Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
KIAA2013	90231	hgsc.bcm.edu	hg19	1	11983151	11983151	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	KIAA2013	NM_138346	exon2	c.C1429T	p.L477L	TGTGCAGCACGTC	.	133.0	48.0	180.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16257405	16257405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	SPEN	NM_015001	exon11	c.C4670T	p.S1557F	TCATTTCTGGTAG	.	152.0	72.0	184.0	0.0	.	374	.	.	.	none	.	.	PASS	Atlas-SNP
PADI1	29943	hgsc.bcm.edu	hg19	1	17555524	17555524	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	PADI1	NM_013358	exon8	c.C907G	p.P303A	CAGCCTCCTGAGG	.	21.0	9.0	25.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
OR10K1	391109	hgsc.bcm.edu	hg19	1	158436100	158436100	+	Missense_Mutation	SNP	T	T	G	rs202043017	by1000genomes;alternate_allele	TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	OR10K1	NM_001004473	exon1	c.T749G	p.V250G	TAACTGTTCACTA	.	60.0	28.0	96.0	0.0	.	80	.	.	.	alt	T|1.000;C|0.000	.	PASS	Atlas-SNP
TEX35	84066	hgsc.bcm.edu	hg19	1	178483864	178483864	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	TEX35	NM_001170722	exon3	c.A144C	p.E48D	ACAAGAAGGGCGG	.	107.0	55.0	135.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186099715	186099715	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	HMCN1	NM_031935	exon85	c.G13116A	p.E4372E	TTGTGAGGTGAAA	.	112.0	53.0	147.0	0.0	.	797	.	.	.	none	.	.	PASS	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	hg19	1	208215625	208215625	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	PLXNA2	NM_025179	exon22	c.C4104G	p.F1368L	GCGGATGAAGGTC	.	66.0	26.0	101.0	0.0	.	178	.	.	.	none	.	.	PASS	Atlas-SNP
FOSL2	2355	hgsc.bcm.edu	hg19	2	28634997	28634997	+	Silent	SNP	G	G	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	FOSL2	NM_005253	exon4	c.G663C	p.V221V	AGTGGTGAAACAG	.	80.0	28.0	87.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32824826	32824826	+	Silent	SNP	G	G	T	rs144649481	byfrequency;alternate_allele	TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	BIRC6_ENST00000421745,colon,carcinoma,0,2	BIRC6	NM_016252	exon70	c.G13851T	p.A4617A	TCCAGCGGACACC	.	68.0	3.0	71.0	0.0	.	838	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
LHCGR	3973	hgsc.bcm.edu	hg19	2	48982764	48982764	+	Missense_Mutation	SNP	A	A	T	rs4539842	bycluster	TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	LHCGR	NM_000233	exon1	c.T47A	p.L16Q	TGCAGCAGCAGCA	.	23.0	5.0	54.0	0.0	.	154	.	.	.	weak	.	.	PASS	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	50850545	50850545	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	NRXN1	NM_001135659	exon7	c.A1140G	p.G380G	CCCTGATCCCAAA	.	67.0	25.0	91.0	0.0	.	1118	.	.	.	none	.	.	PASS	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73676852	73676852	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	ALMS1	NM_015120	exon8	c.C3195G	p.D1065E	ATCAGACAGTCAT	.	150.0	48.0	176.0	0.0	.	384	.	.	.	none	.	.	PASS	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73680924	73680924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	ALMS1	NM_015120	exon8	c.G7267T	p.G2423C	GGAAATGGTTCCT	.	78.0	30.0	136.0	0.0	.	384	.	.	.	none	.	.	PASS	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73680925	73680925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	ALMS1	NM_015120	exon8	c.G7268T	p.G2423V	GAAATGGTTCCTG	.	78.0	30.0	136.0	0.0	.	384	.	.	.	none	.	.	PASS	Atlas-SNP
POLR1A	25885	hgsc.bcm.edu	hg19	2	86302371	86302371	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	POLR1A	NM_015425	exon12	c.A1393C	p.K465Q	TCAGTTTTGTGGC	.	63.0	23.0	74.0	0.0	.	137	.	.	.	none	.	.	PASS	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168106667	168106667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	XIRP2,colon,carcinoma,0,1	XIRP2	NM_152381	exon9	c.A8765G	p.Q2922R	TTACACAGAACAA	.	254.0	110.0	355.0	0.0	.	914	.	.	.	none	.	.	PASS	Atlas-SNP
SLC40A1	30061	hgsc.bcm.edu	hg19	2	190439896	190439896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	SLC40A1	NM_014585	exon3	c.A262G	p.R88G	TAAGTCTAGCATT	.	113.0	41.0	142.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
BMPR2	659	hgsc.bcm.edu	hg19	2	203420241	203420241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	BMPR2	NM_001204	exon12	c.C1853T	p.T618I	ACACCACAGGACT	.	95.0	29.0	93.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	hg19	2	211523412	211523412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	CPS1	NM_001122633	exon32	c.G3774C	p.L1258F	TGTCTTGGTAAGA	.	42.0	10.0	53.0	0.0	.	485	.	.	.	none	.	.	PASS	Atlas-SNP
NYAP2	57624	hgsc.bcm.edu	hg19	2	226491661	226491661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	.	NM_020864	exon5	c.C1647A	p.S549R	CCGAAGCCACAGC	.	221.0	96.0	335.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PID1	55022	hgsc.bcm.edu	hg19	2	229890502	229890502	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	PID1	NM_017933	exon4	c.T593A	p.V198E	CACTCCACGGCGT	.	82.0	30.0	108.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
FAM107A	11170	hgsc.bcm.edu	hg19	3	58555533	58555533	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	FAM107A	NM_001076778	exon2	c.C55G	p.P19A	ATTCTGGCCGGGC	.	42.0	12.0	48.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
MAGEF1	64110	hgsc.bcm.edu	hg19	3	184429221	184429221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	MAGEF1	NM_022149	exon1	c.G389A	p.G130D	TCAAAACCAAAGA	.	80.0	24.0	76.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
SLC2A9	56606	hgsc.bcm.edu	hg19	4	10020642	10020642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	SLC2A9	NM_020041	exon2	c.T206C	p.F69S	TAGAGGAAGGAGG	.	188.0	60.0	266.0	0.0	.	158	.	.	.	none	.	.	PASS	Atlas-SNP
SDAD1	55153	hgsc.bcm.edu	hg19	4	76896925	76896925	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	SDAD1	NM_018115	exon6	c.A550C	p.M184L	CAATCATTACATC	.	93.0	42.0	140.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
IL2	3558	hgsc.bcm.edu	hg19	4	123377451	123377451	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	IL2	NM_000586	exon1	c.A145T	p.N49Y	TTACATTAATTCC	.	99.0	38.0	178.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	hg19	6	33632875	33632875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	ITPR3_ENST00000374316,colon,carcinoma,0,2	ITPR3	NM_002224	exon13	c.G1294A	p.V432M	GCCATCGTGTCAG	.	46.0	34.0	52.0	0.0	.	409	.	.	.	none	.	.	PASS	Atlas-SNP
FOXP4	116113	hgsc.bcm.edu	hg19	6	41555205	41555205	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	FOXP4	NM_001012426	exon7	c.C827G	p.T276S	ACCATACCCTGCC	.	137.0	114.0	171.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82508768	82508768	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	PCLO	NM_014510	exon10	c.A13539C	p.L4513F	AATTCCTAATCCA	.	210.0	51.0	165.0	0.0	.	1506	.	.	.	none	.	.	PASS	Atlas-SNP
AP4M1	9179	hgsc.bcm.edu	hg19	7	99703890	99703890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	AP4M1	NM_004722	exon13	c.T1001C	p.L334P	TGCACCTCCCCCT	.	77.0	4.0	52.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
POT1	25913	hgsc.bcm.edu	hg19	7	124493170	124493170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	POT1_ENST00000357628,NS,NS,0,2	POT1	NM_015450	exon10	c.A725G	p.Y242C	AGGCTATAGATTC	.	131.0	83.0	133.0	0.0	.	186	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRD	5789	hgsc.bcm.edu	hg19	9	8460470	8460470	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	PTPRD	NM_002839	exon33	c.T3816C	p.G1272G	GACAGGACCTACA	.	90.0	28.0	99.0	0.0	.	1348	.	.	.	none	.	.	PASS	Atlas-SNP
BAAT	570	hgsc.bcm.edu	hg19	9	104130573	104130573	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	BAAT	NM_001127610	exon3	c.G498C	p.L166F	ACCAAACAAATCA	.	157.0	64.0	213.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
UVRAG	7405	hgsc.bcm.edu	hg19	11	75826995	75826995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	UVRAG	NM_003369	exon14	c.C1333A	p.P445T	GGGACTCCAGACT	.	69.0	22.0	94.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
CALCOCO1	57658	hgsc.bcm.edu	hg19	12	54115291	54115291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	CALCOCO1	NM_020898	exon6	c.A718G	p.I240V	CACTGATGGTCTG	.	63.0	25.0	79.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
CDK4	1019	hgsc.bcm.edu	hg19	12	58145350	58145350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	CDK4	NM_000075	exon2	c.A151G	p.I51V	TGCTGATGGGAAG	.	96.0	34.0	120.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
FLT1	2321	hgsc.bcm.edu	hg19	13	28880844	28880844	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	FLT1	NM_002019	exon29	c.C3786G	p.D1262E	TTTGCTGTCAGTC	.	59.0	29.0	67.0	0.0	.	393	.	.	.	none	.	.	PASS	Atlas-SNP
SETDB2	83852	hgsc.bcm.edu	hg19	13	50041999	50041999	+	Splice_Site	SNP	G	G	A	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	SETDB2	NM_031915	exon6	c.245-1G>A	.	TGTGTAGATCCTA	.	35.0	17.0	32.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64669618	64669618	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	SYNE2	NM_182914	exon100	c.C18138T	p.S6046S	GCTTTCCAAGCCT	.	65.0	31.0	87.0	0.0	.	577	.	.	.	none	.	.	PASS	Atlas-SNP
SNW1	22938	hgsc.bcm.edu	hg19	14	78203382	78203382	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	SNW1	NM_012245	exon6	c.T570C	p.S190S	AGCTCCAGAGTTG	.	22.0	13.0	24.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
ZWILCH	55055	hgsc.bcm.edu	hg19	15	66838985	66838985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	ZWILCH	NM_017975	exon18	c.A1744G	p.M582V	ACTAACATGGTTA	.	50.0	21.0	76.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
CYP1A2	1544	hgsc.bcm.edu	hg19	15	75042609	75042609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	CYP1A2	NM_000761	exon2	c.A530C	p.Q177P	GGTTGCAGGAGCT	.	58.0	22.0	53.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
IL16	3603	hgsc.bcm.edu	hg19	15	81598444	81598444	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	IL16	NM_001172128	exon17	c.C3616G	p.L1206V	CCCGACCTCAACT	.	32.0	10.0	43.0	0.0	.	254	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP1	22861	hgsc.bcm.edu	hg19	17	5445303	5445303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	NLRP1	NM_033007	exon6	c.C2573A	p.A858D	CCAAAGGCAAGGT	.	51.0	17.0	50.0	0.0	.	358	.	.	.	none	.	.	PASS	Atlas-SNP
SENP3	26168	hgsc.bcm.edu	hg19	17	7474735	7474735	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	SENP3	NM_015670	exon12	c.G1659A	p.Q553Q	CACCCAGCAGGAC	.	52.0	9.0	69.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
MAPT	4137	hgsc.bcm.edu	hg19	17	44073780	44073780	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	MAPT	NM_001123066	exon11	c.C1577A	p.S526X	CAAAATCAGGGGA	.	59.0	32.0	56.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	hg19	17	56405116	56405116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	BZRAP1	NM_024418	exon1	c.A166G	p.R56G	CAGACCTCAGTTC	.	59.0	16.0	50.0	0.0	.	287	.	.	.	none	.	.	PASS	Atlas-SNP
CLUL1	27098	hgsc.bcm.edu	hg19	18	619309	619309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	CLUL1	NM_199167	exon3	c.A203G	p.K68R	AAGAGAAGGAACA	.	146.0	59.0	215.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
CLIP3	25999	hgsc.bcm.edu	hg19	19	36510103	36510103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	CLIP3	NM_001199570	exon7	c.G1024A	p.V342I	ACCGAACGCCCCC	.	26.0	11.0	35.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
PRR12	57479	hgsc.bcm.edu	hg19	19	50105116	50105116	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	PRR12	NM_020719	exon6	c.G4714C	p.G1572R	GGAGAGGGCATCT	.	69.0	27.0	122.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF616	90317	hgsc.bcm.edu	hg19	19	52618903	52618903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	ZNF616	NM_178523	exon4	c.A1514G	p.H505R	CGTGAATGTTGAC	.	55.0	21.0	57.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
NPEPL1	79716	hgsc.bcm.edu	hg19	20	57268881	57268881	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	NPEPL1	NM_024663	exon2	c.C239G	p.P80R	CCCTGCCCTGCAG	.	97.0	25.0	166.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13286	13286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	.	ENST00000361567	exon1	c.T950C	p.I317T	TTACAATCGGCAT	.	11.0	6.0	22.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF256	10172	hgsc.bcm.edu	hg19	19	58452978	58452978	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	ZNF256	NM_005773	exon3	c.1199delT	p.L400fs	.	.	61.0	27.0	66.0	0.0	.	117	.	0.442623	0	none	.	.	PASS	Atlas-Indel,Pindel
OBSCN	84033	hgsc.bcm.edu	hg19	1	228404296	228404297	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	OBSCN	NM_001098623	exon7	c.2270_2271insA	p.S757fs	.	.	127.0	52.0	151.0	0.0	.	2142	.	0.409449	0	none	.	.	PASS	Atlas-Indel,Pindel
ALMS1	7840	hgsc.bcm.edu	hg19	2	73680903	73680911	+	In_Frame_Del	DEL	AGTGATGCC	AGTGATGCC	-	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	AGTGATGCC	AGTGATGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	ALMS1	NM_015120	exon8	c.7245_7253del	p.2415_2418del	.	.	77.0	23.0	122.0	0.0	.	384	.	0.298701	0	none	.	.	PASS	Atlas-Indel,Pindel
SENP3	26168	hgsc.bcm.edu	hg19	17	7474732	7474733	+	In_Frame_Ins	INS	-	-	CAA	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	SENP3	NM_015670	exon12	c.1656_1657insCAA	p.T552delinsTQ	.	.	52.0	18.0	70.0	0.0	.	18	.	0.346154	0	none	.	.	PASS	Atlas-INDEL
NAA50	80218	hgsc.bcm.edu	hg19	3	113441795	113441795	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	NAA50	NM_025146	exon4	c.291delA	p.L97fs	.	.	522.0	145.0	536.0	0.0	.	10	.	0.277778	0	none	.	.	PASS	Atlas-Indel,Pindel
SYNE2	23224	hgsc.bcm.edu	hg19	14	64519388	64519388	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	SYNE2	NM_015180	exon48	c.8756delA	p.N2919fs	.	.	120.0	52.0	146.0	0.0	.	577	.	0.433333	0	none	.	.	PASS	Atlas-Indel,Pindel
NPEPL1	79716	hgsc.bcm.edu	hg19	20	57268883	57268883	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	NPEPL1	NM_024663	exon2	c.240delC	p.P80fs	.	.	96.0	26.0	166.0	0.0	.	36	.	0.270833	0	none	.	.	PASS	Atlas-INDEL
DHX30	22907	hgsc.bcm.edu	hg19	3	47891247	47891253	+	Frame_Shift_Del	DEL	GTGCACA	GTGCACA	-	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	GTGCACA	GTGCACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	DHX30	NM_138615	exon21	c.3318_3324del	p.1106_1108del	.	.	62.0	27.0	80.0	0.0	.	101	.	0.435484	0	none	.	.	PASS	Atlas-Indel,Pindel
NPEPL1	79716	hgsc.bcm.edu	hg19	20	57268875	57268875	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	NPEPL1	NM_024663	exon2	c.232delG	p.A78fs	.	.	107.0	23.0	174.0	0.0	.	36	.	0.214953	0	none	.	.	PASS	Atlas-INDEL
NBEA	26960	hgsc.bcm.edu	hg19	13	35644191	35644191	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	NBEA	NM_015678	exon9	c.1385delC	p.P462fs	.	.	96.0	40.0	133.0	0.0	.	340	.	0.416667	0	none	.	.	PASS	Atlas-Indel,Pindel
POLR3H	171568	hgsc.bcm.edu	hg19	22	41926870	41926871	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	POLR3H	NM_001018050	exon5	c.382_383del	p.128_128del	.	.	69.0	34.0	84.0	0.0	.	30	.	0.492754	0	none	.	.	PASS	Atlas-Indel,Pindel
CACNA1H	8912	hgsc.bcm.edu	hg19	16	1270632	1270632	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	CACNA1H	NM_021098	exon35	c.6699delG	p.E2233fs	.	.	74.0	21.0	52.0	0.0	.	317	.	0.283784	0	none	.	.	PASS	Atlas-Indel,Pindel
LCE4A	199834	hgsc.bcm.edu	hg19	1	152681648	152681648	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	LCE4A	NM_178356	exon1	c.96delA	p.S32fs	.	.	168.0	81.0	250.0	0.0	.	37	.	0.482143	0	none	.	.	PASS	Atlas-Indel,Pindel
SENP3	26168	hgsc.bcm.edu	hg19	17	7474735	7474736	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	SENP3	NM_015670	exon12	c.1659_1660insGA	p.Q553fs	.	.	52.0	18.0	69.0	0.0	.	18	.	0.346154	0	none	.	.	PASS	Atlas-Indel,Pindel
NPEPL1	79716	hgsc.bcm.edu	hg19	20	57268877	57268883	+	Frame_Shift_Del	DEL	CTGCCCT	CTGCCCT	-	novel		TCGA-UZ-A9PU-01A-11D-A42J-10	TCGA-UZ-A9PU-10A-01D-A42M-10	CTGCCCT	CTGCCCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3dc9ae4b-b140-4e01-9339-de952605d9eb	b843c2a5-db31-4152-b8d4-7ad08f849f7e	.	NPEPL1	NM_024663	exon2	c.234_240del	p.78_80del	.	.	106.0	19.0	171.0	0.0	.	36	.	0.179	.	none	.	.	PASS	Pindel
