Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PABPC4	8761	hgsc.bcm.edu	hg19	1	40031014	40031014	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	PABPC4	NM_001135653	exon8	c.T1009G	p.F337V	AGACGAAGCCAAA	.	59.0	19.0	55.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A9	6536	hgsc.bcm.edu	hg19	1	44475672	44475672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	SLC6A9	NM_201649	exon4	c.G503A	p.C168Y	CCCAGGCACCCCT	.	212.0	54.0	193.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
CYP4A11	1579	hgsc.bcm.edu	hg19	1	47403742	47403742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	CYP4A11	NM_000778	exon2	c.A263G	p.H88R	AGCCAATGAGGAC	.	122.0	40.0	132.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
MYSM1	114803	hgsc.bcm.edu	hg19	1	59127169	59127169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	MYSM1	NM_001085487	exon18	c.T2179C	p.F727L	CTTCAAATTTGTA	.	58.0	15.0	67.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC18	343099	hgsc.bcm.edu	hg19	1	93671122	93671122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	CCDC18	NM_206886	exon8	c.A851G	p.N284S	AAGAAAATAAAAG	.	334.0	95.0	351.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
OLFML2B	25903	hgsc.bcm.edu	hg19	1	161989728	161989728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	OLFML2B	NM_015441	exon2	c.C419A	p.A140E	CTGTCTGCCTCCC	.	64.0	13.0	68.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
DYRK3	8444	hgsc.bcm.edu	hg19	1	206821237	206821237	+	Silent	SNP	C	C	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	DYRK3_ENST00000367109,NS,carcinoma,0,3	DYRK3	NM_003582	exon3	c.C694A	p.R232R	AAACTTCGACAGT	.	152.0	42.0	138.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
IHH	3549	hgsc.bcm.edu	hg19	2	219920563	219920563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	IHH	NM_002181	exon3	c.G602T	p.G201V	CAGCCGCCCGTCT	.	37.0	13.0	44.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
ATG4B	23192	hgsc.bcm.edu	hg19	2	242611647	242611647	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	ATG4B	NM_013325	exon13	c.G1150T	p.E384X	GACTCAGAAGATG	.	89.0	20.0	73.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
FBLN2	2199	hgsc.bcm.edu	hg19	3	13672240	13672240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	FBLN2	NM_001004019	exon15	c.G3010A	p.A1004T	GAGTGTGCCAACA	.	109.0	25.0	111.0	0.0	.	137	.	.	.	none	.	.	PASS	Atlas-SNP
CMC1	152100	hgsc.bcm.edu	hg19	3	28361046	28361046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	CMC1	NM_182523	exon4	c.A247G	p.K83E	TACCTGAAGGAAA	.	356.0	106.0	405.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
C3orf67	200844	hgsc.bcm.edu	hg19	3	58817468	58817468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	C3orf67	NM_198463	exon13	c.G1366A	p.V456I	TGCTGACATTACA	.	147.0	43.0	151.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
CASR	846	hgsc.bcm.edu	hg19	3	121976017	121976017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	CASR,colon,carcinoma,0,2	CASR	NM_001178065	exon3	c.C275A	p.T92K	ACTTGACGCTGGG	.	134.0	48.0	146.0	0.0	.	190	.	.	.	none	.	.	PASS	Atlas-SNP
MAGEF1	64110	hgsc.bcm.edu	hg19	3	184428718	184428718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	MAGEF1	NM_022149	exon1	c.G892T	p.A298S	CACTGGCCCTGGC	.	72.0	23.0	65.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
DGKQ	1609	hgsc.bcm.edu	hg19	4	960305	960305	+	Silent	SNP	C	C	T	rs373354724		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	DGKQ	NM_001347	exon12	c.G1377A	p.T459T	CAGCATCGTCCGC	.	103.0	23.0	95.0	0.0	.	29	.	.	.	weak	.	.	PASS	Atlas-SNP
HGFAC	3083	hgsc.bcm.edu	hg19	4	3443797	3443797	+	Silent	SNP	C	C	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	HGFAC,NS,carcinoma,0,2	HGFAC	NM_001528	exon1	c.C69G	p.L23L	CCTCCTCCTGCTG	.	52.0	6.0	57.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
SORCS2	57537	hgsc.bcm.edu	hg19	4	7691237	7691237	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	SORCS2	NM_020777	exon11	c.C1513G	p.L505V	CTGCACCTGCGCT	.	26.0	11.0	33.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13603230	13603230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	.	NM_148894	exon10	c.A5294G	p.N1765S	GCATCATTATCTC	.	61.0	17.0	77.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
STAP1	26228	hgsc.bcm.edu	hg19	4	68442967	68442967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	STAP1	NM_012108	exon4	c.C353T	p.T118I	TTCTTACAGTAAC	.	355.0	74.0	261.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
YTHDC1	91746	hgsc.bcm.edu	hg19	4	69203170	69203170	+	Splice_Site	SNP	T	T	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	YTHDC1	NM_133370	exon5	c.460-2A>G	.	ATTCTCTGATGTT	.	96.0	24.0	66.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
FSTL5	56884	hgsc.bcm.edu	hg19	4	162307261	162307261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	FSTL5	NM_020116	exon16	c.C2182A	p.Q728K	CCTCCTGTATTTC	.	109.0	49.0	92.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
MAP3K1	4214	hgsc.bcm.edu	hg19	5	56161247	56161247	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	MAP3K1	NM_005921	exon5	c.C1116G	p.D372E	TTCAGACCCAATG	.	132.0	29.0	145.0	0.0	.	355	.	.	.	none	.	.	PASS	Atlas-SNP
MAP3K1	4214	hgsc.bcm.edu	hg19	5	56161266	56161266	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	MAP3K1	NM_005921	exon5	c.A1135C	p.T379P	AGAAAAACTTTAA	.	117.0	28.0	140.0	0.0	.	355	.	.	.	none	.	.	PASS	Atlas-SNP
ERAP1	51752	hgsc.bcm.edu	hg19	5	96130824	96130824	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	ERAP1	NM_001198541	exon5	c.T840A	p.D280E	TGCATAATCTGCT	.	64.0	18.0	91.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHB8	56128	hgsc.bcm.edu	hg19	5	140559171	140559171	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	PCDHB8	NM_019120	exon1	c.C1556G	p.S519W	TCAGGTCGCTGGA	.	381.0	50.0	311.0	0.0	.	199	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHGA3	56112	hgsc.bcm.edu	hg19	5	140725344	140725344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	PCDHGA3	NM_032011	exon1	c.G1744A	p.A582T	CGCTCCGCAGAGC	.	112.0	29.0	121.0	0.0	.	246	.	.	.	none	.	.	PASS	Atlas-SNP
MXD3	83463	hgsc.bcm.edu	hg19	5	176734952	176734952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	MXD3	NM_001142935	exon5	c.A335G	p.Q112R	TGCTCCTGATCCT	.	78.0	26.0	77.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
BRD2	6046	hgsc.bcm.edu	hg19	6	32942389	32942389	+	Missense_Mutation	SNP	C	C	A	rs56109539	alternate_allele	TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	BRD2	NM_005104	exon3	c.C180A	p.N60K	TGCCAACCCACCA	.	132.0	38.0	112.0	0.0	.	70	.	.	.	alt	.	.	PASS	Atlas-SNP
AARS2	57505	hgsc.bcm.edu	hg19	6	44279883	44279883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	AARS2,NS,carcinoma,0,1	AARS2	NM_020745	exon2	c.G361A	p.V121M	GACCCACATCTTC	.	108.0	33.0	102.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
CDK19	23097	hgsc.bcm.edu	hg19	6	110943359	110943359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	CDK19,NS,carcinoma,0,1	CDK19	NM_015076	exon11	c.G1042A	p.G348S	GGCAGCCGGCAAA	.	76.0	22.0	93.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
UPP1	7378	hgsc.bcm.edu	hg19	7	48146603	48146603	+	Silent	SNP	G	G	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	UPP1	NM_003364	exon7	c.G570C	p.L190L	GGAGCTGTTGCTG	.	87.0	23.0	50.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
C7orf72	100130988	hgsc.bcm.edu	hg19	7	50175730	50175730	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	C7orf72	NM_001161834	exon5	c.T904G	p.S302A	ACAAGATCTTTCT	.	128.0	21.0	104.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
UPK3B	80761	hgsc.bcm.edu	hg19	7	76140096	76140096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	UPK3B	NM_030570	exon1	c.G127T	p.G43W	ACCCAAGGGGCTG	.	174.0	51.0	152.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	3046428	3046428	+	Missense_Mutation	SNP	G	G	A	rs374772217	alternate_allele	TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	CSMD1_ENST00000537824,NS,carcinoma,0,2	CSMD1	NM_033225	exon35	c.C5504T	p.T1835M	CCCTCCGTAACTA	.	134.0	9.0	129.0	1.0	.	1469	.	.	.	alt	.	.	PASS	Atlas-SNP
BHLHE22	27319	hgsc.bcm.edu	hg19	8	65494023	65494023	+	Missense_Mutation	SNP	A	A	G	rs62519837	bycluster	TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	BHLHE22,extremity,malignant_melanoma,0,1	BHLHE22	NM_152414	exon1	c.A676G	p.S226G	GGCGGCAGCAGCA	.	26.0	5.0	24.0	1.0	.	21	.	.	.	weak	G|1.000;|0.000	1.000	PASS	Atlas-SNP
RECK	8434	hgsc.bcm.edu	hg19	9	36058855	36058855	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	RECK	NM_021111	exon3	c.A191T	p.K64I	GACTAAAACATCT	.	51.0	15.0	69.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
DOLK	22845	hgsc.bcm.edu	hg19	9	131709023	131709023	+	Missense_Mutation	SNP	C	C	T	rs377658203	alternate_allele	TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	DOLK,caecum,carcinoma,0,1	DOLK	NM_014908	exon1	c.G560A	p.R187H	AAGCAGCGGGGCA	.	40.0	9.0	51.0	0.0	.	39	.	.	.	alt	.	.	PASS	Atlas-SNP
GTF3C4	9329	hgsc.bcm.edu	hg19	9	135546223	135546223	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	GTF3C4	NM_012204	exon1	c.G238C	p.V80L	GTGTCTGTGTCCA	.	74.0	18.0	62.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
ANXA7	310	hgsc.bcm.edu	hg19	10	75147485	75147485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	ANXA7	NM_004034	exon8	c.C661A	p.Q221K	TTTTTTGCCTCTG	.	89.0	26.0	87.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
HSPA12A	259217	hgsc.bcm.edu	hg19	10	118434763	118434763	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	HSPA12A	NM_025015	exon12	c.C1557T	p.V519V	AAAGAGGACGGCA	.	155.0	48.0	131.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
TRPM5	29850	hgsc.bcm.edu	hg19	11	2427988	2427988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	TRPM5	NM_014555	exon21	c.G3154A	p.V1052I	AGGTGACGACCTT	.	80.0	9.0	67.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	hg19	11	6411941	6411941	+	Missense_Mutation	SNP	C	C	T	rs78250081	bycluster	TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	SMPD1	NM_000543	exon1	c.C113T	p.A38V	TGCTGGCGCTGGC	.	101.0	9.0	69.0	0.0	.	108	.	.	.	weak	.	.	PASS	Atlas-SNP
KIF5A	3798	hgsc.bcm.edu	hg19	12	57968953	57968953	+	Silent	SNP	G	G	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	KIF5A	NM_004984	exon16	c.G1803T	p.V601V	GTCTGTGGTCAAG	.	153.0	36.0	101.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
DDX54	79039	hgsc.bcm.edu	hg19	12	113602055	113602055	+	Silent	SNP	C	C	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	DDX54	NM_024072	exon15	c.G1755C	p.L585L	GCTGCACAGGTCT	.	54.0	21.0	47.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC64	92558	hgsc.bcm.edu	hg19	12	120530940	120530940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	CCDC64	NM_207311	exon9	c.T1697C	p.L566P	AACGACTCTTCTC	.	106.0	19.0	94.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
EP400	57634	hgsc.bcm.edu	hg19	12	132547068	132547068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	EP400,NS,carcinoma,0,2	EP400	NM_015409	exon47	c.G8156A	p.R2719K	TTCTCAGGCAGCA	.	100.0	4.0	77.0	0.0	.	370	.	.	.	none	.	.	PASS	Atlas-SNP
FRY	10129	hgsc.bcm.edu	hg19	13	32813948	32813948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	FRY	NM_023037	exon46	c.A6617G	p.N2206S	GGGTCAATGTGGT	.	96.0	24.0	128.0	0.0	.	312	.	.	.	none	.	.	PASS	Atlas-SNP
UGGT2	55757	hgsc.bcm.edu	hg19	13	96508522	96508522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	UGGT2	NM_020121	exon34	c.C3898A	p.L1300I	GACGAAGCCAACG	.	195.0	61.0	208.0	0.0	.	127	.	.	.	none	.	.	PASS	Atlas-SNP
CHD8	57680	hgsc.bcm.edu	hg19	14	21875030	21875030	+	Silent	SNP	G	G	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	CHD8	NM_001170629	exon13	c.C2892G	p.L964L	GTGCTTGAGACTA	.	86.0	29.0	82.0	0.0	.	339	.	.	.	none	.	.	PASS	Atlas-SNP
SLC8A3	6547	hgsc.bcm.edu	hg19	14	70634950	70634950	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	SLC8A3	NM_183002	exon2	c.T190A	p.Y64N	CCGGGTACCAGAT	.	143.0	39.0	123.0	0.0	.	234	.	.	.	none	.	.	PASS	Atlas-SNP
TECPR2	9895	hgsc.bcm.edu	hg19	14	102880977	102880977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	TECPR2	NM_001172631	exon5	c.T485C	p.L162P	AGGGGCTCTGTAA	.	84.0	17.0	82.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
C15orf39	56905	hgsc.bcm.edu	hg19	15	75498964	75498964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.,1	C15orf39	NM_015492	exon2	c.G575A	p.R192Q	TCTTGCGGGGGGT	.	41.0	7.0	58.0	1.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
CASKIN1	57524	hgsc.bcm.edu	hg19	16	2228947	2228947	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	CASKIN1	NM_020764	exon19	c.G4155A	p.Q1385Q	CACCGCCTGCAGC	.	5.0	4.0	1.0	0.0	.	130	.	.	.	none	.	.	PASS	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2815043	2815043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	SRRM2,colon,carcinoma,0,1	SRRM2	NM_016333	exon11	c.T4514C	p.L1505P	CAGAGCTCAACAA	.	84.0	26.0	72.0	0.0	.	263	.	.	.	none	.	.	PASS	Atlas-SNP
CLDN6	9074	hgsc.bcm.edu	hg19	16	3065429	3065429	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	CLDN6	NM_021195	exon2	c.C594T	p.A198A	GTAGCGGGCCATG	.	117.0	28.0	93.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
UQCRC2	7385	hgsc.bcm.edu	hg19	16	21974187	21974187	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	UQCRC2	NM_003366	exon6	c.C495T	p.A165A	TGTGGCCTTTCAG	.	97.0	48.0	80.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
ERN2	10595	hgsc.bcm.edu	hg19	16	23711991	23711991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	ERN2	NM_033266	exon13	c.C1538T	p.T513I	AGGGGGGTCTCCT	.	96.0	43.0	79.0	0.0	.	131	.	.	.	none	.	.	PASS	Atlas-SNP
MBTPS1	8720	hgsc.bcm.edu	hg19	16	84132688	84132688	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	MBTPS1	NM_003791	exon3	c.A391C	p.K131Q	AGACTTTTCGTTG	.	172.0	29.0	160.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	hg19	17	56833454	56833454	+	Silent	SNP	G	G	A	rs77856248		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	PPM1E,colon,carcinoma,0,1	PPM1E	NM_014906	exon1	c.G96A	p.E32E	GCCGGAGCCGGAA	.	298.0	34.0	206.0	0.0	.	97	.	.	.	weak	.	.	PASS	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	hg19	17	56833457	56833457	+	Silent	SNP	G	G	C	rs74256772		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	PPM1E,colon,carcinoma,0,1	PPM1E	NM_014906	exon1	c.G99C	p.P33P	GGAGCCGGAACCC	.	294.0	41.0	202.0	2.0	.	97	.	.	.	weak	.	.	PASS	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	hg19	17	56833490	56833490	+	Silent	SNP	G	G	A	rs59676153		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	PPM1E,colon,carcinoma,0,1	PPM1E	NM_014906	exon1	c.G132A	p.E44E	ACCCGAGTCCGAG	.	307.0	35.0	206.0	0.0	.	97	.	.	.	weak	.	.	PASS	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	hg19	17	56833497	56833497	+	Missense_Mutation	SNP	C	C	T	rs61052860		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	PPM1E,colon,carcinoma,0,1	PPM1E	NM_014906	exon1	c.C139T	p.P47S	TCCGAGCCCGAGC	.	317.0	16.0	204.0	0.0	.	97	.	.	.	weak	C|0.900;T|0.100	0.100	PASS	Atlas-SNP
MGAT5B	146664	hgsc.bcm.edu	hg19	17	74943970	74943970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	MGAT5B	NM_198955	exon15	c.T2009C	p.F670S	GCCCCTTTGTCCT	.	141.0	25.0	112.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
LPIN2	9663	hgsc.bcm.edu	hg19	18	2931299	2931299	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	LPIN2	NM_014646	exon9	c.C1411G	p.L471V	GGGAGAGGGTAAC	.	41.0	15.0	49.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
EPB41L3	23136	hgsc.bcm.edu	hg19	18	5395104	5395104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	EPB41L3	NM_012307	exon21	c.A3115G	p.I1039V	TGACTATTCGCTT	.	79.0	24.0	80.0	0.0	.	222	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	8244180	8244180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	PTPRM	NM_001105244	exon15	c.A2425G	p.M809V	TCATTCATGGACA	.	135.0	42.0	125.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	8380303	8380303	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	PTPRM	NM_001105244	exon29	c.C3796T	p.Q1266X	TATAAACAGCCTT	.	58.0	22.0	75.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
KDSR	2531	hgsc.bcm.edu	hg19	18	61018276	61018276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	KDSR	NM_002035	exon6	c.C454A	p.P152T	GGCTGGGGTACAC	.	102.0	32.0	100.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
JSRP1	126306	hgsc.bcm.edu	hg19	19	2254452	2254452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	JSRP1	NM_144616	exon3	c.G139A	p.V47M	GGGGCACGCTGCC	.	110.0	36.0	103.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
PRAM1	84106	hgsc.bcm.edu	hg19	19	8563902	8563902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	PRAM1	NM_032152	exon2	c.C790A	p.R264S	AGTCGCGCTTCGG	.	71.0	4.0	89.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
ATG4D	84971	hgsc.bcm.edu	hg19	19	10662945	10662945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	ATG4D	NM_032885	exon9	c.G1187A	p.G396D	CCGTGGGCTTCTA	.	49.0	18.0	48.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
DOCK6	57572	hgsc.bcm.edu	hg19	19	11358812	11358812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	DOCK6	NM_020812	exon7	c.C736T	p.R246C	TACAGCGTTCCAC	.	51.0	17.0	44.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF799	90576	hgsc.bcm.edu	hg19	19	12502155	12502155	+	Missense_Mutation	SNP	T	T	G	rs201335235		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	ZNF799	NM_001080821	exon4	c.A1057C	p.K353Q	GACTTTTCAGTGA	.	77.0	6.0	98.0	0.0	.	111	.	.	.	weak	.	.	PASS	Atlas-SNP
COLGALT1	79709	hgsc.bcm.edu	hg19	19	17670124	17670124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	.	NM_024656	exon2	c.G265A	p.A89T	AGGGTGGCTACGG	.	88.0	25.0	81.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	31039335	31039335	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	ZNF536	NM_014717	exon4	c.A2809T	p.K937X	GACATGAAGGACA	.	70.0	16.0	48.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
GPATCH1	55094	hgsc.bcm.edu	hg19	19	33597758	33597758	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	GPATCH1	NM_018025	exon10	c.T1238G	p.L413R	ACCAACTGAATGC	.	137.0	51.0	113.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF790	388536	hgsc.bcm.edu	hg19	19	37314679	37314679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	ZNF790	NM_206894	exon3	c.G23A	p.R8K	ACATCCCTGAACA	.	78.0	12.0	113.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
PLD3	23646	hgsc.bcm.edu	hg19	19	40883752	40883752	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	PLD3	NM_012268	exon12	c.C1245G	p.N415K	TGTCAACCACAAC	.	117.0	39.0	125.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
PAFAH1B3	5050	hgsc.bcm.edu	hg19	19	42804227	42804227	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	PAFAH1B3	NM_001145940	exon5	c.G303A	p.V101V	GGTGCCCACCCAG	.	91.0	20.0	61.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	hg19	19	42873075	42873075	+	Missense_Mutation	SNP	G	G	A	rs374088709		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	MEGF8	NM_001271938	exon37	c.G6562A	p.D2188N	CACCACGACTGCA	.	76.0	26.0	74.0	0.0	.	358	.	.	.	weak	.	.	PASS	Atlas-SNP
PTH2	113091	hgsc.bcm.edu	hg19	19	49926468	49926468	+	Splice_Site	SNP	C	C	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	PTH2	NM_178449	exon2	c.128+1G>T	.	CACCTACCTGAGG	.	182.0	21.0	158.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
SCAF1	58506	hgsc.bcm.edu	hg19	19	50161046	50161046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	SCAF1	NM_021228	exon10	c.G3647T	p.R1216L	AGGAGCGGGCGGT	.	138.0	34.0	137.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
PTOV1	53635	hgsc.bcm.edu	hg19	19	50357983	50357983	+	Silent	SNP	C	C	T	rs149977568		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	PTOV1,colon,carcinoma,0,1	PTOV1	NM_017432	exon3	c.C384T	p.G128G	CCAAGGCGAGAAC	.	81.0	27.0	83.0	0.0	.	41	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
ZNF468	90333	hgsc.bcm.edu	hg19	19	53344638	53344638	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	ZNF468	NM_001008801	exon4	c.A909G	p.E303E	GTCACATTCTTCA	.	57.0	17.0	64.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
C20orf96	140680	hgsc.bcm.edu	hg19	20	270903	270903	+	Silent	SNP	A	A	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	C20orf96	NM_153269	exon2	c.T66A	p.V22V	CACCGGAACCTGG	.	133.0	47.0	93.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
PI3	5266	hgsc.bcm.edu	hg19	20	43804687	43804687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	PI3	NM_002638	exon2	c.C265A	p.P89T	AATCCCCCTAACC	.	152.0	64.0	120.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
CASS4	57091	hgsc.bcm.edu	hg19	20	55028020	55028020	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	CASS4	NM_020356	exon5	c.G1788C	p.E596D	GGAAGAGACTGTG	.	129.0	29.0	105.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
CTCFL	140690	hgsc.bcm.edu	hg19	20	56098318	56098318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	CTCFL	NM_001269044	exon2	c.A560G	p.E187G	TTCTTCTCCTGCT	.	104.0	46.0	99.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
USP25	29761	hgsc.bcm.edu	hg19	21	17250242	17250242	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	USP25	NM_013396	exon23	c.A2927T	p.E976V	TGGAAGAAAAGGA	.	175.0	43.0	189.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
TRPM2	7226	hgsc.bcm.edu	hg19	21	45789155	45789155	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	TRPM2	NM_003307	exon5	c.G700C	p.G234R	AAGGAAGGCGAGC	.	229.0	78.0	223.0	0.0	.	196	.	.	.	none	.	.	PASS	Atlas-SNP
PIWIL3	440822	hgsc.bcm.edu	hg19	22	25158388	25158388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	PIWIL3	NM_001008496	exon2	c.C79A	p.P27T	CTCTGGGTCCCCC	.	79.0	27.0	50.0	0.0	.	115	.	.	.	none	.	.	PASS	Atlas-SNP
KCTD17	79734	hgsc.bcm.edu	hg19	22	37458580	37458580	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	KCTD17	NM_024681	exon8	c.G840C	p.E280D	GCCAGAGGCACCC	.	54.0	12.0	36.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
KCTD17	79734	hgsc.bcm.edu	hg19	22	37458581	37458581	+	Missense_Mutation	SNP	G	G	T	rs377601872	alternate_allele	TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	KCTD17	NM_024681	exon8	c.G841T	p.A281S	CCAGAGGCACCCG	.	54.0	11.0	36.0	0.0	.	17	.	.	.	alt	.	.	PASS	Atlas-SNP
TLR7	51284	hgsc.bcm.edu	hg19	X	12905654	12905654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	TLR7	NM_016562	exon3	c.A2027G	p.N676S	CTCCAAATCTAAA	.	95.0	52.0	81.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
MAGED2	10916	hgsc.bcm.edu	hg19	X	54841870	54841870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	MAGED2	NM_201222	exon12	c.T1576G	p.W526G	GGACCCTGGGCCA	.	165.0	104.0	192.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
ABCD1	215	hgsc.bcm.edu	hg19	X	153005611	153005611	+	Silent	SNP	G	G	T	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	ABCD1	NM_000033	exon6	c.G1554T	p.R518R	GTTCCGGATCCTG	.	42.0	26.0	39.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	5979	5979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	.	ENST00000361624	exon1	c.G76A	p.A26T	GCATGAGCTGGAG	.	117.0	29.0	47.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13031	13031	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	.	ENST00000361567	exon1	c.G695A	p.W232X	ACCCCTGACTCCC	.	87.0	6.0	29.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
COL4A3BP	10087	hgsc.bcm.edu	hg19	5	74676981	74676981	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	COL4A3BP	NM_001130105	exon17	c.2048delG	p.C683fs	.	.	73.0	22.0	83.0	0.0	.	72	.	0.30137	0	none	.	.	PASS	Atlas-Indel,Pindel
NPTX1	4884	hgsc.bcm.edu	hg19	17	78450218	78450227	+	Frame_Shift_Del	DEL	CAGGTGCGCG	CAGGTGCGCG	-	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	CAGGTGCGCG	CAGGTGCGCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	NPTX1	NM_002522	exon1	c.21_30del	p.7_10del	.	.	38.0	15.0	24.0	0.0	.	28	.	0.394737	0	none	.	.	PASS	Atlas-INDEL
SLC16A8	23539	hgsc.bcm.edu	hg19	22	38476908	38476913	+	In_Frame_Del	DEL	ACTGGG	ACTGGG	-	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	ACTGGG	ACTGGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	SLC16A8	NM_013356	exon4	c.1133_1138del	p.378_380del	.	.	68.0	10.0	87.0	0.0	.	13	.	0.147059	0	none	.	.	PASS	Atlas-Indel,Pindel
SMEK2	57223	hgsc.bcm.edu	hg19	2	55795473	55795473	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	SMEK2	NM_001122964	exon13	c.1793delT	p.I598fs	.	.	144.0	34.0	160.0	0.0	.	86	.	0.236111	0	none	.	.	PASS	Atlas-Indel,Pindel
MSANTD4	84437	hgsc.bcm.edu	hg19	11	105880566	105880567	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	.	NM_032424	exon3	c.734_735insCA	p.M245fs	.	.	87.0	25.0	84.0	0.0	.	.	.	0.287356	0	none	.	.	PASS	Atlas-Indel,Pindel
GABRG3	2567	hgsc.bcm.edu	hg19	15	27773100	27773105	+	In_Frame_Del	DEL	AGATGG	AGATGG	-	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	AGATGG	AGATGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	GABRG3	NM_033223	exon9	c.1083_1088del	p.361_363del	.	.	53.0	12.0	64.0	0.0	.	115	.	0.226415	0	none	.	.	PASS	Atlas-Indel,Pindel
SCAMP2	10066	hgsc.bcm.edu	hg19	15	75140977	75141001	+	Frame_Shift_Del	DEL	ATGTAGATCCCTATTTGACAAAAAA	ATGTAGATCCCTATTTGACAAAAAA	-	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	ATGTAGATCCCTATTTGACAAAAAA	ATGTAGATCCCTATTTGACAAAAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	SCAMP2	NM_005697	exon7	c.675_699del	p.225_233del	.	.	86.0	13.0	79.0	0.0	.	18	.	0.151163	0	none	.	.	PASS	Atlas-Indel,Pindel
GOLGA4	2803	hgsc.bcm.edu	hg19	3	37368460	37368460	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	GOLGA4	NM_001172713	exon15	c.5148delA	p.K1716fs	.	.	271.0	85.0	278.0	0.0	.	173	.	0.313653	0	none	.	.	PASS	Atlas-Indel,Pindel
FASTKD1	79675	hgsc.bcm.edu	hg19	2	170403017	170403017	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	FASTKD1	NM_024622	exon8	c.1413delT	p.N471fs	.	.	248.0	66.0	265.0	0.0	.	86	.	0.266129	0	none	.	.	PASS	Atlas-Indel,Pindel
COL16A1	1307	hgsc.bcm.edu	hg19	1	32149737	32149737	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	COL16A1	NM_001856	exon32	c.2257delG	p.E753fs	.	.	205.0	72.0	184.0	0.0	.	137	.	0.35122	0	none	.	.	PASS	Atlas-Indel,Pindel
UNKL	64718	hgsc.bcm.edu	hg19	16	1417847	1417848	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	UNKL	NM_001193388	exon13	c.1598_1599del	p.533_533del	.	.	193.0	65.0	151.0	0.0	.	46	.	0.336788	0	none	.	.	PASS	Atlas-Indel,Pindel
WIPF2	147179	hgsc.bcm.edu	hg19	17	38430244	38430244	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	WIPF2	NM_133264	exon6	c.1172delC	p.S391fs	.	.	130.0	57.0	113.0	0.0	.	55	.	0.438462	0	none	.	.	PASS	Atlas-Indel,Pindel
PCDHGB5	56101	hgsc.bcm.edu	hg19	5	140777735	140777740	+	In_Frame_Del	DEL	TGCCAG	TGCCAG	-	novel		TCGA-UZ-A9PO-01A-11D-A382-10	TCGA-UZ-A9PO-10A-01D-A385-10	TGCCAG	TGCCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	72b12c65-5631-49f5-843b-4bc9f58ce902	41481a6b-9b6c-44cb-8db2-6b911dab119d	.	.	NM_032099	exon1	c.40_45del	p.14_15del	.	.	305.0	38.0	323.0	0.0	.	.	.	0.125	.	none	.	.	PASS	Pindel
