Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ATAD3B	83858	hgsc.bcm.edu	hg19	1	1426049	1426049	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	ATAD3B	NM_031921	exon15	c.C1612T	p.Q538X	TCCTGGCAGGTGA	.	131.0	43.0	183.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
MYSM1	114803	hgsc.bcm.edu	hg19	1	59165666	59165666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	MYSM1	NM_001085487	exon1	c.C59A	p.A20E	GGCTGTGCCCCCG	.	43.0	14.0	57.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
FUBP1	8880	hgsc.bcm.edu	hg19	1	78426050	78426050	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	FUBP1	NM_003902	exon15	c.G1475C	p.G492A	GGTGGTCCAGGAT	.	242.0	102.0	311.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
CCT3	7203	hgsc.bcm.edu	hg19	1	156303343	156303343	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	CCT3	NM_005998	exon5	c.T299C	p.I100T	CCAAGAATAATTA	.	47.0	23.0	65.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
SLAMF6	114836	hgsc.bcm.edu	hg19	1	160460386	160460386	+	Missense_Mutation	SNP	G	G	A	rs148686177		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	SLAMF6	NM_052931	exon4	c.C736T	p.L246F	AAACAAGTAACAG	.	271.0	117.0	300.0	0.0	.	46	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
RABGAP1L	9910	hgsc.bcm.edu	hg19	1	174247864	174247864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	RABGAP1L	NM_014857	exon10	c.T1270C	p.W424R	CGATTTTGGTATT	.	103.0	44.0	100.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
TNN	63923	hgsc.bcm.edu	hg19	1	175087824	175087824	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	TNN	NM_022093	exon11	c.C2514T	p.T838T	AGAGACCAGGGAG	.	312.0	135.0	387.0	0.0	.	297	.	.	.	none	.	.	PASS	Atlas-SNP
TNN	63923	hgsc.bcm.edu	hg19	1	175105980	175105980	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	TNN	NM_022093	exon17	c.A3451T	p.T1151S	AACCTCACCACCG	.	82.0	34.0	121.0	0.0	.	297	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R15B	84919	hgsc.bcm.edu	hg19	1	204380034	204380034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	PPP1R15B	NM_032833	exon1	c.C506A	p.P169H	GCTGCAGGGTCCA	.	163.0	58.0	185.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
EMILIN1	11117	hgsc.bcm.edu	hg19	2	27305967	27305967	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	EMILIN1	NM_007046	exon4	c.C1528T	p.Q510X	GAGGGGCAGCTGC	.	58.0	6.0	94.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
ERLEC1	27248	hgsc.bcm.edu	hg19	2	54040085	54040085	+	Splice_Site	SNP	G	G	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	ERLEC1	NM_001127398	exon10	c.940-1G>C	.	ATATTAGGACAAG	.	133.0	53.0	161.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
AUP1	550	hgsc.bcm.edu	hg19	2	74755400	74755400	+	Missense_Mutation	SNP	C	C	T	rs377142567		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	AUP1	NM_181575	exon6	c.G646A	p.V216I	AAGGGACGAAAAG	.	70.0	39.0	86.0	0.0	.	29	.	.	.	weak	.	.	PASS	Atlas-SNP
POLR1A	25885	hgsc.bcm.edu	hg19	2	86327239	86327239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	POLR1A	NM_015425	exon2	c.C134T	p.P45L	GCCGATGGGTTCC	.	90.0	38.0	138.0	0.0	.	137	.	.	.	none	.	.	PASS	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4824382	4824382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	ITPR1	NM_001168272	exon49	c.C6422T	p.S2141F	CGGCGTCCCCCAG	.	176.0	81.0	209.0	0.0	.	659	.	.	.	none	.	.	PASS	Atlas-SNP
QRICH1	54870	hgsc.bcm.edu	hg19	3	49114436	49114436	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	QRICH1	NM_198880	exon2	c.A15G	p.L5L	GTTCTCTAGGGAA	.	83.0	36.0	93.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRG	5793	hgsc.bcm.edu	hg19	3	62278935	62278935	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	PTPRG	NM_002841	exon30	c.A4291T	p.I1431F	GTTCTTATTGCAG	.	232.0	107.0	259.0	0.0	.	153	.	.	.	none	.	.	PASS	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	hg19	3	62739258	62739258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	CADPS	NM_003716	exon3	c.A746G	p.E249G	GGGTCCTCTTCTC	.	149.0	51.0	149.0	0.0	.	387	.	.	.	none	.	.	PASS	Atlas-SNP
ATP13A4	84239	hgsc.bcm.edu	hg19	3	193175211	193175211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	ATP13A4,NS,adenocarcinoma,0,1	ATP13A4	NM_032279	exon15	c.C1718T	p.P573L	TGTGCCGGCACTC	.	128.0	55.0	150.0	0.0	.	154	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A4	8671	hgsc.bcm.edu	hg19	4	72423545	72423545	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	SLC4A4	NM_001098484	exon22	c.T2880C	p.C960C	GTTGTGTCTGGCC	.	91.0	36.0	109.0	0.0	.	269	.	.	.	none	.	.	PASS	Atlas-SNP
LPCAT1	79888	hgsc.bcm.edu	hg19	5	1501608	1501608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	LPCAT1	NM_024830	exon2	c.G246T	p.K82N	GGGTTCCTTCTCC	.	161.0	76.0	200.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
NR2F1	7025	hgsc.bcm.edu	hg19	5	92923881	92923881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	NR2F1	NM_005654	exon2	c.C722T	p.P241L	TCTTCCCGGATCT	.	113.0	11.0	121.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	hg19	5	140563836	140563836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	PCDHB16,NS,carcinoma,0,1	PCDHB16	NM_020957	exon1	c.G1702A	p.G568S	CAGAACGGCTCCG	.	41.0	2.0	49.0	0.0	.	159	.	.	.	none	.	.	PASS	Atlas-SNP
SH3TC2	79628	hgsc.bcm.edu	hg19	5	148421039	148421039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	SH3TC2	NM_024577	exon6	c.C671T	p.T224I	TGACCTGTCACCA	.	142.0	66.0	176.0	0.0	.	178	.	.	.	none	.	.	PASS	Atlas-SNP
SCAND3	114821	hgsc.bcm.edu	hg19	6	28539881	28539881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	SCAND3	NM_052923	exon4	c.A3785G	p.E1262G	GCAATCTCAGCAA	.	231.0	79.0	308.0	1.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
C6orf222	389384	hgsc.bcm.edu	hg19	6	36298150	36298150	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	C6orf222	NM_001010903	exon2	c.C318T	p.F106F	CACGAAGAAGTTC	.	42.0	16.0	48.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
IBTK	25998	hgsc.bcm.edu	hg19	6	82950058	82950058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	IBTK	NM_015525	exon2	c.A146G	p.D49G	AAAACATCCTTGA	.	105.0	44.0	153.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
SMPDL3A	10924	hgsc.bcm.edu	hg19	6	123124850	123124850	+	Silent	SNP	A	A	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	SMPDL3A	NM_006714	exon5	c.A610C	p.R204R	AACCTTAGGATCA	.	143.0	50.0	174.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152510469	152510469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	SYNE1	NM_182961	exon128	c.C23219T	p.A7740V	ATATAGGCAGAGA	.	88.0	44.0	74.0	0.0	.	3227	.	.	.	none	.	.	PASS	Atlas-SNP
UPP1	7378	hgsc.bcm.edu	hg19	7	48139322	48139322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	UPP1	NM_003364	exon4	c.C100A	p.L34I	GATATTCTCTATC	.	94.0	24.0	59.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
NPTX2	4885	hgsc.bcm.edu	hg19	7	98257796	98257796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	NPTX2	NM_002523	exon5	c.G1151A	p.R384H	TCCTTCGCGCACA	.	242.0	49.0	159.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
TNPO3	23534	hgsc.bcm.edu	hg19	7	128626881	128626881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	TNPO3	NM_012470	exon12	c.G1592T	p.R531L	TGATCTCGGCAGA	.	408.0	95.0	253.0	0.0	.	148	.	.	.	none	.	.	PASS	Atlas-SNP
PRSS55	203074	hgsc.bcm.edu	hg19	8	10396206	10396206	+	Missense_Mutation	SNP	G	G	A	rs200907557	by1000genomes;alternate_allele	TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	PRSS55	NM_198464	exon5	c.G962A	p.G321D	CTATGGGCTCCCC	.	94.0	44.0	145.0	0.0	.	67	.	.	.	alt	G|0.999;C|0.001	.	PASS	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	hg19	8	10468692	10468692	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	RP1L1	NM_178857	exon4	c.A2916G	p.T972T	CTCATATGTCATG	.	86.0	41.0	121.0	0.0	.	453	.	.	.	none	.	.	PASS	Atlas-SNP
DOCK5	80005	hgsc.bcm.edu	hg19	8	25177162	25177162	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	DOCK5	NM_024940	exon15	c.C1512T	p.V504V	CCAAGTCAAGCAG	.	57.0	25.0	63.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
ADAM2	2515	hgsc.bcm.edu	hg19	8	39691500	39691500	+	Missense_Mutation	SNP	T	T	A	rs150036296	alternate_allele	TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	ADAM2	NM_001464	exon3	c.A151T	p.I51F	CTTCAATTACAAT	.	84.0	29.0	52.0	0.0	.	124	.	.	.	alt	T|0.999;G|0.001	.	PASS	Atlas-SNP
SLC20A2	6575	hgsc.bcm.edu	hg19	8	42275393	42275393	+	Silent	SNP	G	G	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	SLC20A2	NM_001257181	exon11	c.C1887A	p.T629T	AGGGACGGTCACG	.	164.0	76.0	180.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	hg19	8	61778469	61778469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	CHD7	NM_017780	exon38	c.G8971A	p.E2991K	GAAATAGAAAACA	.	104.0	43.0	132.0	0.0	.	534	.	.	.	none	.	.	PASS	Atlas-SNP
C8orf37	157657	hgsc.bcm.edu	hg19	8	96259954	96259954	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	C8orf37,colon,carcinoma,0,1	C8orf37	NM_177965	exon6	c.A515T	p.K172M	TTCTTCTTTATCA	.	91.0	47.0	99.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
POP1	10940	hgsc.bcm.edu	hg19	8	99168546	99168546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	POP1	NM_001145860	exon15	c.G2326T	p.G776W	GATGCAGGGTGTC	.	97.0	41.0	128.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
BAI1	575	hgsc.bcm.edu	hg19	8	143558843	143558843	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	BAI1	NM_001702	exon5	c.G1320A	p.Q440Q	CCCCCAGTTTGGG	.	65.0	25.0	80.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
VCP	7415	hgsc.bcm.edu	hg19	9	35066717	35066717	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	VCP	NM_007126	exon4	c.T400A	p.Y134N	TAAGGTATACCTC	.	92.0	37.0	107.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
NPR2	4882	hgsc.bcm.edu	hg19	9	35805967	35805967	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	NPR2	NM_003995	exon14	c.G2188C	p.D730H	GGCCTGGACCTCA	.	75.0	25.0	79.0	0.0	.	162	.	.	.	none	.	.	PASS	Atlas-SNP
PAX5	5079	hgsc.bcm.edu	hg19	9	36966620	36966620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	PAX5	NM_016734	exon6	c.G706A	p.V236M	CCAGCACCTCCAG	.	85.0	40.0	119.0	0.0	.	250	.	.	.	none	.	.	PASS	Atlas-SNP
USP20	10868	hgsc.bcm.edu	hg19	9	132630512	132630512	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	USP20	NM_001008563	exon11	c.G919C	p.A307P	TCGCAGGCCGAGA	.	95.0	37.0	150.0	0.0	.	186	.	.	.	none	.	.	PASS	Atlas-SNP
SEC24C	9632	hgsc.bcm.edu	hg19	10	75526876	75526876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	SEC24C	NM_198597	exon14	c.G1958A	p.G653E	CCCCAGGGAAACT	.	103.0	44.0	123.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
FGFBP3	143282	hgsc.bcm.edu	hg19	10	93667973	93667973	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	FGFBP3	NM_152429	exon2	c.T754G	p.F252V	TGACAAAGAAGTT	.	40.0	16.0	47.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
C11orf40	143501	hgsc.bcm.edu	hg19	11	4599028	4599028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	C11orf40	NM_144663	exon1	c.T23C	p.V8A	CTGGGCACCAGCG	.	40.0	10.0	64.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
PRRG4	79056	hgsc.bcm.edu	hg19	11	32858352	32858352	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	PRRG4	NM_024081	exon3	c.G252A	p.V84V	TTTTGTGGATGAA	.	96.0	35.0	150.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS8	11095	hgsc.bcm.edu	hg19	11	130281414	130281414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	ADAMTS8	NM_007037	exon6	c.C1648T	p.H550Y	CACGGTGTGAAAA	.	98.0	46.0	105.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA2D4	93589	hgsc.bcm.edu	hg19	12	1995492	1995492	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	CACNA2D4	NM_172364	exon8	c.A890C	p.D297A	CTCACGTCCACCA	.	144.0	22.0	163.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
A2M	2	hgsc.bcm.edu	hg19	12	9221412	9221412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	A2M	NM_000014	exon34	c.C4290G	p.F1430L	CGTGAAGAACAAG	.	68.0	25.0	87.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
PRICKLE1	144165	hgsc.bcm.edu	hg19	12	42860028	42860028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	PRICKLE1,rectum,carcinoma,0,1	PRICKLE1	NM_001144882	exon6	c.C743A	p.A248E	TACTCCGCATAGA	.	118.0	5.0	141.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49427988	49427988	+	Silent	SNP	T	T	G	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	MLL2	NM_003482	exon38	c.A10602C	p.V3534V	GCGGTGTACACCA	.	47.0	19.0	50.0	0.0	.	1173	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF25	115557	hgsc.bcm.edu	hg19	12	58009476	58009476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	ARHGEF25	NM_001111270	exon13	c.T1337C	p.V446A	GATATGTATACAA	.	111.0	48.0	141.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
AMDHD1	144193	hgsc.bcm.edu	hg19	12	96354188	96354188	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	AMDHD1	NM_152435	exon5	c.T600C	p.A200A	AACTGCTACTGAA	.	121.0	56.0	144.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
UHRF1BP1L	23074	hgsc.bcm.edu	hg19	12	100452754	100452754	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	UHRF1BP1L	NM_015054	exon14	c.G2301C	p.K767N	CAAGAGCTTCTTC	.	93.0	36.0	133.0	0.0	.	144	.	.	.	none	.	.	PASS	Atlas-SNP
ACACB	32	hgsc.bcm.edu	hg19	12	109687792	109687792	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	ACACB	NM_001093	exon40	c.C5673A	p.Y1891X	AAGATACATGATC	.	40.0	20.0	53.0	0.0	.	330	.	.	.	none	.	.	PASS	Atlas-SNP
HTR2A	3356	hgsc.bcm.edu	hg19	13	47408978	47408978	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	HTR2A	NM_000621	exon4	c.T1410C	p.C470C	TCACACACAGCTC	.	66.0	25.0	68.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
OR4K2	390431	hgsc.bcm.edu	hg19	14	20345243	20345243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	OR4K2	NM_001005501	exon1	c.G817C	p.V273L	CTGTCTGTGTTTT	.	15.0	8.0	12.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
LTB4R2	56413	hgsc.bcm.edu	hg19	14	24780907	24780907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	LTB4R2	NM_019839	exon2	c.G1037A	p.G346E	ACCCGGGGGGTGG	.	44.0	21.0	68.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45654450	45654450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	FANCM	NM_020937	exon18	c.G4546A	p.A1516T	GATGAAGCAGAAC	.	294.0	121.0	350.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP
RDH12	145226	hgsc.bcm.edu	hg19	14	68191956	68191956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	RDH12	NM_152443	exon5	c.G328A	p.E110K	TTTGCTGAGGGCT	.	102.0	39.0	154.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
PCNX	22990	hgsc.bcm.edu	hg19	14	71568714	71568714	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	PCNX	NM_014982	exon31	c.T5597A	p.F1866Y	ATCATTTTACTTC	.	92.0	48.0	77.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
DDX24	57062	hgsc.bcm.edu	hg19	14	94528900	94528900	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	DDX24	NM_020414	exon3	c.T786C	p.N262N	GGCAGCATTCCTC	.	68.0	32.0	77.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
SLC24A5	283652	hgsc.bcm.edu	hg19	15	48429007	48429007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	SLC24A5	NM_205850	exon6	c.G718A	p.E240K	GCTATGGAGAGAA	.	115.0	48.0	197.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF609	23060	hgsc.bcm.edu	hg19	15	64972427	64972427	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	ZNF609	NM_015042	exon6	c.C3813T	p.S1271S	TGGCAGCAAGGTC	.	80.0	38.0	131.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72175994	72175994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	MYO9A	NM_006901	exon28	c.C5339T	p.S1780L	ACCTCTGACTGGG	.	132.0	69.0	166.0	0.0	.	203	.	.	.	none	.	.	PASS	Atlas-SNP
IQGAP1	8826	hgsc.bcm.edu	hg19	15	91017793	91017793	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	IQGAP1	NM_003870	exon23	c.G2652A	p.Q884Q	TTTTCAGGAGGAG	.	109.0	54.0	128.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
ZKSCAN2	342357	hgsc.bcm.edu	hg19	16	25255502	25255502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	ZKSCAN2	NM_001012981	exon6	c.A1585G	p.K529E	ACAATTTGCTCTT	.	96.0	39.0	121.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
XPO6	23214	hgsc.bcm.edu	hg19	16	28164063	28164063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	XPO6	NM_015171	exon8	c.G1141T	p.V381F	GGTGAACACTCAC	.	125.0	56.0	170.0	0.0	.	177	.	.	.	none	.	.	PASS	Atlas-SNP
WDR81	124997	hgsc.bcm.edu	hg19	17	1628392	1628392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	WDR81	NM_001163809	exon1	c.C139T	p.P47S	CTGGCTCCGGCCC	.	63.0	17.0	59.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
CLUH	23277	hgsc.bcm.edu	hg19	17	2598316	2598316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	.	NM_015229	exon16	c.C2570T	p.A857V	AGGTGGGCCACGG	.	103.0	31.0	76.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
NOS2	4843	hgsc.bcm.edu	hg19	17	26096089	26096089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	NOS2,NS,adenocarcinoma,0,1	NOS2	NM_000625	exon17	c.G1948C	p.A650P	GAGAGGCCCCCAG	.	52.0	30.0	51.0	1.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
PEX12	5193	hgsc.bcm.edu	hg19	17	33903054	33903054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	PEX12	NM_000286	exon3	c.T827C	p.L276S	GCAGTCAATGACT	.	238.0	63.0	172.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
MED13	9969	hgsc.bcm.edu	hg19	17	60043908	60043908	+	Silent	SNP	T	T	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	MED13	NM_005121	exon19	c.A4296T	p.A1432A	CCATTCTGCTACC	.	135.0	36.0	135.0	0.0	.	181	.	.	.	none	.	.	PASS	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21523876	21523876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	LAMA3	NM_198129	exon69	c.G9151A	p.D3051N	GGGACAGATGGGA	.	85.0	43.0	108.0	0.0	.	397	.	.	.	none	.	.	PASS	Atlas-SNP
HDHD2	84064	hgsc.bcm.edu	hg19	18	44635149	44635149	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	HDHD2	NM_032124	exon7	c.T684G	p.Y228X	TGCTCGATATTTC	.	86.0	43.0	89.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM147	10430	hgsc.bcm.edu	hg19	19	36037600	36037600	+	Silent	SNP	G	G	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	TMEM147	NM_032635	exon4	c.G234T	p.V78V	GGATGTGGCAGAC	.	80.0	31.0	88.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM147	10430	hgsc.bcm.edu	hg19	19	36037611	36037611	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	TMEM147	NM_032635	exon4	c.T245A	p.I82K	ACCTGATAGGTCT	.	81.0	30.0	82.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM147	10430	hgsc.bcm.edu	hg19	19	36037612	36037612	+	Silent	SNP	A	A	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	TMEM147	NM_032635	exon4	c.A246T	p.I82I	CCTGATAGGTCTA	.	81.0	30.0	84.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
TSKS	60385	hgsc.bcm.edu	hg19	19	50243159	50243159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	TSKS	NM_021733	exon11	c.C1653A	p.H551Q	CTTCAAGTGTAGA	.	56.0	26.0	82.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
SIGLEC11	114132	hgsc.bcm.edu	hg19	19	50461600	50461600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	SIGLEC11	NM_052884	exon8	c.C1591T	p.R531C	TACAGCGGAGCCT	.	118.0	13.0	164.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
PLCB1	23236	hgsc.bcm.edu	hg19	20	8626784	8626784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	PLCB1	NM_015192	exon5	c.A420T	p.Q140H	AACAAACCTGCTG	.	66.0	37.0	86.0	0.0	.	394	.	.	.	none	.	.	PASS	Atlas-SNP
APMAP	57136	hgsc.bcm.edu	hg19	20	24964632	24964632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	APMAP	NM_020531	exon2	c.G119A	p.R40Q	GTCACTCGGAAAA	.	55.0	23.0	87.0	0.0	.	3	.	.	.	none	.	.	PASS	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	hg19	21	19701538	19701538	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	TMPRSS15	NM_002772	exon15	c.T1728C	p.I576I	ATCGTTAATATTT	.	229.0	117.0	312.0	1.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	hg19	21	19701570	19701570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	TMPRSS15	NM_002772	exon15	c.C1696T	p.L566F	AATGAAGTTGTAT	.	226.0	95.0	325.0	1.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
GART	2618	hgsc.bcm.edu	hg19	21	34901233	34901233	+	Missense_Mutation	SNP	T	T	A	rs376223183	alternate_allele	TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	GART	NM_001136005	exon8	c.A734T	p.D245V	AATAGATCATTAG	.	41.0	12.0	62.0	0.0	.	81	.	.	.	alt	.	.	PASS	Atlas-SNP
GART	2618	hgsc.bcm.edu	hg19	21	34901234	34901234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	GART	NM_001136005	exon8	c.G733A	p.D245N	ATAGATCATTAGA	.	41.0	12.0	60.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
COL6A2	1292	hgsc.bcm.edu	hg19	21	47538955	47538955	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	COL6A2	NM_058175	exon14	c.C1191T	p.G397G	TCAAGGCAACAGT	.	273.0	88.0	356.0	1.0	.	351	.	.	.	none	.	.	PASS	Atlas-SNP
DIP2A	23181	hgsc.bcm.edu	hg19	21	47917012	47917012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	DIP2A	NM_206891	exon4	c.C395T	p.T132I	CCTACACCCCTCC	.	109.0	41.0	129.0	0.0	.	332	.	.	.	none	.	.	PASS	Atlas-SNP
PI4KA	5297	hgsc.bcm.edu	hg19	22	21153483	21153483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	PI4KA	NM_058004	exon16	c.G1902T	p.M634I	GGGCTCCATGACC	.	57.0	23.0	69.0	0.0	.	313	.	.	.	none	.	.	PASS	Atlas-SNP
C22orf43	51233	hgsc.bcm.edu	hg19	22	23964292	23964292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	C22orf43	NM_016449	exon4	c.G370T	p.D124Y	CATCATCATCATC	.	56.0	15.0	64.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
DRG1	4733	hgsc.bcm.edu	hg19	22	31816283	31816283	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	DRG1,bladder,carcinoma,-2,1	DRG1	NM_004147	exon5	c.C454T	p.L152L	GATGTCCTGAAAC	.	102.0	53.0	129.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
EFHC2	80258	hgsc.bcm.edu	hg19	X	44008117	44008117	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	EFHC2	NM_025184	exon15	c.T2174A	p.M725K	GATGGCATACCAA	.	157.0	143.0	263.0	1.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
SUV39H1	6839	hgsc.bcm.edu	hg19	X	48558807	48558807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	SUV39H1	NM_003173	exon3	c.A491G	p.N164S	ACATCAATGAGTA	.	81.0	76.0	93.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
LIMCH1	22998	hgsc.bcm.edu	hg19	4	41621302	41621303	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	LIMCH1_ENST00000503057,NS,carcinoma,-1,2	LIMCH1	NM_014988	exon8	c.779_780del	p.260_260del	.	.	112.0	52.0	119.0	0.0	.	233	.	0.464286	0	none	.	.	PASS	Atlas-Indel,Pindel
KRT13	3860	hgsc.bcm.edu	hg19	17	39659323	39659323	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	KRT13	NM_002274	exon4	c.764delT	p.V255fs	.	.	93.0	23.0	77.0	0.0	.	72	.	0.247312	0	none	.	.	PASS	Atlas-Indel,Pindel
CP	1356	hgsc.bcm.edu	hg19	3	148930300	148930300	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	CP	NM_000096	exon2	c.333delC	p.N111fs	.	.	91.0	39.0	104.0	0.0	.	112	.	0.428571	0	none	.	.	PASS	Atlas-Indel,Pindel
TIGD6	81789	hgsc.bcm.edu	hg19	5	149375763	149375765	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	TIGD6	NM_001243253	exon2	c.148_150del	p.50_50del	.	.	95.0	33.0	110.0	0.0	.	29	.	0.347368	0	none	.	.	PASS	Atlas-Indel,Pindel
N4BP2	55728	hgsc.bcm.edu	hg19	4	40122134	40122134	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	N4BP2	NM_018177	exon9	c.2402delC	p.T801fs	.	.	184.0	71.0	229.0	0.0	.	166	.	0.38587	0	none	.	.	PASS	Atlas-Indel,Pindel
KDM5A	5927	hgsc.bcm.edu	hg19	12	427414	427417	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	KDM5A	NM_001042603	exon19	c.2753_2756del	p.918_919del	.	.	85.0	27.0	107.0	0.0	.	307	.	0.317647	0	none	.	.	PASS	Atlas-Indel,Pindel
TBC1D22A	25771	hgsc.bcm.edu	hg19	22	47287237	47287248	+	In_Frame_Del	DEL	GAGCACTATTAC	GAGCACTATTAC	-	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	GAGCACTATTAC	GAGCACTATTAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	TBC1D22A	NM_014346	exon6	c.783_794del	p.261_265del	.	.	176.0	31.0	278.0	0.0	.	54	.	0.176136	0	none	.	.	PASS	Atlas-Indel,Pindel
CCDC149	91050	hgsc.bcm.edu	hg19	4	24878300	24878300	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	CCDC149	NM_173463	exon3	c.84delG	p.K28fs	.	.	55.0	18.0	82.0	0.0	.	41	.	0.327273	0	none	.	.	PASS	Atlas-Indel,Pindel
SNRK	54861	hgsc.bcm.edu	hg19	3	43389082	43389082	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	SNRK	NM_001100594	exon6	c.1330delA	p.R444fs	.	.	83.0	44.0	85.0	0.0	.	118	.	0.53012	0	none	.	.	PASS	Atlas-Indel,Pindel
WFDC6	140870	hgsc.bcm.edu	hg19	20	44163124	44163139	+	Frame_Shift_Del	DEL	ATGGTATAAAGTAAGG	ATGGTATAAAGTAAGG	-	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	ATGGTATAAAGTAAGG	ATGGTATAAAGTAAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	WFDC6	NM_080827	exon3	c.229_244del	p.77_82del	.	.	75.0	27.0	102.0	0.0	.	13	.	0.36	0	none	.	.	PASS	Atlas-Indel,Pindel
C6orf222	389384	hgsc.bcm.edu	hg19	6	36298147	36298148	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	C6orf222,NS,carcinoma,0,1	C6orf222	NM_001010903	exon2	c.321_322insT	p.F107fs	.	.	39.0	15.0	48.0	0.0	.	72	.	0.384615	0	none	.	.	PASS	Atlas-INDEL
POM121L2	94026	hgsc.bcm.edu	hg19	6	27278778	27278779	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	POM121L2	NM_033482	exon1	c.1172_1173del	p.391_391del	.	.	101.0	38.0	121.0	0.0	.	61	.	0.376238	0	none	.	.	PASS	Atlas-Indel,Pindel
LPHN3	23284	hgsc.bcm.edu	hg19	4	62598714	62598715	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-UZ-A9PR-01A-11D-A42J-10	TCGA-UZ-A9PR-10A-01D-A42M-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22f04597-4f4f-47c4-9d69-6b3b3f20701d	f568a26d-8461-430f-82d6-b31750f9addc	.	LPHN3	NM_015236	exon5	c.636_637del	p.212_213del	.	.	98.0	45.0	107.0	0.0	.	800	.	0.459184	0	none	.	.	PASS	Atlas-Indel,Pindel
