.0	23.0	137.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
OGFR	11054	hgsc.bcm.edu	hg19	20	61443936	61443936	+	Silent	SNP	C	C	A	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	OGFR	NM_007346	exon7	c.C969A	p.A323A	CGAGGCCAGCACC	.	177.0	35.0	215.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP10-8	386681	hgsc.bcm.edu	hg19	21	46032797	46032797	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	KRTAP10-8	NM_198695	exon1	c.A780T	p.X260C	CTGCTGAGGCCTC	.	24.0	11.0	48.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
NLGN4X	57502	hgsc.bcm.edu	hg19	X	5811459	5811459	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	NLGN4X	NM_181332	exon6	c.A1850C	p.D617A	GTCATGTCTGGTG	.	216.0	95.0	251.0	1.0	.	191	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R3F	89801	hgsc.bcm.edu	hg19	X	49143255	49143255	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	PPP1R3F	NM_033215	exon4	c.G2103A	p.G701G	GCAGGGGCAAAAT	.	98.0	52.0	102.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
ND1	10625	hgsc.bcm.edu	hg19	MT	4136	4136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	.	ENST00000361390	exon1	c.A830G	p.Y277C	CAGCATACCCCCG	.	83.0	5.0	25.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ATP6	0	hgsc.bcm.edu	hg19	MT	8760	8760	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	.	ENST00000361899	exon1	c.T234C	p.F78F	CATTTTTATTGCC	.	92.0	5.0	30.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	10993	10993	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	.	ENST00000361381	exon1	c.G234A	p.M78M	AATCATGGCAAGC	.	105.0	14.0	29.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SLC46A1	113235	hgsc.bcm.edu	hg19	17	26729265	26729266	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	SLC46A1	NM_080669	exon3	c.1156_1157del	p.386_386del	.	.	87.0	15.0	102.0	0.0	.	17	.	0.172414	0	none	.	.	PASS	Atlas-Indel,Pindel
AGK	55750	hgsc.bcm.edu	hg19	7	141352709	141352709	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	AGK,NS,carcinoma,0,1	AGK	NM_018238	exon16	c.1253delC	p.T418fs	.	.	67.0	14.0	74.0	0.0	.	43	.	0.208955	0	none	.	.	PASS	Atlas-Indel,Pindel
FAM171A2	284069	hgsc.bcm.edu	hg19	17	42437453	42437453	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	FAM171A2	NM_198475	exon2	c.167delT	p.L56fs	.	.	122.0	33.0	161.0	0.0	.	13	.	0.270492	0	none	.	.	PASS	Atlas-Indel,Pindel
CAMK2N2	94032	hgsc.bcm.edu	hg19	3	183979036	183979036	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	CAMK2N2	NM_033259	exon1	c.39delC	p.G13fs	.	.	105.0	40.0	115.0	0.0	.	2	.	0.380952	0	none	.	.	PASS	Atlas-Indel,Pindel
TRIM13	10206	hgsc.bcm.edu	hg19	13	50589218	50589250	+	RNA	DEL	AAAAAAAAAAAAAATATATATATATATATATAT	AAAAAAAAAAAAAATATATATATATATATATAT	-	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	AAAAAAAAAAAAAATATATATATATATATATAT	AAAAAAAAAAAAAATATATATATATATATATAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	TRIM13	.	.	.	.	.	.	22.0	10.0	20.0	0.0	.	30	.	0.454545	0	none	.	.	PASS	Atlas-INDEL
B4GALT2	8704	hgsc.bcm.edu	hg19	1	44450687	44450687	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	B4GALT2_ENST00000309519,NS,carcinoma,0,2	B4GALT2	NM_030587	exon4	c.786delA	p.Q262fs	.	.	46.0	11.0	65.0	0.0	.	35	.	0.23913	0	none	.	.	PASS	Atlas-INDEL
SPTBN5	51332	hgsc.bcm.edu	hg19	15	42148681	42148682	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	SPTBN5	NM_016642	exon53	c.8819_8820insC	p.Q2940fs	.	.	73.0	16.0	80.0	0.0	.	171	.	0.219178	0	none	.	.	PASS	Atlas-Indel,Pindel
RELA	5970	hgsc.bcm.edu	hg19	11	65422254	65422277	+	In_Frame_Del	DEL	AGGGCCTGGGGCTAGGACTGGGAC	AGGGCCTGGGGCTAGGACTGGGAC	-	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	AGGGCCTGGGGCTAGGACTGGGAC	AGGGCCTGGGGCTAGGACTGGGAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	RELA	NM_021975	exon11	c.1229_1252del	p.410_418del	.	.	110.0	17.0	146.0	0.0	.	44	.	0.154545	0	none	.	.	PASS	Atlas-Indel,Pindel
TOMM40L	84134	hgsc.bcm.edu	hg19	1	161198533	161198536	+	Frame_Shift_Del	DEL	ACAC	ACAC	-	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	ACAC	ACAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	TOMM40L	NM_032174	exon9	c.712_715del	p.238_239del	.	.	109.0	26.0	144.0	0.0	.	19	.	0.238532	0	none	.	.	PASS	Atlas-Indel,Pindel
DNAH14	127602	hgsc.bcm.edu	hg19	1	225267076	225267077	+	Frame_Shift_Ins	INS	-	-	ATTTCAGAAGAGCAAATTGCCATATTCCAAGTTCTTCTTCTTAAGTTTAGTCA	novel		TCGA-UZ-A9PN-01A-11D-A382-10	TCGA-UZ-A9PN-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	206e9cb3-201a-42f0-9d9e-4477dfe96585	9d87e73d-61d7-487c-9e1b-4dbc1285612b	.	DNAH14	NM_001373	exon18	c.2592_2593insATTTCAGAAGAGCAAATTGCCATATTCCAAGTTCTTCTTCTTAAGTTTAGTCA	p.H864fs	.	.	441.0	29.0	422.0	0.0	.	300	.	0.066	.	none	.	.	PASS	Pindel
