Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MRPL37	51253	hgsc.bcm.edu	hg19	1	54671037	54671037	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	MRPL37	NM_016491	exon3	c.G600A	p.R200R	GGCCAGGAGGATC	.	82.0	40.0	180.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94522185	94522185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	ABCA4,colon,carcinoma,0,1	ABCA4	NM_000350	exon15	c.G2354A	p.R785H	GTCATGCGGTCCT	.	97.0	55.0	171.0	0.0	.	275	.	.	.	none	.	.	PASS	Atlas-SNP
DPH5	51611	hgsc.bcm.edu	hg19	1	101456156	101456156	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	DPH5	NM_015958	exon8	c.A666G	p.L222L	CCTGGCTAAGCCA	.	86.0	39.0	103.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
ALX3	257	hgsc.bcm.edu	hg19	1	110603552	110603552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	ALX3	NM_006492	exon4	c.G835T	p.G279W	CACTCCCATGGGG	.	146.0	68.0	195.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
RAB7L1	8934	hgsc.bcm.edu	hg19	1	205739969	205739969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	RAB7L1	NM_001135662	exon5	c.C392A	p.P131H	GCCCAAGGGGACA	.	57.0	4.0	77.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
OR2T33	391195	hgsc.bcm.edu	hg19	1	248436732	248436732	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	OR2T33	NM_001004695	exon1	c.C385T	p.R129X	GATATCGGAGTGG	.	472.0	28.0	654.0	0.0	.	133	.	.	.	none	.	.	PASS	Atlas-SNP
SCN9A	6335	hgsc.bcm.edu	hg19	2	167055908	167055908	+	Silent	SNP	G	G	T	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	SCN9A,NS,carcinoma,0,1	SCN9A	NM_002977	exon27	c.C5208A	p.S1736S	CAGGAAGGATATG	.	107.0	48.0	131.0	0.0	.	296	.	.	.	none	.	.	PASS	Atlas-SNP
VILL	50853	hgsc.bcm.edu	hg19	3	38043001	38043001	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	VILL	NM_015873	exon11	c.C1237G	p.Q413E	CATGGACAGCTGT	.	76.0	31.0	65.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
ASTE1	28990	hgsc.bcm.edu	hg19	3	130743519	130743519	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	ASTE1	NM_014065	exon3	c.A632T	p.N211I	GCTTTATTCATAT	.	100.0	44.0	83.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
WWTR1	25937	hgsc.bcm.edu	hg19	3	149243902	149243902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	WWTR1,NS,carcinoma,0,1	WWTR1	NM_001168278	exon7	c.C916T	p.H306Y	TCGAATGATATGG	.	68.0	20.0	88.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
MRFAP1	93621	hgsc.bcm.edu	hg19	4	6642705	6642705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	MRFAP1	NM_001272053	exon2	c.T116C	p.I39T	AGGACATCGCGTC	.	109.0	40.0	144.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A4	8671	hgsc.bcm.edu	hg19	4	72215763	72215763	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	SLC4A4	NM_001098484	exon5	c.A524T	p.E175V	ATCGGGAGGCTTC	.	37.0	21.0	69.0	0.0	.	269	.	.	.	none	.	.	PASS	Atlas-SNP
AGPAT9	84803	hgsc.bcm.edu	hg19	4	84516012	84516012	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	AGPAT9	NM_001256421	exon8	c.T753C	p.H251H	GGTTCATGGCGGC	.	58.0	24.0	80.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
HERC6	55008	hgsc.bcm.edu	hg19	4	89300229	89300229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	HERC6	NM_017912	exon1	c.G156C	p.R52S	CAGCAGGGGTCAG	.	51.0	28.0	69.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
CLCN3	1182	hgsc.bcm.edu	hg19	4	170610219	170610219	+	Silent	SNP	T	T	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	CLCN3	NM_001243372	exon5	c.T444A	p.I148I	AGACATTGCTGCC	.	66.0	33.0	89.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
MED10	84246	hgsc.bcm.edu	hg19	5	6372638	6372638	+	Missense_Mutation	SNP	C	C	A	rs145638352		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	MED10	NM_032286	exon4	c.G386T	p.G129V	TCCTCCCCCCGGA	.	99.0	48.0	115.0	0.0	.	7	.	.	.	weak	C|1.000;A|0.000	0.000	PASS	Atlas-SNP
FAM105A	54491	hgsc.bcm.edu	hg19	5	14608915	14608915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.,1	FAM105A	NM_019018	exon7	c.T686C	p.L229P	ACACCCTTTTTTC	.	59.0	3.0	86.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
AQPEP	0	hgsc.bcm.edu	hg19	5	115351418	115351418	+	Silent	SNP	C	C	G	rs143698388	bycluster;byfrequency;alternate_allele	TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	FLJ90650,colon,carcinoma,0,1	.	NM_173800	exon18	c.C2712G	p.V904V	GTATGTCGCAAAA	.	122.0	67.0	147.0	0.0	.	.	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
MARCH3	115123	hgsc.bcm.edu	hg19	5	126253785	126253785	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	MARCH3	NM_178450	exon2	c.G79C	p.V27L	CCTCCACCGTCTT	.	101.0	42.0	118.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
GRXCR2	643226	hgsc.bcm.edu	hg19	5	145246288	145246288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	GRXCR2	NM_001080516	exon2	c.C340A	p.L114I	TAGGTAGGGGCTA	.	39.0	17.0	74.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
HMGXB3	22993	hgsc.bcm.edu	hg19	5	149386162	149386162	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	HMGXB3	NM_014983	exon3	c.G264A	p.R88R	CGAGAGGAGTTAC	.	60.0	31.0	95.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	hg19	5	176008530	176008530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	CDHR2	NM_017675	exon17	c.G2005A	p.D669N	GTGTCTGACTGCG	.	40.0	20.0	51.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
AGPAT1	10554	hgsc.bcm.edu	hg19	6	32139113	32139113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	AGPAT1	NM_006411	exon2	c.C161A	p.P54H	CACACAGGGATGG	.	93.0	42.0	139.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
OOEP	441161	hgsc.bcm.edu	hg19	6	74078985	74078985	+	Missense_Mutation	SNP	C	C	A	rs199988719	bycluster;alternate_allele	TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	OOEP	NM_001080507	exon2	c.G314T	p.R105L	TTCACCCGATTCT	.	124.0	52.0	178.0	0.0	.	18	.	.	.	alt	.	.	PASS	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	hg19	6	117686779	117686779	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	ROS1	NM_002944	exon19	c.G2938C	p.V980L	AGAAAACTACACC	.	213.0	101.0	275.0	0.0	.	728	.	.	.	none	.	.	PASS	Atlas-SNP
MCM9	254394	hgsc.bcm.edu	hg19	6	119149243	119149243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	MCM9	NM_017696	exon9	c.T1579C	p.Y527H	AGAAATAGGTTTT	.	86.0	4.0	131.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
TXLNB	167838	hgsc.bcm.edu	hg19	6	139563669	139563669	+	Silent	SNP	G	G	T	rs202149819	bycluster;by1000genomes;alternate_allele	TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	TXLNB	NM_153235	exon10	c.C2049A	p.V683V	TTAGTCGACGCCT	.	83.0	32.0	126.0	0.0	.	96	.	.	.	alt	G|0.999;A|0.001	.	PASS	Atlas-SNP
HECW1	23072	hgsc.bcm.edu	hg19	7	43485157	43485157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	HECW1	NM_015052	exon11	c.A2386G	p.N796D	CCAAGCAATCGGA	.	232.0	133.0	233.0	0.0	.	540	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC17	10234	hgsc.bcm.edu	hg19	7	102584947	102584947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	LRRC17	NM_001031692	exon4	c.G1219A	p.A407T	TTACCAGCATATC	.	118.0	5.0	141.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
WASL	8976	hgsc.bcm.edu	hg19	7	123329152	123329152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	WASL	NM_003941	exon10	c.T1400C	p.I467T	CCCACAATTCCTG	.	68.0	26.0	81.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
SLC13A4	26266	hgsc.bcm.edu	hg19	7	135412241	135412241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	SLC13A4	NM_012450	exon1	c.G4T	p.G2C	GCAGGCCCATCGC	.	152.0	54.0	139.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
KCNU1	157855	hgsc.bcm.edu	hg19	8	36788664	36788664	+	Splice_Site	SNP	G	G	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	KCNU1	NM_001031836	exon25	c.2931+1G>A	.	GTTAATGTGAGTC	.	60.0	25.0	100.0	0.0	.	359	.	.	.	none	.	.	PASS	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	125061887	125061887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	FER1L6	NM_001039112	exon22	c.G2764A	p.V922I	GCTCCTGTTGTGA	.	64.0	32.0	103.0	0.0	.	268	.	.	.	none	.	.	PASS	Atlas-SNP
RASEF	158158	hgsc.bcm.edu	hg19	9	85630731	85630731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	RASEF	NM_152573	exon4	c.A754G	p.K252E	TTAGCTTTTTAAT	.	45.0	22.0	56.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJC24	120526	hgsc.bcm.edu	hg19	11	31451825	31451825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	DNAJC24	NM_181706	exon5	c.C327A	p.H109Q	TGATCACTCTTTT	.	48.0	24.0	50.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
CEP57	9702	hgsc.bcm.edu	hg19	11	95564230	95564230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	CEP57	NM_014679	exon11	c.A1313G	p.K438R	AATTAAAAGCTAC	.	212.0	104.0	279.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103126956	103126956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	DYNC2H1	NM_001080463	exon69	c.T10469A	p.I3490N	TCCAAATTTCCCT	.	97.0	50.0	128.0	0.0	.	246	.	.	.	none	.	.	PASS	Atlas-SNP
EXPH5	23086	hgsc.bcm.edu	hg19	11	108384989	108384989	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	EXPH5	NM_015065	exon6	c.T1245A	p.Y415X	CGATTCATATCTC	.	78.0	40.0	126.0	0.0	.	193	.	.	.	none	.	.	PASS	Atlas-SNP
TULP3	7289	hgsc.bcm.edu	hg19	12	3000145	3000145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	TULP3	NM_003324	exon1	c.G32A	p.S11N	GTCCCAGCGGCGA	.	79.0	43.0	85.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
DENND5B	160518	hgsc.bcm.edu	hg19	12	31632918	31632918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	DENND5B	NM_144973	exon3	c.T509C	p.L170P	TTCAAAAGGGAAG	.	100.0	4.0	104.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	71016227	71016227	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	PTPRB	NM_001109754	exon3	c.T651C	p.I217I	GTCTGTAATTCCA	.	60.0	27.0	74.0	0.0	.	676	.	.	.	none	.	.	PASS	Atlas-SNP
LHX5	64211	hgsc.bcm.edu	hg19	12	113909298	113909298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	LHX5	NM_022363	exon1	c.G6A	p.M2I	GTGCACCATCATA	.	79.0	41.0	76.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
WDR25	79446	hgsc.bcm.edu	hg19	14	100847806	100847806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	WDR25	NM_001161476	exon2	c.G545T	p.R182I	GACTAAGACAGCG	.	33.0	20.0	63.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102452422	102452422	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	DYNC1H1	NM_001376	exon8	c.C1860G	p.H620Q	TCTTCACGACAAG	.	80.0	34.0	78.0	0.0	.	395	.	.	.	none	.	.	PASS	Atlas-SNP
LOXL1	4016	hgsc.bcm.edu	hg19	15	74241804	74241804	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	LOXL1	NM_005576	exon6	c.A1607C	p.H536P	AGGTGCACGTGAA	.	70.0	34.0	94.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
NUDT21	11051	hgsc.bcm.edu	hg19	16	56473585	56473585	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	NUDT21	NM_007006	exon4	c.A455T	p.N152I	TCAAAATTTGGTC	.	163.0	85.0	119.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
FOXL1	2300	hgsc.bcm.edu	hg19	16	86612503	86612503	+	Silent	SNP	C	C	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	FOXL1	NM_005250	exon1	c.C174A	p.I58I	GCTCATCGCCATG	.	189.0	80.0	150.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
SMG6	23293	hgsc.bcm.edu	hg19	17	2185973	2185973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	SMG6	NM_017575	exon8	c.G2629A	p.E877K	CATTCTCTTGCTC	.	99.0	27.0	84.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
OR1A1	8383	hgsc.bcm.edu	hg19	17	3119607	3119607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	OR1A1	NM_014565	exon1	c.G693T	p.K231N	CACCAAGGGCGTG	.	94.0	68.0	91.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
ACACA	31	hgsc.bcm.edu	hg19	17	35549238	35549238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	ACACA	NM_198834	exon37	c.G4209T	p.E1403D	ACGATCCTCCTCA	.	72.0	25.0	56.0	0.0	.	395	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	hg19	19	13409851	13409851	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	CACNA1A	NM_001127221	exon19	c.G2599C	p.D867H	CCCGATCGTGGTA	.	297.0	139.0	518.0	0.0	.	715	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22941279	22941279	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	ZNF99,NS,carcinoma,0,1	ZNF99	NM_001080409	exon4	c.G1432C	p.E478Q	GTTTCTCTCCAGT	.	29.0	3.0	57.0	0.0	.	273	.	.	.	none	.	.	PASS	Atlas-SNP
FBL	2091	hgsc.bcm.edu	hg19	19	40328472	40328472	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	FBL	NM_001436	exon6	c.C561T	p.V187V	TGCATAGACTAGA	.	90.0	41.0	114.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
CNOT3	4849	hgsc.bcm.edu	hg19	19	54647753	54647753	+	Silent	SNP	G	G	C	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	CNOT3	NM_014516	exon6	c.G270C	p.R90R	GGAACGGTTCAAA	.	125.0	56.0	169.0	0.0	.	133	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF335	63925	hgsc.bcm.edu	hg19	20	44581108	44581108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	ZNF335	NM_022095	exon20	c.G2867T	p.G956V	TTGGCACCAGAGG	.	84.0	57.0	86.0	0.0	.	115	.	.	.	none	.	.	PASS	Atlas-SNP
ITSN1	6453	hgsc.bcm.edu	hg19	21	35208937	35208937	+	Splice_Site	SNP	G	G	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	ITSN1	NM_003024	exon29	c.3661+1G>A	.	AGCAATGTAAGTG	.	144.0	55.0	201.0	0.0	.	166	.	.	.	none	.	.	PASS	Atlas-SNP
CCT8L2	150160	hgsc.bcm.edu	hg19	22	17073027	17073027	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	CCT8L2,NS,adenocarcinoma,0,2	CCT8L2	NM_014406	exon1	c.G414A	p.T138T	AGTGGCCGTGGCG	.	58.0	5.0	86.0	1.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
FOXO4	4303	hgsc.bcm.edu	hg19	X	70316598	70316598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	FOXO4	NM_005938	exon1	c.C220A	p.P74T	CGGCTCCCAGAGC	.	117.0	114.0	183.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	6982	6982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	.	ENST00000361624	exon1	c.A1079G	p.N360S	TAGCAAACTCATC	.	6.0	6.0	21.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	11109	11109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	.	ENST00000361381	exon1	c.T350C	p.M117T	TAATCATATTTTA	.	7.0	5.0	26.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
VWF	7450	hgsc.bcm.edu	hg19	12	6061618	6061618	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	VWF	NM_000552	exon49	c.8055delC	p.F2685fs	.	.	77.0	32.0	115.0	0.0	.	338	.	0.415584	0	none	.	.	PASS	Atlas-Indel,Pindel
C11orf24	53838	hgsc.bcm.edu	hg19	11	68031211	68031211	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	C11orf24,NS,carcinoma,0,1	C11orf24	NM_022338	exon3	c.26delG	p.W9X	.	.	46.0	21.0	55.0	0.0	.	35	.	0.456522	0	none	.	.	PASS	Atlas-Indel,Pindel
LGR4	55366	hgsc.bcm.edu	hg19	11	27413998	27413999	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	LGR4	NM_018490	exon3	c.325_326insA	p.V109fs	.	.	188.0	91.0	255.0	0.0	.	87	.	0.484043	0	none	.	.	PASS	Atlas-Indel,Pindel
KCNN1	3780	hgsc.bcm.edu	hg19	19	18096236	18096240	+	Frame_Shift_Del	DEL	GGTGT	GGTGT	-	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	GGTGT	GGTGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	KCNN1	NM_002248	exon6	c.1032_1036del	p.344_346del	.	.	34.0	15.0	67.0	0.0	.	74	.	0.441176	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF792	126375	hgsc.bcm.edu	hg19	19	35450319	35450319	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	ZNF792	NM_175872	exon4	c.441delG	p.L147fs	.	.	88.0	45.0	138.0	0.0	.	46	.	0.511364	0	none	.	.	PASS	Atlas-Indel,Pindel
PARG	8505	hgsc.bcm.edu	hg19	10	51363332	51363333	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	PARG	NM_003631	exon3	c.740_741insT	p.C247fs	.	.	189.0	29.0	328.0	0.0	.	46	.	0.153439	0	none	.	.	PASS	Atlas-INDEL
BPTF	2186	hgsc.bcm.edu	hg19	17	65919081	65919082	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	BPTF	NM_004459	exon16	c.6061_6062insG	p.W2021fs	.	.	114.0	72.0	130.0	0.0	.	415	.	0.631579	0	none	.	.	PASS	Atlas-Indel,Pindel
ZPLD1	131368	hgsc.bcm.edu	hg19	3	102187928	102187929	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	ZPLD1	NM_175056	exon8	c.929_930del	p.310_310del	.	.	71.0	44.0	74.0	0.0	.	82	.	0.619718	0	none	.	.	PASS	Atlas-Indel,Pindel
CAMKK1	84254	hgsc.bcm.edu	hg19	17	3786457	3786457	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	CAMKK1	NM_172207	exon6	c.528delG	p.P176fs	.	.	29.0	21.0	30.0	0.0	.	70	.	0.724138	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF639	51193	hgsc.bcm.edu	hg19	3	179051889	179051926	+	Frame_Shift_Del	DEL	TGGTTTTCGGAGTAGACTTCACACAAATGTTAACAGGC	TGGTTTTCGGAGTAGACTTCACACAAATGTTAACAGGC	-	novel		TCGA-UZ-A9PV-01A-11D-A42J-10	TCGA-UZ-A9PV-10A-01D-A42M-10	TGGTTTTCGGAGTAGACTTCACACAAATGTTAACAGGC	TGGTTTTCGGAGTAGACTTCACACAAATGTTAACAGGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b0d2ed48-20a7-461b-a05b-356f5c192282	4c8c47c9-9ba8-4f00-a029-5d6e48a25489	.	ZNF639	NM_016331	exon7	c.1136_1173del	p.379_391del	.	.	160.0	18.0	170.0	0.0	.	45	.	0.112	.	none	.	.	PASS	Pindel
