Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
SLC35E2	9906	hgsc.bcm.edu	hg19	1	1670432	1670432	+	Missense_Mutation	SNP	T	T	A	rs17339526	alternate_allele	TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	SLC35E2,NS,carcinoma,0,1	SLC35E2	NM_182838	exon3	c.A387T	p.L129F	CTGATATAAACAG	.	790.0	101.0	1349.0	0.0	.	13	.	.	.	alt	T|1.000;|0.000	.	PASS	Atlas-SNP
ICMT	23463	hgsc.bcm.edu	hg19	1	6285207	6285207	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	ICMT	NM_012405	exon5	c.A788T	p.Y263F	TCCAGGTACTCCT	.	41.0	17.0	61.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
KLHDC7A	127707	hgsc.bcm.edu	hg19	1	18808387	18808387	+	Silent	SNP	C	C	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	KLHDC7A	NM_152375	exon1	c.C912A	p.G304G	CCAGGGCAGGCTG	.	61.0	28.0	121.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
LEPRE1	64175	hgsc.bcm.edu	hg19	1	43224941	43224941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	LEPRE1	NM_001146289	exon3	c.G739A	p.E247K	GCCCTTCGCAGAG	.	121.0	7.0	199.0	0.0	.	130	.	.	.	none	.	.	PASS	Atlas-SNP
BCAR3	8412	hgsc.bcm.edu	hg19	1	94048486	94048486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	BCAR3	NM_001261409	exon7	c.C1058G	p.S353W	ACACCCGAGGACT	.	11.0	5.0	22.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB7B	51043	hgsc.bcm.edu	hg19	1	154987953	154987953	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	ZBTB7B	NM_001252406	exon4	c.T919A	p.Y307N	GAACCCTATGAGG	.	102.0	47.0	154.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
RC3H1	149041	hgsc.bcm.edu	hg19	1	173921219	173921219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	RC3H1	NM_172071	exon13	c.T2428C	p.Y810H	GAGAGTATTGGCT	.	45.0	19.0	70.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
LRRN2	10446	hgsc.bcm.edu	hg19	1	204587083	204587083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	LRRN2	NM_006338	exon3	c.C2038T	p.R680W	CAACCCGGACAGA	.	116.0	44.0	203.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228509045	228509045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	OBSCN	NM_001271223	exon66	c.G17374A	p.V5792I	CCACAGGTTGGGG	.	36.0	10.0	83.0	0.0	.	2142	.	.	.	none	.	.	PASS	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54873419	54873419	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	SPTBN1	NM_003128	exon23	c.T4673G	p.L1558R	GCAGCCTCAGCGC	.	105.0	6.0	188.0	0.0	.	378	.	.	.	none	.	.	PASS	Atlas-SNP
POLR1A	25885	hgsc.bcm.edu	hg19	2	86297161	86297161	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	POLR1A	NM_015425	exon13	c.C1846T	p.Q616X	ACTGCTGATCAGT	.	21.0	9.0	27.0	0.0	.	137	.	.	.	none	.	.	PASS	Atlas-SNP
RNF103-CHMP3	100526767	hgsc.bcm.edu	hg19	2	86769412	86769412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	.	NM_001198954	exon4	c.A156G	p.I52M	CTTTCTTATCTTC	.	142.0	64.0	227.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MERTK	10461	hgsc.bcm.edu	hg19	2	112686995	112686995	+	Silent	SNP	T	T	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	MERTK	NM_006343	exon2	c.T360G	p.P120P	TGTACCTAATATA	.	116.0	41.0	188.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
AMER3	205147	hgsc.bcm.edu	hg19	2	131519874	131519874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	FAM123C,NS,carcinoma,0,1	.	NM_152698	exon2	c.G229A	p.G77R	AAAGGGGGACCCG	.	80.0	4.0	140.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SCN9A	6335	hgsc.bcm.edu	hg19	2	167094694	167094694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	SCN9A	NM_002977	exon20	c.C3678A	p.F1226L	CAGAATGAAGATG	.	136.0	51.0	301.0	0.0	.	296	.	.	.	none	.	.	PASS	Atlas-SNP
ATP5G3	518	hgsc.bcm.edu	hg19	2	176043935	176043935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	ATP5G3	NM_001190329	exon4	c.T164C	p.L55P	TGGATTAGCTGAG	.	52.0	21.0	69.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179644087	179644087	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	TTN	NM_001267550	exon23	c.A3832T	p.K1278X	CCATCTTTTCTTC	.	105.0	47.0	135.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF589	51385	hgsc.bcm.edu	hg19	3	48309513	48309513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	ZNF589	NM_016089	exon4	c.A332G	p.H111R	GTTTCCATGCAGG	.	31.0	26.0	64.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	hg19	5	145583374	145583374	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	RBM27	NM_018989	exon1	c.T46C	p.L16L	GCCAAGTTACTGG	.	106.0	35.0	202.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R3G	648791	hgsc.bcm.edu	hg19	6	5086761	5086761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	PPP1R3G	NM_001145115	exon1	c.A1042G	p.T348A	AACTACACGCTGC	.	27.0	11.0	56.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
OR10C1	442194	hgsc.bcm.edu	hg19	6	29408295	29408295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	OR10C1	NM_013941	exon1	c.G503A	p.C168Y	CCTTCTGCGGCCC	.	34.0	13.0	36.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
MICA	100507436	hgsc.bcm.edu	hg19	6	31379810	31379810	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	MICA	NM_001177519	exon4	c.A700T	p.N234Y	CCCCGGAATATCA	.	63.0	25.0	88.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
BAI3	577	hgsc.bcm.edu	hg19	6	69772840	69772840	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	BAI3	NM_001704	exon16	c.T2348A	p.I783N	CTGTCATTAATTC	.	63.0	30.0	79.0	0.0	.	451	.	.	.	none	.	.	PASS	Atlas-SNP
HGC6.3	0	hgsc.bcm.edu	hg19	6	168377132	168377132	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	.	NM_001129895	exon1	c.C201T	p.H67H	TGCAGTGTGTTGG	.	197.0	8.0	263.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ITGB8	3696	hgsc.bcm.edu	hg19	7	20449400	20449400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	ITGB8	NM_002214	exon13	c.A2186G	p.K729R	CAAAAAAGGTCAG	.	64.0	25.0	113.0	0.0	.	159	.	.	.	none	.	.	PASS	Atlas-SNP
URGCP	55665	hgsc.bcm.edu	hg19	7	43917041	43917041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	URGCP	NM_001077663	exon6	c.G2021T	p.W674L	GTGACCCAGCGGA	.	24.0	12.0	42.0	0.0	.	170	.	.	.	none	.	.	PASS	Atlas-SNP
MDH2	4191	hgsc.bcm.edu	hg19	7	75693752	75693752	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	MDH2	NM_005918	exon7	c.A729G	p.G243G	AGCCGGAGCAGGT	.	79.0	37.0	121.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
MLL5	55904	hgsc.bcm.edu	hg19	7	104742604	104742604	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	MLL5	NM_018682	exon16	c.T2159G	p.L720R	CAGCACTTAATAA	.	81.0	23.0	141.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
WASL	8976	hgsc.bcm.edu	hg19	7	123332492	123332492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	WASL	NM_003941	exon9	c.T1256C	p.L419P	TTTTTTAGCTGAG	.	44.0	14.0	73.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
BRAF	673	hgsc.bcm.edu	hg19	7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	rs121913227	bycluster	TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	BRAF,NS,adenoma,0,1	BRAF	NM_004333	exon15	c.T1799A	p.V600E	GATTTCACTGTAG	.	50.0	19.0	55.0	0.0	.	36346	.	.	.	weak	.	.	PASS	Atlas-SNP
NKX2-6	137814	hgsc.bcm.edu	hg19	8	23560587	23560587	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	NKX2-6	NM_001136271	exon2	c.C283T	p.L95L	CGTTCAGGCCGGG	.	36.0	33.0	69.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
INTS9	55756	hgsc.bcm.edu	hg19	8	28671112	28671112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	INTS9	NM_018250	exon7	c.T506C	p.L169P	TCCTTGAGAGGAG	.	71.0	61.0	145.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
INTS9	55756	hgsc.bcm.edu	hg19	8	28671113	28671113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	INTS9	NM_018250	exon7	c.C505T	p.L169F	CCTTGAGAGGAGA	.	72.0	62.0	142.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	hg19	8	73480085	73480085	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	KCNB2	NM_004770	exon2	c.T116G	p.I39S	TTAAGATCAATGT	.	55.0	42.0	106.0	0.0	.	228	.	.	.	none	.	.	PASS	Atlas-SNP
ZCCHC7	84186	hgsc.bcm.edu	hg19	9	37349376	37349376	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	ZCCHC7	NM_032226	exon7	c.A1010C	p.K337T	CCAAAAAGCCGAA	.	52.0	21.0	110.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
C9orf3	84909	hgsc.bcm.edu	hg19	9	97767897	97767897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	C9orf3	NM_001193329	exon12	c.A2114G	p.K705R	TTGAAAAGGTAGG	.	115.0	40.0	200.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
OAT	4942	hgsc.bcm.edu	hg19	10	126097337	126097337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	OAT	NM_000274	exon3	c.T397C	p.Y133H	TGTGGTAGTTGAA	.	175.0	47.0	293.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
CALCA	796	hgsc.bcm.edu	hg19	11	14992664	14992664	+	Silent	SNP	T	T	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	CALCA	NM_001033953	exon2	c.A75T	p.A25A	TGGTGCTGCATGG	.	32.0	10.0	53.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
LTBP3	4054	hgsc.bcm.edu	hg19	11	65320922	65320922	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	LTBP3	NM_001130144	exon4	c.A944T	p.K315M	TGGCACTTGCTCT	.	46.0	17.0	70.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
ABCG4	64137	hgsc.bcm.edu	hg19	11	119020846	119020846	+	Silent	SNP	A	A	T	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	ABCG4	NM_022169	exon2	c.A171T	p.S57S	GCGCTCAGCCGTG	.	58.0	31.0	92.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
CMAS	55907	hgsc.bcm.edu	hg19	12	22208120	22208120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	CMAS	NM_018686	exon2	c.G298A	p.V100M	GAGAATGTGGCCA	.	157.0	42.0	181.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
TPCN1	53373	hgsc.bcm.edu	hg19	12	113733831	113733831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	TPCN1,colon,carcinoma,0,1	TPCN1	NM_001143819	exon29	c.G2617A	p.A873T	GCCCCCGCCGCCC	.	147.0	54.0	181.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
KNTC1	9735	hgsc.bcm.edu	hg19	12	123065184	123065184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	KNTC1	NM_014708	exon33	c.G2949A	p.M983I	AGAAATGTTGAAA	.	194.0	104.0	254.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
FBRSL1	57666	hgsc.bcm.edu	hg19	12	133158846	133158846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	FBRSL1	NM_001142641	exon16	c.A2324G	p.Q775R	AGGAGCAGGAACG	.	115.0	63.0	130.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	hg19	13	110844571	110844571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	COL4A1	NM_001845	exon24	c.C1526T	p.A509V	ACTCCTGCAACAC	.	33.0	9.0	64.0	0.0	.	372	.	.	.	none	.	.	PASS	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	hg19	13	110844572	110844572	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	COL4A1	NM_001845	exon24	c.G1525C	p.A509P	CTCCTGCAACACC	.	34.0	9.0	65.0	0.0	.	372	.	.	.	none	.	.	PASS	Atlas-SNP
DDHD1	80821	hgsc.bcm.edu	hg19	14	53522531	53522531	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	DDHD1	NM_001160147	exon11	c.A2113C	p.M705L	GCTTCATATGTTC	.	52.0	23.0	79.0	0.0	.	202	.	.	.	none	.	.	PASS	Atlas-SNP
ULK3	25989	hgsc.bcm.edu	hg19	15	75135403	75135403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	ULK3	NM_001099436	exon1	c.T44C	p.I15T	GTGAGGATGAAGC	.	98.0	29.0	153.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
SLC28A1	9154	hgsc.bcm.edu	hg19	15	85476403	85476403	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	SLC28A1	NM_004213	exon13	c.T1111A	p.S371T	GCAGCCTCTGTGA	.	34.0	14.0	55.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
PRR14	78994	hgsc.bcm.edu	hg19	16	30666905	30666905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	PRR14	NM_024031	exon10	c.G1397A	p.R466Q	TGCCTCGACCAAT	.	81.0	47.0	70.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
VMO1	284013	hgsc.bcm.edu	hg19	17	4688689	4688689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	VMO1	NM_182566	exon3	c.A577G	p.N193D	CGTCGTTCAGCGC	.	29.0	5.0	41.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
OMG	4974	hgsc.bcm.edu	hg19	17	29622689	29622689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	OMG	NM_002544	exon2	c.A661C	p.T221P	AAAGGGTTATCTC	.	79.0	23.0	100.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	hg19	17	65944312	65944312	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	BPTF	NM_182641	exon23	c.C7816T	p.Q2606X	AGCAAGCAGAATG	.	96.0	21.0	113.0	0.0	.	415	.	.	.	none	.	.	PASS	Atlas-SNP
NPC1	4864	hgsc.bcm.edu	hg19	18	21112245	21112245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	NPC1	NM_000271	exon25	c.C3758A	p.P1253Q	ACTGATGGCCCTA	.	67.0	22.0	66.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
KATNAL2	83473	hgsc.bcm.edu	hg19	18	44595931	44595931	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	KATNAL2	NM_031303	exon10	c.T752G	p.I251S	CCACCATTGTCAG	.	62.0	35.0	109.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
ALPK2	115701	hgsc.bcm.edu	hg19	18	56149190	56149190	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	ALPK2	NM_052947	exon13	c.A6378G	p.K2126K	CAGCATTTTGCAA	.	56.0	23.0	113.0	0.0	.	487	.	.	.	none	.	.	PASS	Atlas-SNP
SAFB	6294	hgsc.bcm.edu	hg19	19	5664085	5664085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	SAFB	NM_002967	exon16	c.T2206C	p.Y736H	GAGCGCTACCATT	.	38.0	19.0	47.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
MLLT1	4298	hgsc.bcm.edu	hg19	19	6270658	6270658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	MLLT1	NM_005934	exon2	c.G125A	p.C42Y	ATGTCACATTGCT	.	36.0	19.0	52.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9064158	9064158	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	MUC16	NM_024690	exon3	c.C23288G	p.T7763R	GCTTCTGTATGTG	.	96.0	39.0	133.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	hg19	19	11558367	11558367	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	PRKCSH	NM_001001329	exon11	c.G963A	p.E321E	GGAGGAGGAGGAA	.	74.0	9.0	108.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
AKAP8	10270	hgsc.bcm.edu	hg19	19	15483755	15483755	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	AKAP8	NM_005858	exon5	c.C768T	p.Y256Y	CACGCCGTAGTCG	.	67.0	25.0	110.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
ATP1A3	478	hgsc.bcm.edu	hg19	19	42482815	42482815	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	ATP1A3	NM_001256214	exon12	c.A1612T	p.K538X	CCTCCTTCATTTC	.	36.0	18.0	48.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
APOC4	346	hgsc.bcm.edu	hg19	19	45448498	45448498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	APOC4	NM_001646	exon3	c.G320A	p.S107N	AAGACAGCCTCTT	.	39.0	15.0	88.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50714027	50714027	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	MYH14	NM_001077186	exon2	c.C405T	p.Y135Y	CATCTACGTGAGT	.	63.0	29.0	109.0	0.0	.	261	.	.	.	none	.	.	PASS	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50714028	50714028	+	Splice_Site	SNP	G	G	C	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	MYH14	NM_001077186	exon2	c.405+1G>C	.	ATCTACGTGAGTG	.	65.0	30.0	110.0	0.0	.	261	.	.	.	none	.	.	PASS	Atlas-SNP
PHF20	51230	hgsc.bcm.edu	hg19	20	34459634	34459634	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	PHF20	NM_016436	exon9	c.G1165C	p.G389R	TCCTTTGGGGATG	.	88.0	46.0	104.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	hg19	20	62193551	62193551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	.	NM_001037335	exon11	c.C6403G	p.P2135A	TGCTGGGGATCAC	.	73.0	19.0	69.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
IL10RB	3588	hgsc.bcm.edu	hg19	21	34648956	34648956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	IL10RB	NM_000628	exon3	c.T229A	p.S77T	GATTTCTCAAGTC	.	52.0	20.0	91.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	hg19	21	46896343	46896343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	COL18A1	NM_030582	exon5	c.G1417A	p.D473N	ACGGAAGATTCCA	.	64.0	32.0	90.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
TRMT2A	27037	hgsc.bcm.edu	hg19	22	20104104	20104104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	TRMT2A	NM_001257994	exon2	c.A56G	p.E19G	CTGCTCTCCTGGC	.	25.0	7.0	43.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
PNPLA4	8228	hgsc.bcm.edu	hg19	X	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	PNPLA4	NM_004650	exon7	c.T668C	p.L223P	GGAAAAAGGGCTT	.	148.0	6.0	240.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
BCOR	54880	hgsc.bcm.edu	hg19	X	39930898	39930898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	BCOR	NM_001123385	exon5	c.T3043C	p.Y1015H	CACAGTAAGCAGC	.	148.0	126.0	234.0	0.0	.	351	.	.	.	none	.	.	PASS	Atlas-SNP
ND1	10625	hgsc.bcm.edu	hg19	MT	3427	3427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	.	ENST00000361390	exon1	c.G121A	p.G41S	GTTGTAGGCCCCT	.	8.0	6.0	28.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SEMG2	6407	hgsc.bcm.edu	hg19	20	43850357	43850357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	SEMG2	NM_003008	exon2	c.83delC	p.S28X	.	.	156.0	87.0	190.0	0.0	.	92	.	0.557692	0	none	.	.	PASS	Atlas-Indel,Pindel
CTAGE5	4253	hgsc.bcm.edu	hg19	14	39777771	39777775	+	Frame_Shift_Del	DEL	AAATG	AAATG	-	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	AAATG	AAATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	CTAGE5	NM_001247989	exon13	c.1187_1191del	p.396_397del	.	.	211.0	46.0	312.0	0.0	.	75	.	0.218009	0	none	.	.	PASS	Atlas-Indel,Pindel
MUC2	4583	hgsc.bcm.edu	hg19	11	1092801	1092802	+	In_Frame_Ins	INS	-	-	CCTCCAACA	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	MUC2	NM_002457	exon30	c.4620_4621insCCTCCAACA	p.I1540delinsIPPT	.	.	31.0	13.0	49.0	0.0	.	614	.	0.419355	0	none	.	.	PASS	Atlas-INDEL
ESF1	51575	hgsc.bcm.edu	hg19	20	13763764	13763765	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	ESF1	NM_001276380	exon2	c.23_24insA	p.M8fs	.	.	60.0	17.0	57.0	0.0	.	77	.	0.283333	0	none	.	.	PASS	Atlas-Indel,Pindel
VWA5B2	90113	hgsc.bcm.edu	hg19	3	183958875	183958899	+	Frame_Shift_Del	DEL	CCACTGTTGTCTACTCTAAAGGTAA	CCACTGTTGTCTACTCTAAAGGTAA	-	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	CCACTGTTGTCTACTCTAAAGGTAA	CCACTGTTGTCTACTCTAAAGGTAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	VWA5B2,NS,carcinoma,-1,1	VWA5B2	NM_138345	exon17	c.2941_2962del	p.981_988del	.	.	24.0	19.0	66.0	0.0	.	47	.	0.791667	0	none	.	.	PASS	Atlas-Indel,Pindel
DAZAP1	26528	hgsc.bcm.edu	hg19	19	1418337	1418342	+	In_Frame_Del	DEL	GCCAGC	GCCAGC	-	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	GCCAGC	GCCAGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	DAZAP1	NM_018959	exon3	c.204_209del	p.68_70del	.	.	40.0	14.0	56.0	0.0	.	52	.	0.35	0	none	.	.	PASS	Atlas-Indel,Pindel
HIVEP1	3096	hgsc.bcm.edu	hg19	6	12123780	12123781	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-UZ-A9PP-01A-11D-A42J-10	TCGA-UZ-A9PP-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b34905a0-79be-4958-821c-f27af735d65e	09c514d0-26ff-4e99-b400-1019a9243565	.	HIVEP1	NM_002114	exon4	c.3752_3753insC	p.C1251fs	.	.	43.0	23.0	60.0	0.0	.	242	.	0.534884	0	none	.	.	PASS	Atlas-Indel,Pindel
